Wall clock time and date at job start Sat Apr 11 2020 06:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47055 * 269.99699 * 3 2 1 5 5 H 1.48502 * 109.47122 * 30.00052 * 3 2 1 6 6 H 1.48500 * 109.46859 * 150.00011 * 3 2 1 7 7 C 1.38813 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00118 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99760 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64754 * 345.71128 * 9 7 2 11 11 C 1.54911 * 104.83033 * 204.16280 * 10 9 7 12 12 C 1.55396 * 101.66790 * 323.07706 * 11 10 9 13 13 C 1.47018 * 125.64652 * 165.75476 * 9 7 2 14 14 H 1.08998 * 109.88491 * 59.33334 * 13 9 7 15 15 C 1.53005 * 109.88370 * 298.32330 * 13 9 7 16 16 N 1.46495 * 109.47001 * 174.60302 * 15 13 9 17 17 C 1.34780 * 119.99714 * 174.71612 * 16 15 13 18 18 O 1.21576 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.47676 * 120.00060 * 179.97438 * 17 16 15 20 20 C 1.39705 * 120.07946 * 180.02562 * 19 17 16 21 21 C 1.37723 * 119.92230 * 179.97438 * 20 19 17 22 22 C 1.39053 * 120.07630 * 359.97438 * 21 20 19 23 23 N 1.39864 * 119.91849 * 179.97438 * 22 21 20 24 24 C 1.34806 * 126.84295 * 180.02562 * 23 22 21 25 25 N 1.30824 * 108.01988 * 180.20820 * 24 23 22 26 26 C 1.33293 * 109.84570 * 359.62008 * 25 24 23 27 27 N 1.30722 * 109.01413 * 0.37991 * 26 25 24 28 28 C 1.39039 * 120.15835 * 0.25801 * 22 21 20 29 29 C 1.37736 * 120.08020 * 359.48697 * 28 22 21 30 30 H 0.96996 * 120.00064 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36691 * 323.00752 * 10 9 7 32 32 H 1.09002 * 110.36217 * 85.32649 * 10 9 7 33 33 H 1.08996 * 110.99851 * 81.06780 * 11 10 9 34 34 H 1.09001 * 111.00266 * 204.88102 * 11 10 9 35 35 H 1.09007 * 110.69728 * 277.05210 * 12 11 10 36 36 H 1.08993 * 110.85646 * 153.69972 * 12 11 10 37 37 H 1.08995 * 109.47082 * 54.59558 * 15 13 9 38 38 H 1.09004 * 109.46676 * 294.60351 * 15 13 9 39 39 H 0.96996 * 120.00080 * 354.71727 * 16 15 13 40 40 H 1.08000 * 120.03694 * 359.97438 * 20 19 17 41 41 H 1.07998 * 119.96280 * 180.02562 * 21 20 19 42 42 H 1.08000 * 125.99520 * 359.93550 * 24 23 22 43 43 H 1.08004 * 125.49539 * 180.17973 * 26 25 24 44 44 H 1.07997 * 119.96165 * 179.71601 * 28 22 21 45 45 H 1.07996 * 120.04395 * 180.25173 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1092 -2.5518 0.2957 11 6 -0.2508 -4.0189 0.7724 12 6 0.7683 -4.7478 -0.1468 13 6 1.9000 -3.7090 -0.2950 14 1 2.7011 -3.9305 0.4100 15 6 2.4441 -3.7328 -1.7248 16 7 3.1277 -5.0058 -1.9660 17 6 3.5966 -5.2965 -3.1957 18 8 3.4526 -4.5021 -4.1047 19 6 4.2862 -6.5796 -3.4388 20 6 4.7733 -6.8824 -4.7127 21 6 5.4164 -8.0797 -4.9356 22 6 5.5815 -8.9864 -3.8944 23 7 6.2347 -10.2016 -4.1246 24 6 6.4697 -11.1763 -3.2236 25 7 7.1076 -12.1436 -3.8310 26 6 7.2900 -11.8300 -5.1136 27 7 6.7759 -10.6498 -5.3407 28 6 5.0938 -8.6905 -2.6265 29 6 4.4543 -7.4928 -2.3950 30 1 -0.4850 0.8400 0.0004 31 1 -0.4143 -1.8651 1.0852 32 1 -0.7034 -2.3859 -0.6030 33 1 0.0310 -4.1179 1.8206 34 1 -1.2628 -4.3880 0.6055 35 1 0.3216 -4.9722 -1.1154 36 1 1.1386 -5.6562 0.3281 37 1 3.1477 -2.9113 -1.8595 38 1 1.6194 -3.6240 -2.4293 39 1 3.2429 -5.6395 -1.2407 40 1 4.6457 -6.1784 -5.5217 41 1 5.7935 -8.3142 -5.9200 42 1 6.1854 -11.1597 -2.1818 43 1 7.7859 -12.4495 -5.8462 44 1 5.2198 -9.3990 -1.8212 45 1 4.0792 -7.2618 -1.4089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027945751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:15 Heat of formation + Delta-G solvation = 95.210545 kcal Electronic energy + Delta-G solvation = -28093.699683 eV Core-core repulsion = 24113.208728 eV Total energy + Delta-G solvation = -3980.490954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.37777 -41.33121 -39.80664 -39.07647 -35.87986 -35.26314 -34.40011 -32.77040 -32.11143 -31.47845 -31.05894 -29.91111 -26.81612 -26.18041 -25.03775 -24.43798 -23.06107 -22.17404 -22.00968 -21.47543 -21.13395 -19.65391 -19.08349 -18.36350 -17.48076 -16.93845 -16.84315 -16.62880 -16.42440 -16.23418 -15.72539 -15.63751 -15.45570 -15.18608 -14.86748 -14.74139 -14.42812 -14.03417 -13.89992 -13.80048 -13.64675 -13.37215 -13.29966 -12.98293 -12.84038 -12.69271 -12.17496 -12.00987 -11.93400 -11.86521 -11.70564 -11.47294 -11.37323 -11.24897 -11.09997 -11.00863 -10.68321 -10.22413 -10.15725 -9.50713 -8.85155 -7.88269 -5.25403 -0.69924 0.18784 0.69984 1.10357 1.43944 1.46647 1.53815 1.76725 1.89746 2.07670 2.49579 2.72448 3.27838 3.31631 3.35713 3.59051 3.66850 3.79937 3.85998 3.93216 3.99338 4.01299 4.13410 4.29298 4.33876 4.44146 4.47938 4.56730 4.75233 4.84133 4.92106 4.92708 4.99896 5.03508 5.15952 5.17237 5.22891 5.27048 5.32343 5.34629 5.48900 5.49605 5.58949 5.68608 5.80091 5.91217 6.23855 6.54663 6.91314 7.09547 7.20491 7.77328 8.42570 9.22489 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022196 B = 0.001996 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.201501 B =14026.593552 C =14700.796719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.970 3.030 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.237 4.237 8 H 0.078 0.922 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.134 4.134 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.058 0.942 15 C 0.127 3.873 16 N -0.697 5.697 17 C 0.549 3.451 18 O -0.590 6.590 19 C -0.145 4.145 20 C -0.048 4.048 21 C -0.128 4.128 22 C 0.165 3.835 23 N -0.343 5.343 24 C 0.274 3.726 25 N -0.563 5.563 26 C 0.208 3.792 27 N -0.351 5.351 28 C -0.122 4.122 29 C -0.044 4.044 30 H 0.247 0.753 31 H 0.036 0.964 32 H -0.011 1.011 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.111 0.889 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.417 0.583 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.271 0.729 43 H 0.250 0.750 44 H 0.187 0.813 45 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 -26.839 -1.626 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.076 0.924 15 C 0.001 3.999 16 N -0.349 5.349 17 C 0.337 3.663 18 O -0.472 6.472 19 C -0.149 4.149 20 C -0.068 4.068 21 C -0.148 4.148 22 C 0.072 3.928 23 N -0.127 5.127 24 C -0.020 4.020 25 N -0.288 5.288 26 C -0.094 4.094 27 N -0.176 5.176 28 C -0.143 4.143 29 C -0.063 4.063 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.007 0.993 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.256 0.744 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.286 0.714 43 H 0.266 0.734 44 H 0.204 0.796 45 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.110 -26.005 -2.767 28.414 hybrid contribution 0.103 1.651 -0.351 1.691 sum 11.213 -24.354 -3.118 26.992 Atomic orbital electron populations 1.70136 1.06264 1.25317 1.57647 1.25680 0.96512 1.01009 1.02363 0.85208 0.78034 0.79693 0.77209 1.21987 1.21931 1.19075 1.19302 0.90787 0.83577 1.42953 0.90376 1.44752 1.06616 1.02120 1.80024 1.21282 0.84095 0.93697 0.96241 1.22910 0.99636 0.95121 0.99538 1.22672 0.95025 0.97471 0.99885 1.21374 0.96225 0.86652 0.91690 0.92437 1.21754 0.94963 0.84313 0.98904 1.45699 1.57534 1.20573 1.11120 1.18728 0.78338 0.86709 0.82515 1.90786 1.59689 1.51766 1.44934 1.19955 1.03969 0.94861 0.96122 1.21119 0.93542 0.95630 0.96507 1.20813 1.01277 0.93181 0.99575 1.17977 0.95649 0.83385 0.95802 1.47793 1.42287 1.14622 1.07998 1.27246 0.92637 0.82536 0.99613 1.70703 1.21785 1.29206 1.07151 1.26844 0.96687 0.91812 0.94009 1.78143 1.19598 1.15989 1.03873 1.21143 0.99530 0.98947 0.94648 1.21485 0.94610 0.91136 0.99101 0.94384 0.94571 0.99304 0.90922 0.90095 0.91854 0.87028 0.94742 0.94473 0.74430 0.85158 0.84486 0.71409 0.73418 0.79615 0.80772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.69 10.56 21.65 0.23 -56.46 16 2 C -0.06 -3.51 5.47 84.86 0.46 -3.05 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 4 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.24 -12.92 9.71 84.03 0.82 -12.11 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.61 -29.60 3.13 -668.26 -2.09 -31.69 16 10 C 0.17 8.13 5.42 86.86 0.47 8.60 16 11 C -0.13 -4.33 7.09 32.07 0.23 -4.10 16 12 C -0.11 -3.08 6.26 31.87 0.20 -2.88 16 13 C 0.15 5.24 3.18 45.34 0.14 5.38 16 14 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 15 C 0.13 4.66 5.11 86.38 0.44 5.10 16 16 N -0.70 -17.90 5.32 -466.13 -2.48 -20.38 16 17 C 0.55 15.97 7.77 86.74 0.67 16.65 16 18 O -0.59 -23.67 16.33 -3.96 -0.06 -23.74 16 19 C -0.15 -2.94 5.88 -20.08 -0.12 -3.06 16 20 C -0.05 -1.02 9.58 22.50 0.22 -0.81 16 21 C -0.13 -2.34 9.66 22.34 0.22 -2.13 16 22 C 0.17 2.35 6.70 38.25 0.26 2.61 16 23 N -0.34 -5.07 3.81 -191.16 -0.73 -5.80 16 24 C 0.27 2.71 11.97 180.24 2.16 4.87 16 25 N -0.56 -8.17 11.19 -203.68 -2.28 -10.45 16 26 C 0.21 2.96 13.03 180.75 2.35 5.31 16 27 N -0.35 -6.42 12.03 -61.21 -0.74 -7.16 16 28 C -0.12 -0.95 9.45 22.34 0.21 -0.74 16 29 C -0.04 -0.47 9.53 22.51 0.21 -0.26 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.04 1.94 6.90 -2.39 -0.02 1.93 16 32 H -0.01 -0.59 8.07 -2.39 -0.02 -0.61 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 1.77 7.76 -2.38 -0.02 1.75 16 36 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.03 1.50 7.84 -2.39 -0.02 1.48 16 38 H 0.04 1.58 8.01 -2.38 -0.02 1.56 16 39 H 0.42 6.69 6.44 -92.71 -0.60 6.09 16 40 H 0.13 3.11 7.64 -2.91 -0.02 3.09 16 41 H 0.14 2.60 7.72 -2.91 -0.02 2.58 16 42 H 0.27 -0.41 7.08 -2.91 -0.02 -0.43 16 43 H 0.25 1.61 8.06 -2.91 -0.02 1.58 16 44 H 0.19 -0.33 6.78 -2.91 -0.02 -0.35 16 45 H 0.18 0.66 6.39 -2.91 -0.02 0.64 16 Total: -1.00 -83.83 376.46 3.26 -80.57 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.43 Total: 7.64 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 8.94 Total: 19.39 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -8.08 Total: -131.94 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -83.83 3.26 -80.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027945751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.779 kcal (2) G-P(sol) polarization free energy of solvation -83.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds