Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00277 * 2 1 4 4 H 1.48502 * 109.47305 * 240.00394 * 3 2 1 5 5 H 1.48509 * 109.47249 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47411 * 120.00368 * 3 2 1 7 7 C 1.38810 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00377 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99972 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64616 * 14.74121 * 9 7 2 11 11 C 1.54906 * 104.83118 * 155.89012 * 10 9 7 12 12 C 1.55154 * 101.58023 * 37.00956 * 11 10 9 13 13 C 1.47017 * 125.65015 * 194.75999 * 9 7 2 14 14 H 1.08997 * 110.01298 * 300.53454 * 13 9 7 15 15 C 1.53001 * 109.87946 * 61.62832 * 13 9 7 16 16 N 1.46510 * 109.47079 * 182.39905 * 15 13 9 17 17 C 1.34775 * 120.00096 * 185.13324 * 16 15 13 18 18 O 1.21607 * 119.99628 * 359.97438 * 17 16 15 19 19 C 1.47401 * 120.00028 * 179.97438 * 17 16 15 20 20 C 1.41334 * 126.41036 * 359.97142 * 19 17 16 21 21 N 1.30472 * 108.06715 * 180.02562 * 20 19 17 22 22 N 1.39933 * 108.91840 * 0.02562 * 21 20 19 23 23 C 1.40173 * 125.77250 * 179.97438 * 22 21 20 24 24 C 1.39254 * 120.48890 * 0.02562 * 23 22 21 25 25 C 1.38513 * 118.36877 * 179.72570 * 24 23 22 26 26 C 1.38272 * 119.22505 * 0.02562 * 25 24 23 27 27 N 1.31860 * 120.91513 * 0.02562 * 26 25 24 28 28 C 1.31817 * 121.79177 * 359.95302 * 27 26 25 29 29 C 1.34532 * 108.45574 * 0.22647 * 22 21 20 30 30 H 0.97003 * 119.99943 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36860 * 37.05211 * 10 9 7 32 32 H 1.09001 * 110.46048 * 274.77939 * 10 9 7 33 33 H 1.09001 * 111.00304 * 278.93298 * 11 10 9 34 34 H 1.09008 * 111.00392 * 155.08450 * 11 10 9 35 35 H 1.09007 * 110.71795 * 206.13044 * 12 11 10 36 36 H 1.09000 * 110.71868 * 82.86774 * 12 11 10 37 37 H 1.08998 * 109.47716 * 62.39622 * 15 13 9 38 38 H 1.09002 * 109.47018 * 302.39136 * 15 13 9 39 39 H 0.96993 * 119.99450 * 5.12796 * 16 15 13 40 40 H 1.08000 * 125.96724 * 0.05814 * 20 19 17 41 41 H 1.08000 * 120.81810 * 359.75091 * 24 23 22 42 42 H 1.07996 * 120.38547 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.53828 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.65926 * 180.02562 * 28 27 26 45 45 H 1.08003 * 126.31293 * 179.77628 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1075 -2.5528 -0.3049 11 6 -0.2465 -4.0219 -0.7760 12 6 0.7640 -4.7441 0.1538 13 6 1.8977 -3.7078 0.3033 14 1 2.7026 -3.9353 -0.3956 15 6 2.4328 -3.7254 1.7366 16 7 3.0518 -5.0247 2.0108 17 6 3.5024 -5.3086 3.2489 18 8 3.3956 -4.4861 4.1382 19 6 4.1246 -6.6160 3.5250 20 6 4.3163 -7.6662 2.5987 21 7 4.8972 -8.6543 3.2219 22 7 5.1020 -8.2907 4.5575 23 6 5.6997 -9.0898 5.5419 24 6 6.1536 -10.3696 5.2334 25 6 6.7425 -11.1191 6.2385 26 6 6.8591 -10.5767 7.5050 27 7 6.4180 -9.3616 7.7649 28 6 5.8520 -8.6152 6.8375 29 6 4.6233 -7.0465 4.7384 30 1 -0.4850 0.8401 0.0004 31 1 -0.4076 -1.8696 -1.0994 32 1 -0.7088 -2.3822 0.5882 33 1 0.0418 -4.1257 -1.8220 34 1 -1.2595 -4.3903 -0.6132 35 1 1.1346 -5.6563 -0.3140 36 1 0.3106 -4.9622 1.1207 37 1 1.6112 -3.5601 2.4334 38 1 3.1755 -2.9366 1.8568 39 1 3.1372 -5.6806 1.3014 40 1 4.0322 -7.6528 1.5568 41 1 6.0494 -10.7680 4.2350 42 1 7.1064 -12.1154 6.0352 43 1 7.3171 -11.1568 8.2926 44 1 5.5033 -7.6242 7.0882 45 1 4.6303 -6.4865 5.6618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027927670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = 87.183985 kcal Electronic energy + Delta-G solvation = -28051.364044 eV Core-core repulsion = 24070.525031 eV Total energy + Delta-G solvation = -3980.839012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.90582 -41.08886 -40.35025 -39.13157 -35.76485 -35.22250 -34.36135 -33.39777 -31.80669 -31.34831 -30.86346 -29.90348 -26.80324 -26.11080 -25.07360 -24.86350 -23.23861 -22.12162 -21.97514 -21.25024 -20.92292 -19.75871 -18.70876 -18.07444 -17.58227 -17.28218 -16.96739 -16.83155 -16.59411 -16.17949 -16.00011 -15.73724 -15.61009 -15.05426 -14.86471 -14.61778 -14.47791 -14.27842 -13.97925 -13.88194 -13.61916 -13.36210 -13.20185 -12.94217 -12.84738 -12.62892 -12.42124 -12.04621 -11.94323 -11.83018 -11.68236 -11.45350 -11.35561 -11.04566 -10.84336 -10.70688 -10.65352 -10.41139 -10.02916 -9.40447 -8.83226 -7.86597 -5.23799 -0.55683 0.05965 0.68129 0.98737 1.10026 1.45288 1.48675 1.54067 2.22703 2.38627 2.52007 2.67922 3.17538 3.30352 3.33300 3.53263 3.66512 3.75774 3.83863 3.92488 3.95046 4.02565 4.04220 4.21844 4.29266 4.31319 4.50375 4.54671 4.56535 4.62987 4.78310 4.87837 4.99895 5.01846 5.04944 5.19358 5.24517 5.25569 5.37452 5.41759 5.50094 5.62062 5.69469 5.77980 5.81110 6.25311 6.27281 6.65820 6.77010 7.11185 7.31292 7.78898 8.44635 9.24185 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.001998 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.225247 B =14010.713845 C =14857.572372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.056 0.944 15 C 0.131 3.869 16 N -0.699 5.699 17 C 0.588 3.412 18 O -0.597 6.597 19 C -0.288 4.288 20 C 0.107 3.893 21 N -0.306 5.306 22 N -0.311 5.311 23 C 0.082 3.918 24 C -0.078 4.078 25 C -0.135 4.135 26 C 0.088 3.912 27 N -0.482 5.482 28 C 0.080 3.920 29 C 0.126 3.874 30 H 0.247 0.753 31 H 0.035 0.965 32 H -0.010 1.010 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.415 0.585 40 H 0.234 0.766 41 H 0.155 0.845 42 H 0.182 0.818 43 H 0.195 0.805 44 H 0.170 0.830 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.252 -27.753 8.155 31.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.150 4.150 13 C 0.041 3.959 14 H 0.073 0.927 15 C 0.005 3.995 16 N -0.351 5.351 17 C 0.377 3.623 18 O -0.479 6.479 19 C -0.302 4.302 20 C -0.082 4.082 21 N -0.123 5.123 22 N -0.083 5.083 23 C -0.012 4.012 24 C -0.105 4.105 25 C -0.155 4.155 26 C -0.069 4.069 27 N -0.191 5.191 28 C -0.079 4.079 29 C -0.022 4.022 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.008 0.992 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.250 0.750 41 H 0.173 0.827 42 H 0.199 0.801 43 H 0.212 0.788 44 H 0.187 0.813 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 12.705 -27.833 9.517 32.042 hybrid contribution -0.363 2.055 -0.857 2.256 sum 12.342 -25.778 8.660 29.864 Atomic orbital electron populations 1.70134 1.06264 1.25391 1.57580 1.25691 0.96520 1.01024 1.02302 0.85269 0.77317 0.79291 0.78178 1.19910 1.22085 1.20877 1.19270 0.90770 0.83599 1.43115 0.90454 1.44736 1.06820 1.02197 1.79729 1.21262 0.84149 0.93546 0.96231 1.22872 0.99668 0.95248 0.99446 1.22612 0.95113 0.97502 0.99821 1.21358 0.96173 0.86645 0.91772 0.92665 1.21689 0.95685 0.83654 0.98471 1.45538 1.60452 1.17984 1.11094 1.17548 0.77017 0.85485 0.82299 1.90778 1.59628 1.50903 1.46564 1.20183 1.17110 0.97604 0.95319 1.24795 0.93666 0.88283 1.01418 1.77204 1.23336 1.24205 0.87587 1.45595 1.43815 1.11052 1.07887 1.18935 1.00879 0.93256 0.88177 1.21649 0.95499 0.91155 1.02236 1.22527 0.97978 1.02599 0.92388 1.23541 0.95020 0.90910 0.97439 1.67835 1.09541 1.07528 1.34176 1.22797 0.97475 1.01060 0.86568 1.23310 0.92728 0.85462 1.00701 0.94378 0.94698 0.99177 0.91015 0.90083 0.87303 0.91770 0.94550 0.94769 0.74717 0.74995 0.82743 0.80050 0.78842 0.81274 0.77808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.27 10.58 21.65 0.23 -57.04 16 2 C -0.06 -3.54 5.47 84.86 0.46 -3.07 16 3 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.24 -13.22 9.76 84.03 0.82 -12.40 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -30.27 3.13 -668.28 -2.09 -32.36 16 10 C 0.17 8.36 5.41 86.85 0.47 8.83 16 11 C -0.13 -4.51 7.08 31.98 0.23 -4.28 16 12 C -0.11 -3.26 6.10 31.78 0.19 -3.06 16 13 C 0.15 5.46 3.22 45.34 0.15 5.61 16 14 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 15 C 0.13 4.99 5.07 86.38 0.44 5.43 16 16 N -0.70 -19.31 5.32 -466.37 -2.48 -21.79 16 17 C 0.59 17.98 7.81 86.66 0.68 18.66 16 18 O -0.60 -24.12 16.89 -4.05 -0.07 -24.19 16 19 C -0.29 -6.60 6.13 -20.14 -0.12 -6.72 16 20 C 0.11 1.84 11.50 85.66 0.99 2.82 16 21 N -0.31 -5.96 11.85 -56.23 -0.67 -6.62 16 22 N -0.31 -6.06 3.77 -185.90 -0.70 -6.76 16 23 C 0.08 1.36 6.70 38.19 0.26 1.62 16 24 C -0.08 -0.98 9.77 22.58 0.22 -0.76 16 25 C -0.14 -1.00 10.11 22.34 0.23 -0.77 16 26 C 0.09 0.83 11.18 84.70 0.95 1.78 16 27 N -0.48 -7.58 10.35 -195.34 -2.02 -9.60 16 28 C 0.08 1.28 10.62 84.83 0.90 2.18 16 29 C 0.13 2.63 10.62 84.24 0.89 3.52 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.03 1.91 6.94 -2.38 -0.02 1.89 16 32 H -0.01 -0.53 8.06 -2.39 -0.02 -0.55 16 33 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.06 1.89 7.81 -2.39 -0.02 1.87 16 37 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 38 H 0.03 1.52 7.92 -2.39 -0.02 1.50 16 39 H 0.42 7.78 7.29 -92.71 -0.68 7.11 16 40 H 0.23 1.99 7.50 -2.91 -0.02 1.96 16 41 H 0.15 1.79 7.77 -2.91 -0.02 1.77 16 42 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 43 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 44 H 0.17 2.25 6.74 -2.91 -0.02 2.23 16 45 H 0.21 3.56 7.04 -2.91 -0.02 3.54 16 Total: -1.00 -80.72 379.28 2.32 -78.41 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.35 Total: 12.02 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 7.74 Total: 19.37 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -7.73 Total: -134.19 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.07 Total: -24.19 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -80.72 2.32 -78.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027927670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.589 kcal (2) G-P(sol) polarization free energy of solvation -80.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds