Wall clock time and date at job start Sat Apr 11 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00277 * 2 1 4 4 H 1.48502 * 109.47305 * 240.00394 * 3 2 1 5 5 H 1.48509 * 109.47249 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47411 * 120.00368 * 3 2 1 7 7 C 1.38810 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00377 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99972 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64616 * 14.74121 * 9 7 2 11 11 C 1.54906 * 104.83118 * 155.89012 * 10 9 7 12 12 C 1.55154 * 101.58023 * 37.00956 * 11 10 9 13 13 C 1.47017 * 125.65015 * 194.75999 * 9 7 2 14 14 H 1.08997 * 110.01298 * 300.53454 * 13 9 7 15 15 C 1.53001 * 109.87946 * 61.62832 * 13 9 7 16 16 N 1.46510 * 109.47079 * 182.39905 * 15 13 9 17 17 C 1.34775 * 120.00096 * 185.13324 * 16 15 13 18 18 O 1.21607 * 119.99628 * 359.97438 * 17 16 15 19 19 C 1.47401 * 120.00028 * 179.97438 * 17 16 15 20 20 C 1.41334 * 126.41036 * 359.97142 * 19 17 16 21 21 N 1.30472 * 108.06715 * 180.02562 * 20 19 17 22 22 N 1.39933 * 108.91840 * 0.02562 * 21 20 19 23 23 C 1.40173 * 125.77250 * 179.97438 * 22 21 20 24 24 C 1.39254 * 120.48890 * 0.02562 * 23 22 21 25 25 C 1.38513 * 118.36877 * 179.72570 * 24 23 22 26 26 C 1.38272 * 119.22505 * 0.02562 * 25 24 23 27 27 N 1.31860 * 120.91513 * 0.02562 * 26 25 24 28 28 C 1.31817 * 121.79177 * 359.95302 * 27 26 25 29 29 C 1.34532 * 108.45574 * 0.22647 * 22 21 20 30 30 H 0.97003 * 119.99943 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36860 * 37.05211 * 10 9 7 32 32 H 1.09001 * 110.46048 * 274.77939 * 10 9 7 33 33 H 1.09001 * 111.00304 * 278.93298 * 11 10 9 34 34 H 1.09008 * 111.00392 * 155.08450 * 11 10 9 35 35 H 1.09007 * 110.71795 * 206.13044 * 12 11 10 36 36 H 1.09000 * 110.71868 * 82.86774 * 12 11 10 37 37 H 1.08998 * 109.47716 * 62.39622 * 15 13 9 38 38 H 1.09002 * 109.47018 * 302.39136 * 15 13 9 39 39 H 0.96993 * 119.99450 * 5.12796 * 16 15 13 40 40 H 1.08000 * 125.96724 * 0.05814 * 20 19 17 41 41 H 1.08000 * 120.81810 * 359.75091 * 24 23 22 42 42 H 1.07996 * 120.38547 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.53828 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.65926 * 180.02562 * 28 27 26 45 45 H 1.08003 * 126.31293 * 179.77628 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1075 -2.5528 -0.3049 11 6 -0.2465 -4.0219 -0.7760 12 6 0.7640 -4.7441 0.1538 13 6 1.8977 -3.7078 0.3033 14 1 2.7026 -3.9353 -0.3956 15 6 2.4328 -3.7254 1.7366 16 7 3.0518 -5.0247 2.0108 17 6 3.5024 -5.3086 3.2489 18 8 3.3956 -4.4861 4.1382 19 6 4.1246 -6.6160 3.5250 20 6 4.3163 -7.6662 2.5987 21 7 4.8972 -8.6543 3.2219 22 7 5.1020 -8.2907 4.5575 23 6 5.6997 -9.0898 5.5419 24 6 6.1536 -10.3696 5.2334 25 6 6.7425 -11.1191 6.2385 26 6 6.8591 -10.5767 7.5050 27 7 6.4180 -9.3616 7.7649 28 6 5.8520 -8.6152 6.8375 29 6 4.6233 -7.0465 4.7384 30 1 -0.4850 0.8401 0.0004 31 1 -0.4076 -1.8696 -1.0994 32 1 -0.7088 -2.3822 0.5882 33 1 0.0418 -4.1257 -1.8220 34 1 -1.2595 -4.3903 -0.6132 35 1 1.1346 -5.6563 -0.3140 36 1 0.3106 -4.9622 1.1207 37 1 1.6112 -3.5601 2.4334 38 1 3.1755 -2.9366 1.8568 39 1 3.1372 -5.6806 1.3014 40 1 4.0322 -7.6528 1.5568 41 1 6.0494 -10.7680 4.2350 42 1 7.1064 -12.1154 6.0352 43 1 7.3171 -11.1568 8.2926 44 1 5.5033 -7.6242 7.0882 45 1 4.6303 -6.4865 5.6618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027927670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:13 Heat of formation + Delta-G solvation = 110.801689 kcal Electronic energy + Delta-G solvation = -28050.339903 eV Core-core repulsion = 24070.525031 eV Total energy + Delta-G solvation = -3979.814872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13818 -40.45371 -39.07566 -37.54304 -34.63937 -34.17533 -32.86789 -32.47144 -30.82323 -30.19163 -29.51351 -28.50693 -25.35744 -24.60568 -24.48122 -23.71745 -22.22845 -21.41087 -20.35542 -19.98262 -19.54294 -18.80938 -17.54052 -16.98439 -16.63311 -16.21509 -16.01252 -15.75496 -15.34165 -14.86841 -14.72952 -14.53801 -14.30310 -14.12855 -13.83946 -13.73998 -13.30689 -13.19936 -12.96768 -12.69445 -12.08830 -11.88233 -11.75075 -11.55219 -11.31887 -11.21456 -10.94092 -10.76923 -10.31913 -10.24349 -10.20581 -10.12463 -9.96216 -9.84368 -9.74537 -9.63961 -9.59418 -8.80887 -8.60583 -8.51545 -6.83789 -5.76466 -3.13184 0.06847 0.57208 1.50259 1.71403 1.89274 3.20035 3.39337 3.44203 3.46160 3.47728 3.52262 3.80315 3.91908 4.06621 4.32662 4.36365 4.48458 4.50035 4.78274 4.82226 4.94527 5.04493 5.32818 5.36623 5.41770 5.43493 5.47449 5.54539 5.62890 5.81260 5.82043 5.99656 6.07228 6.15316 6.24916 6.46198 6.47638 6.55615 6.62735 6.71173 6.82614 7.03973 7.07112 7.28817 7.51506 7.61341 7.79252 7.81064 8.25870 8.49799 9.17658 9.78300 10.45549 11.35477 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.001998 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.225247 B =14010.713845 C =14857.572372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.111 3.889 16 N -0.716 5.716 17 C 0.586 3.414 18 O -0.546 6.546 19 C -0.267 4.267 20 C 0.095 3.905 21 N -0.293 5.293 22 N -0.314 5.314 23 C 0.108 3.892 24 C -0.073 4.073 25 C -0.147 4.147 26 C 0.088 3.912 27 N -0.456 5.456 28 C 0.089 3.911 29 C 0.122 3.878 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.394 0.606 40 H 0.199 0.801 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.545 -24.037 8.568 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.188 4.188 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.014 4.014 16 N -0.366 5.366 17 C 0.371 3.629 18 O -0.425 6.425 19 C -0.281 4.281 20 C -0.093 4.093 21 N -0.110 5.110 22 N -0.088 5.088 23 C 0.013 3.987 24 C -0.100 4.100 25 C -0.167 4.167 26 C -0.070 4.070 27 N -0.164 5.164 28 C -0.072 4.072 29 C -0.024 4.024 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.227 0.773 40 H 0.216 0.784 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.182 0.818 44 H 0.182 0.818 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.958 -24.030 9.953 28.223 hybrid contribution 0.060 1.062 -1.099 1.529 sum 11.018 -22.968 8.854 26.969 Atomic orbital electron populations 1.69926 1.05017 1.25438 1.55741 1.24920 0.95685 0.97885 1.01363 0.86227 0.78596 0.83078 0.78030 1.21087 1.21586 1.20926 1.18935 0.90365 0.82174 1.44813 0.90680 1.44469 1.06401 1.01003 1.79364 1.21449 0.84803 0.90146 0.98848 1.23008 0.97571 0.99642 0.98543 1.22610 0.97132 0.96950 0.99738 1.21132 0.94523 0.88113 0.91915 0.94476 1.22266 0.97549 0.82388 0.99224 1.45903 1.61087 1.19206 1.10419 1.17141 0.77918 0.84821 0.82986 1.90803 1.57611 1.49010 1.45073 1.20529 1.15156 0.98543 0.93873 1.24306 0.94926 0.89765 1.00352 1.77223 1.22733 1.23705 0.87351 1.45500 1.44358 1.11252 1.07667 1.18708 0.99359 0.92433 0.88188 1.21422 0.95599 0.91581 1.01431 1.22158 0.99563 1.01557 0.93459 1.22933 0.96262 0.91604 0.96176 1.67798 1.08591 1.06217 1.33779 1.22671 0.97334 1.00584 0.86583 1.23064 0.93702 0.85148 1.00449 0.93546 0.91018 0.95582 0.92312 0.92367 0.92398 0.91773 0.91447 0.91417 0.77270 0.78406 0.83094 0.83554 0.81811 0.81798 0.78904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.58 55.49 0.59 -25.90 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.35 9.76 -15.06 -0.15 -6.50 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.34 3.13 -162.58 -0.51 -14.85 16 10 C 0.17 4.05 5.41 -2.53 -0.01 4.03 16 11 C -0.15 -2.67 7.08 -24.59 -0.17 -2.84 16 12 C -0.13 -2.03 6.10 -24.90 -0.15 -2.18 16 13 C 0.15 2.90 3.22 -66.96 -0.22 2.68 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 2.08 5.07 -4.04 -0.02 2.06 16 16 N -0.72 -10.34 5.32 -61.38 -0.33 -10.66 16 17 C 0.59 9.03 7.81 -12.53 -0.10 8.93 16 18 O -0.55 -10.70 16.89 5.27 0.09 -10.61 16 19 C -0.27 -3.22 6.13 -105.05 -0.64 -3.86 16 20 C 0.10 0.94 11.50 -16.95 -0.20 0.75 16 21 N -0.29 -3.16 11.85 30.87 0.37 -2.79 16 22 N -0.31 -3.25 3.77 -10.11 -0.04 -3.29 16 23 C 0.11 0.96 6.70 -83.45 -0.56 0.40 16 24 C -0.07 -0.53 9.77 -39.10 -0.38 -0.92 16 25 C -0.15 -0.77 10.11 -39.47 -0.40 -1.17 16 26 C 0.09 0.53 11.18 -17.53 -0.20 0.33 16 27 N -0.46 -3.89 10.35 -13.10 -0.14 -4.02 16 28 C 0.09 0.74 10.62 -17.34 -0.18 0.55 16 29 C 0.12 1.32 10.62 -16.43 -0.17 1.14 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 32 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.03 7.81 -51.93 -0.41 0.62 16 37 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 38 H 0.07 1.45 7.92 -51.93 -0.41 1.04 16 39 H 0.39 4.33 7.29 -40.82 -0.30 4.03 16 40 H 0.20 1.26 7.50 -52.49 -0.39 0.87 16 41 H 0.15 1.04 7.77 -52.49 -0.41 0.63 16 42 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 43 H 0.16 0.50 8.06 -52.48 -0.42 0.08 16 44 H 0.16 1.08 6.74 -52.49 -0.35 0.73 16 45 H 0.19 1.67 7.04 -52.48 -0.37 1.30 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -34.63 379.28 -8.84 -43.47 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.92 Total: 2.66 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -3.65 Total: 3.30 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.06 Total: -61.52 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.63 -8.84 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027927670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.271 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds