Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47055 * 269.99699 * 3 2 1 5 5 H 1.48502 * 109.47122 * 30.00052 * 3 2 1 6 6 H 1.48500 * 109.46859 * 150.00011 * 3 2 1 7 7 C 1.38813 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00118 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99760 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64754 * 345.71128 * 9 7 2 11 11 C 1.54911 * 104.83033 * 204.16280 * 10 9 7 12 12 C 1.55396 * 101.66790 * 323.07706 * 11 10 9 13 13 C 1.47018 * 125.64652 * 165.75476 * 9 7 2 14 14 H 1.08998 * 109.88491 * 59.33334 * 13 9 7 15 15 C 1.53005 * 109.88370 * 298.32330 * 13 9 7 16 16 N 1.46495 * 109.47001 * 174.60302 * 15 13 9 17 17 C 1.34780 * 119.99714 * 174.71612 * 16 15 13 18 18 O 1.21576 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.47676 * 120.00060 * 179.97438 * 17 16 15 20 20 C 1.39705 * 120.07946 * 180.02562 * 19 17 16 21 21 C 1.37723 * 119.92230 * 179.97438 * 20 19 17 22 22 C 1.39053 * 120.07630 * 359.97438 * 21 20 19 23 23 N 1.39864 * 119.91849 * 179.97438 * 22 21 20 24 24 C 1.34806 * 126.84295 * 180.02562 * 23 22 21 25 25 N 1.30824 * 108.01988 * 180.20820 * 24 23 22 26 26 C 1.33293 * 109.84570 * 359.62008 * 25 24 23 27 27 N 1.30722 * 109.01413 * 0.37991 * 26 25 24 28 28 C 1.39039 * 120.15835 * 0.25801 * 22 21 20 29 29 C 1.37736 * 120.08020 * 359.48697 * 28 22 21 30 30 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36691 * 323.00752 * 10 9 7 32 32 H 1.09002 * 110.36217 * 85.32649 * 10 9 7 33 33 H 1.08996 * 110.99851 * 81.06780 * 11 10 9 34 34 H 1.09001 * 111.00266 * 204.88102 * 11 10 9 35 35 H 1.09007 * 110.69728 * 277.05210 * 12 11 10 36 36 H 1.08993 * 110.85646 * 153.69972 * 12 11 10 37 37 H 1.08995 * 109.47082 * 54.59558 * 15 13 9 38 38 H 1.09004 * 109.46676 * 294.60351 * 15 13 9 39 39 H 0.96996 * 120.00080 * 354.71727 * 16 15 13 40 40 H 1.08000 * 120.03694 * 359.97438 * 20 19 17 41 41 H 1.07998 * 119.96280 * 180.02562 * 21 20 19 42 42 H 1.08000 * 125.99520 * 359.93550 * 24 23 22 43 43 H 1.08004 * 125.49539 * 180.17973 * 26 25 24 44 44 H 1.07997 * 119.96165 * 179.71601 * 28 22 21 45 45 H 1.07996 * 120.04395 * 180.25173 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1092 -2.5518 0.2957 11 6 -0.2508 -4.0189 0.7724 12 6 0.7683 -4.7478 -0.1468 13 6 1.9000 -3.7090 -0.2950 14 1 2.7011 -3.9305 0.4100 15 6 2.4441 -3.7328 -1.7248 16 7 3.1277 -5.0058 -1.9660 17 6 3.5966 -5.2965 -3.1957 18 8 3.4526 -4.5021 -4.1047 19 6 4.2862 -6.5796 -3.4388 20 6 4.7733 -6.8824 -4.7127 21 6 5.4164 -8.0797 -4.9356 22 6 5.5815 -8.9864 -3.8944 23 7 6.2347 -10.2016 -4.1246 24 6 6.4697 -11.1763 -3.2236 25 7 7.1076 -12.1436 -3.8310 26 6 7.2900 -11.8300 -5.1136 27 7 6.7759 -10.6498 -5.3407 28 6 5.0938 -8.6905 -2.6265 29 6 4.4543 -7.4928 -2.3950 30 1 -0.4850 0.8400 0.0004 31 1 -0.4143 -1.8651 1.0852 32 1 -0.7034 -2.3859 -0.6030 33 1 0.0310 -4.1179 1.8206 34 1 -1.2628 -4.3880 0.6055 35 1 0.3216 -4.9722 -1.1154 36 1 1.1386 -5.6562 0.3281 37 1 3.1477 -2.9113 -1.8595 38 1 1.6194 -3.6240 -2.4293 39 1 3.2429 -5.6395 -1.2407 40 1 4.6457 -6.1784 -5.5217 41 1 5.7935 -8.3142 -5.9200 42 1 6.1854 -11.1597 -2.1818 43 1 7.7859 -12.4495 -5.8462 44 1 5.2198 -9.3990 -1.8212 45 1 4.0792 -7.2618 -1.4089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027945751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = 116.233347 kcal Electronic energy + Delta-G solvation = -28092.788066 eV Core-core repulsion = 24113.208728 eV Total energy + Delta-G solvation = -3979.579337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.81302 -40.35255 -38.76953 -37.60493 -34.64096 -34.40856 -32.54745 -32.15667 -31.38583 -30.40738 -29.56305 -28.55359 -25.48742 -24.70861 -23.94583 -23.65350 -22.26006 -21.58038 -20.59261 -20.18730 -19.67237 -18.98601 -17.86856 -16.67882 -16.38670 -16.34371 -15.99537 -15.45119 -15.07012 -14.89829 -14.73545 -14.64286 -14.41109 -14.03803 -13.90509 -13.57981 -13.50194 -12.98719 -12.90181 -12.72263 -12.14014 -11.94417 -11.80816 -11.54797 -11.39407 -11.22531 -10.98196 -10.83264 -10.63899 -10.40461 -10.31598 -10.16298 -10.04829 -9.91260 -9.82581 -9.71874 -9.59400 -8.95179 -8.70541 -8.61650 -6.89282 -5.81111 -3.18065 -0.01486 0.80995 1.33708 1.65407 2.38885 2.74045 3.24305 3.37925 3.43426 3.44085 3.56076 3.72356 3.86483 4.20733 4.34602 4.42616 4.46038 4.60775 4.78846 4.96184 5.02598 5.27017 5.33972 5.42537 5.43622 5.52223 5.56610 5.60759 5.75021 5.80420 5.84673 5.92528 5.99479 6.07791 6.12727 6.17768 6.39544 6.46275 6.48417 6.53846 6.62424 6.73403 6.98362 7.46429 7.47107 7.55958 7.63977 7.74909 8.20597 8.31439 9.12747 9.73342 10.40067 11.30692 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.001996 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.201501 B =14026.593552 C =14700.796719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.107 3.893 16 N -0.715 5.715 17 C 0.549 3.451 18 O -0.534 6.534 19 C -0.126 4.126 20 C -0.038 4.038 21 C -0.118 4.118 22 C 0.164 3.836 23 N -0.330 5.330 24 C 0.264 3.736 25 N -0.537 5.537 26 C 0.207 3.793 27 N -0.312 5.312 28 C -0.139 4.139 29 C -0.061 4.061 30 H 0.254 0.746 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.394 0.606 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.225 0.775 43 H 0.224 0.776 44 H 0.139 0.861 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.702 -22.920 -3.998 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.018 4.018 16 N -0.366 5.366 17 C 0.334 3.666 18 O -0.412 6.412 19 C -0.130 4.130 20 C -0.058 4.058 21 C -0.138 4.138 22 C 0.071 3.929 23 N -0.114 5.114 24 C -0.032 4.032 25 N -0.263 5.263 26 C -0.095 4.095 27 N -0.137 5.137 28 C -0.160 4.160 29 C -0.080 4.080 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.229 0.771 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.241 0.759 43 H 0.240 0.760 44 H 0.156 0.844 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.643 -22.013 -5.164 24.581 hybrid contribution 0.457 0.591 0.423 0.858 sum 10.099 -21.422 -4.742 24.153 Atomic orbital electron populations 1.69931 1.05026 1.25383 1.55698 1.24920 0.95694 0.97915 1.01307 0.86144 0.78701 0.83317 0.77742 1.21358 1.21626 1.20571 1.18973 0.90392 0.82144 1.44867 0.90620 1.44484 1.06196 1.00870 1.79675 1.21470 0.84723 0.90220 0.98900 1.23050 0.97520 0.99573 0.98588 1.22660 0.97120 0.96888 0.99802 1.21130 0.94514 0.88196 0.91846 0.94519 1.22335 0.96615 0.83165 0.99645 1.46079 1.58266 1.21841 1.10400 1.18129 0.79212 0.85905 0.83304 1.90812 1.57564 1.49624 1.43220 1.20272 1.02174 0.95760 0.94803 1.21254 0.92602 0.95295 0.96634 1.20912 1.00728 0.93117 0.99066 1.17738 0.96253 0.83714 0.95218 1.47732 1.41693 1.14224 1.07790 1.26289 0.94574 0.83937 0.98362 1.70657 1.20648 1.28203 1.06781 1.26229 0.97658 0.92161 0.93486 1.78167 1.18163 1.14901 1.02486 1.20698 1.01787 0.98921 0.94609 1.21173 0.95882 0.91951 0.98997 0.93547 0.90842 0.95593 0.92298 0.92314 0.91792 0.92389 0.91152 0.91375 0.77113 0.83367 0.83801 0.75901 0.75974 0.84373 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.16 10.56 55.49 0.59 -25.58 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.24 -6.28 9.71 -15.06 -0.15 -6.43 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.08 3.13 -162.57 -0.51 -14.59 16 10 C 0.17 3.96 5.42 -2.53 -0.01 3.95 16 11 C -0.15 -2.59 7.09 -24.45 -0.17 -2.77 16 12 C -0.13 -1.97 6.26 -24.76 -0.16 -2.12 16 13 C 0.15 2.82 3.18 -66.95 -0.21 2.60 16 14 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 15 C 0.11 1.96 5.11 -4.04 -0.02 1.93 16 16 N -0.71 -9.81 5.32 -61.30 -0.33 -10.14 16 17 C 0.55 8.05 7.77 -12.40 -0.10 7.95 16 18 O -0.53 -10.17 16.33 5.30 0.09 -10.09 16 19 C -0.13 -1.37 5.88 -104.95 -0.62 -1.99 16 20 C -0.04 -0.40 9.58 -39.22 -0.38 -0.78 16 21 C -0.12 -1.11 9.66 -39.47 -0.38 -1.49 16 22 C 0.16 1.40 6.70 -83.59 -0.56 0.84 16 23 N -0.33 -2.91 3.81 -11.77 -0.04 -2.95 16 24 C 0.26 1.85 11.97 -90.32 -1.08 0.76 16 25 N -0.54 -4.68 11.19 -15.73 -0.18 -4.85 16 26 C 0.21 1.66 13.03 -91.76 -1.20 0.46 16 27 N -0.31 -3.06 12.03 29.30 0.35 -2.71 16 28 C -0.14 -0.90 9.45 -39.47 -0.37 -1.28 16 29 C -0.06 -0.46 9.53 -39.22 -0.37 -0.83 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 32 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.99 7.76 -51.92 -0.40 0.59 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.48 7.84 -51.93 -0.41 1.07 16 38 H 0.07 1.40 8.01 -51.93 -0.42 0.98 16 39 H 0.39 4.02 6.44 -40.82 -0.26 3.75 16 40 H 0.15 1.58 7.64 -52.49 -0.40 1.18 16 41 H 0.14 1.30 7.72 -52.49 -0.41 0.90 16 42 H 0.22 0.54 7.08 -52.49 -0.37 0.17 16 43 H 0.22 0.92 8.06 -52.48 -0.42 0.49 16 44 H 0.14 0.42 6.78 -52.49 -0.36 0.07 16 45 H 0.14 0.74 6.39 -52.49 -0.34 0.40 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -34.67 376.46 -11.05 -45.72 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.80 Total: 2.08 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -5.87 Total: 0.71 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.12 Total: -60.83 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.67 -11.05 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027945751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.952 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds