Wall clock time and date at job start Sat Apr 11 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00183 * 2 1 4 4 H 1.48501 * 109.46986 * 270.00250 * 3 2 1 5 5 H 1.48495 * 109.46935 * 30.00161 * 3 2 1 6 6 H 1.48500 * 109.47213 * 149.99832 * 3 2 1 7 7 C 1.38815 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00380 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.47428 * 125.64844 * 13.57632 * 9 7 2 11 11 C 1.54910 * 104.83103 * 155.89531 * 10 9 7 12 12 C 1.55161 * 101.58155 * 37.01008 * 11 10 9 13 13 C 1.47022 * 125.64943 * 193.60907 * 9 7 2 14 14 H 1.09007 * 109.87985 * 300.45350 * 13 9 7 15 15 C 1.52996 * 109.88369 * 61.61492 * 13 9 7 16 16 N 1.46505 * 109.47317 * 182.38517 * 15 13 9 17 17 C 1.34768 * 120.00232 * 185.09286 * 16 15 13 18 18 O 1.21561 * 120.00080 * 359.97438 * 17 16 15 19 19 C 1.47834 * 120.00234 * 180.02562 * 17 16 15 20 20 N 1.34566 * 126.02031 * 359.68311 * 19 17 16 21 21 C 1.30871 * 107.29034 * 179.83742 * 20 19 17 22 22 N 1.34889 * 107.58894 * 0.42973 * 21 20 19 23 23 C 1.40141 * 125.77122 * 179.76558 * 22 21 20 24 24 C 1.38855 * 120.06707 * 359.70692 * 23 22 21 25 25 C 1.38119 * 119.92636 * 179.72078 * 24 23 22 26 26 C 1.38273 * 120.07030 * 0.57359 * 25 24 23 27 27 C 1.38287 * 120.13803 * 359.67945 * 26 25 24 28 28 C 1.38113 * 120.06402 * 0.04290 * 27 26 25 29 29 N 1.28855 * 108.45708 * 359.72647 * 22 21 20 30 30 H 0.96999 * 120.00141 * 359.97438 * 1 2 3 31 31 H 1.08993 * 110.36495 * 37.05646 * 10 9 7 32 32 H 1.09001 * 110.46026 * 274.77970 * 10 9 7 33 33 H 1.08998 * 111.00734 * 278.93684 * 11 10 9 34 34 H 1.08997 * 111.00645 * 155.08192 * 11 10 9 35 35 H 1.08995 * 110.72176 * 206.13634 * 12 11 10 36 36 H 1.09000 * 110.71866 * 82.86100 * 12 11 10 37 37 H 1.08998 * 109.47299 * 302.38027 * 15 13 9 38 38 H 1.08996 * 109.47453 * 62.38172 * 15 13 9 39 39 H 0.97002 * 119.99229 * 5.08613 * 16 15 13 40 40 H 1.08004 * 126.21028 * 180.11955 * 21 20 19 41 41 H 1.08001 * 120.03275 * 359.97438 * 24 23 22 42 42 H 1.08003 * 119.95967 * 180.27623 * 25 24 23 43 43 H 1.08000 * 119.93435 * 179.69756 * 26 25 24 44 44 H 1.07999 * 119.96567 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.03290 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1125 -2.5497 -0.2835 11 6 -0.2595 -4.0138 -0.7677 12 6 0.7666 -4.7457 0.1374 13 6 1.9026 -3.7109 0.2788 14 1 2.6945 -3.9294 -0.4377 15 6 2.4618 -3.7435 1.7026 16 7 3.0848 -5.0456 1.9529 17 6 3.5568 -5.3421 3.1799 18 8 3.4660 -4.5289 4.0789 19 6 4.1860 -6.6558 3.4324 20 7 4.3447 -7.6433 2.5322 21 6 4.9441 -8.6336 3.1427 22 7 5.1467 -8.2603 4.4230 23 6 5.7577 -9.0378 5.4161 24 6 6.2107 -10.3161 5.1183 25 6 6.8177 -11.0776 6.0978 26 6 6.9638 -10.5728 7.3767 27 6 6.5090 -9.3020 7.6777 28 6 5.9064 -8.5334 6.7012 29 7 4.6841 -7.0678 4.5783 30 1 -0.4850 0.8400 0.0004 31 1 -0.4257 -1.8583 -1.0656 32 1 -0.6986 -2.3887 0.6213 33 1 0.0112 -4.1067 -1.8194 34 1 -1.2694 -4.3840 -0.5917 35 1 1.1292 -5.6528 -0.3461 36 1 0.3295 -4.9739 1.1095 37 1 3.2067 -2.9561 1.8185 38 1 1.6521 -3.5852 2.4148 39 1 3.1575 -5.6943 1.2354 40 1 5.2214 -9.5802 2.7028 41 1 6.0921 -10.7129 4.1209 42 1 7.1742 -12.0703 5.8656 43 1 7.4344 -11.1720 8.1422 44 1 6.6250 -8.9103 8.6775 45 1 5.5510 -7.5412 6.9369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027954540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:24 Heat of formation + Delta-G solvation = 119.760548 kcal Electronic energy + Delta-G solvation = -28126.131489 eV Core-core repulsion = 24146.705102 eV Total energy + Delta-G solvation = -3979.426386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.92646 -39.83942 -39.19035 -37.54392 -34.96799 -34.24481 -32.50700 -32.42391 -31.44621 -30.26134 -29.55087 -28.62999 -25.66840 -24.59536 -24.42860 -23.53383 -22.37597 -21.72755 -20.48531 -20.06429 -19.55950 -19.03940 -17.50420 -16.98851 -16.79939 -16.56100 -15.99692 -15.47238 -15.38542 -14.89558 -14.77724 -14.57766 -14.27965 -14.03876 -13.83653 -13.53852 -13.32788 -12.96161 -12.63258 -12.27012 -12.05089 -11.84871 -11.73004 -11.66378 -11.36527 -11.25945 -10.92333 -10.76749 -10.74314 -10.24685 -10.20105 -10.14696 -10.03698 -9.84177 -9.76243 -9.66833 -9.65334 -9.00273 -8.65852 -8.54629 -6.81938 -5.73231 -3.09740 0.16526 0.68405 1.51147 1.76600 1.92294 3.12948 3.13899 3.42764 3.44419 3.48671 3.50616 3.80099 3.99773 4.20447 4.35768 4.49236 4.53287 4.59625 4.70737 4.90855 4.99865 5.34100 5.37220 5.45176 5.54043 5.59202 5.62969 5.66561 5.74447 5.85267 5.86274 6.00257 6.08764 6.10131 6.17188 6.30927 6.40732 6.50385 6.56757 6.63194 6.73028 6.83185 7.08872 7.55080 7.57501 7.64366 7.83031 7.87556 8.28456 8.38923 9.20676 9.81134 10.48184 11.38383 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002028 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.142666 B =13804.082631 C =14652.903385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.040 0.960 15 C 0.109 3.891 16 N -0.698 5.698 17 C 0.605 3.395 18 O -0.518 6.518 19 C 0.162 3.838 20 N -0.474 5.474 21 C 0.196 3.804 22 N -0.255 5.255 23 C 0.130 3.870 24 C -0.122 4.122 25 C -0.098 4.098 26 C -0.115 4.115 27 C -0.098 4.098 28 C -0.102 4.102 29 N -0.254 5.254 30 H 0.253 0.747 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.406 0.594 40 H 0.228 0.772 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.137 0.863 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.359 -26.831 9.929 31.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.058 0.942 15 C -0.015 4.015 16 N -0.349 5.349 17 C 0.386 3.614 18 O -0.390 6.390 19 C -0.119 4.119 20 N -0.199 5.199 21 C -0.099 4.099 22 N -0.044 5.044 23 C 0.039 3.961 24 C -0.143 4.143 25 C -0.116 4.116 26 C -0.134 4.134 27 C -0.117 4.117 28 C -0.122 4.122 29 N -0.090 5.090 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.241 0.759 40 H 0.245 0.755 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.032 -25.446 10.727 30.122 hybrid contribution 0.644 0.210 -0.254 0.723 sum 12.676 -25.237 10.473 30.120 Atomic orbital electron populations 1.69934 1.05001 1.25270 1.55987 1.24905 0.95693 0.97864 1.01488 0.86138 0.78820 0.83403 0.77532 1.21562 1.21622 1.20511 1.19006 0.90449 0.82171 1.44499 0.90547 1.44501 1.05813 1.00735 1.80171 1.21478 0.84603 0.90348 0.98903 1.23009 0.97472 0.99548 0.98685 1.22614 0.96992 0.97036 0.99842 1.21135 0.94578 0.88077 0.91858 0.94211 1.22393 0.97537 0.81777 0.99832 1.45863 1.59049 1.19560 1.10472 1.16296 0.78804 0.82511 0.83837 1.90853 1.56525 1.47707 1.43958 1.24138 1.03823 0.97546 0.86349 1.71364 1.17269 1.00250 1.30971 1.26580 0.99589 1.01502 0.82193 1.44597 1.39966 1.10341 1.09491 1.17677 0.99609 0.90951 0.87823 1.20870 1.00428 0.91811 1.01190 1.21028 0.98071 0.99950 0.92571 1.21376 0.99228 0.95834 0.96962 1.21174 0.96990 0.94071 0.99449 1.21135 0.98867 1.01563 0.90622 1.74405 1.14155 0.95660 1.24749 0.93621 0.90737 0.95672 0.92273 0.92361 0.92194 0.91820 0.91070 0.91141 0.75910 0.75541 0.84619 0.84489 0.85003 0.84559 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.53 55.49 0.58 -26.29 16 2 C 0.00 -0.07 5.47 -17.43 -0.10 -0.16 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.44 9.77 -15.06 -0.15 -6.58 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -14.75 3.13 -162.57 -0.51 -15.26 16 10 C 0.17 4.13 5.43 -2.53 -0.01 4.12 16 11 C -0.15 -2.77 7.09 -24.58 -0.17 -2.95 16 12 C -0.13 -2.19 6.10 -24.90 -0.15 -2.34 16 13 C 0.15 3.08 3.22 -66.96 -0.22 2.86 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.11 2.19 5.07 -4.04 -0.02 2.17 16 16 N -0.70 -11.82 5.32 -61.26 -0.33 -12.15 16 17 C 0.61 11.15 7.83 -12.34 -0.10 11.05 16 18 O -0.52 -11.41 17.08 5.31 0.09 -11.32 16 19 C 0.16 2.57 7.96 -156.30 -1.24 1.33 16 20 N -0.47 -6.20 11.09 -12.29 -0.14 -6.33 16 21 C 0.20 1.87 11.93 -90.21 -1.08 0.79 16 22 N -0.26 -2.87 3.52 -11.77 -0.04 -2.91 16 23 C 0.13 1.13 6.67 -83.60 -0.56 0.57 16 24 C -0.12 -0.65 9.45 -39.40 -0.37 -1.02 16 25 C -0.10 -0.39 10.04 -39.61 -0.40 -0.79 16 26 C -0.12 -0.50 10.04 -39.55 -0.40 -0.89 16 27 C -0.10 -0.57 10.04 -39.61 -0.40 -0.96 16 28 C -0.10 -0.87 9.61 -39.40 -0.38 -1.25 16 29 N -0.25 -3.86 11.32 32.08 0.36 -3.49 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.07 1.99 6.85 -51.93 -0.36 1.64 16 32 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.10 7.81 -51.93 -0.41 0.69 16 37 H 0.07 1.58 7.92 -51.93 -0.41 1.17 16 38 H 0.07 1.55 8.08 -51.93 -0.42 1.13 16 39 H 0.41 5.94 8.04 -40.82 -0.33 5.61 16 40 H 0.23 0.88 7.01 -52.48 -0.37 0.52 16 41 H 0.14 0.35 6.71 -52.49 -0.35 -0.01 16 42 H 0.14 0.20 8.06 -52.48 -0.42 -0.23 16 43 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 44 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 45 H 0.14 1.41 7.68 -52.49 -0.40 1.01 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -35.29 379.65 -10.98 -46.27 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.97 Total: 2.47 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -5.74 Total: 5.94 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.06 Total: -66.43 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.29 -10.98 -46.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027954540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.035 kcal (2) G-P(sol) polarization free energy of solvation -35.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds