Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48494 * 109.46938 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46897 * 299.99967 * 3 2 1 6 6 H 1.48498 * 109.46892 * 60.00174 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21550 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.47862 * 119.99653 * 179.97438 * 17 16 15 20 20 C 1.39618 * 120.11565 * 359.97438 * 19 17 16 21 21 C 1.37970 * 119.98945 * 180.02562 * 20 19 17 22 22 C 1.38267 * 120.21808 * 0.02562 * 21 20 19 23 23 C 1.38915 * 120.22441 * 0.02562 * 22 21 20 24 24 N 1.40224 * 119.99185 * 179.97438 * 23 22 21 25 25 C 1.34717 * 126.84485 * 4.71447 * 24 23 22 26 26 N 1.30853 * 108.03498 * 179.83446 * 25 24 23 27 27 C 1.33262 * 109.84132 * 0.43902 * 26 25 24 28 28 N 1.30743 * 108.99789 * 359.72412 * 27 26 25 29 29 C 1.38592 * 120.01006 * 359.68136 * 23 22 21 30 30 H 0.97000 * 119.99954 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08998 * 110.62393 * 277.01038 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.97005 * 119.99924 * 4.65894 * 16 15 13 40 40 H 1.08001 * 120.00366 * 0.02572 * 20 19 17 41 41 H 1.08001 * 119.89360 * 180.02562 * 21 20 19 42 42 H 1.08003 * 119.88707 * 180.02562 * 22 21 20 43 43 H 1.08000 * 125.98025 * 359.97323 * 25 24 23 44 44 H 1.07999 * 125.49777 * 179.76576 * 27 26 25 45 45 H 1.08006 * 120.10900 * 180.29823 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4483 -6.5359 -3.3450 20 6 4.4131 -7.5341 -2.3696 21 6 5.0429 -8.7409 -2.5948 22 6 5.7105 -8.9661 -3.7845 23 6 5.7521 -7.9787 -4.7607 24 7 6.4310 -8.2121 -5.9652 25 6 7.0108 -9.3638 -6.3557 26 7 7.5336 -9.1729 -7.5400 27 6 7.3183 -7.9177 -7.9326 28 7 6.6472 -7.2901 -7.0024 29 6 5.1176 -6.7653 -4.5469 30 1 -0.4850 0.8401 -0.0004 31 1 -0.4235 -1.8601 1.0682 32 1 -0.6985 -2.3866 -0.6197 33 1 0.0111 -4.1106 1.8169 34 1 -1.2711 -4.3837 0.5897 35 1 0.3273 -4.9724 -1.1133 36 1 1.1302 -5.6534 0.3396 37 1 1.6415 -3.6192 -2.4206 38 1 3.1751 -2.9297 -1.8368 39 1 3.0990 -5.7164 -1.2672 40 1 3.8930 -7.3617 -1.4389 41 1 5.0143 -9.5122 -1.8393 42 1 6.2013 -9.9129 -3.9553 43 1 7.0373 -10.2841 -5.7912 44 1 7.6448 -7.4886 -8.8683 45 1 5.1448 -5.9983 -5.3068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028128455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 117.141607 kcal Electronic energy + Delta-G solvation = -28249.716006 eV Core-core repulsion = 24270.176054 eV Total energy + Delta-G solvation = -3979.539952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71399 -40.34924 -38.75596 -37.60243 -34.76983 -34.26028 -32.53087 -32.11164 -31.37037 -30.21038 -29.55470 -28.57685 -25.33579 -24.71391 -24.37020 -23.38446 -22.29928 -21.57907 -20.59014 -20.16079 -19.70678 -18.81863 -17.13272 -16.80900 -16.54781 -16.27126 -16.11675 -15.62462 -15.24750 -15.00369 -14.71244 -14.51396 -14.36729 -14.15847 -13.90276 -13.48588 -13.40145 -12.94413 -12.79730 -12.30130 -12.14256 -11.93581 -11.84499 -11.79579 -11.40912 -11.25080 -10.97572 -10.83295 -10.53036 -10.30298 -10.27678 -10.14251 -10.01182 -9.90967 -9.80983 -9.71166 -9.51965 -8.90440 -8.77544 -8.61226 -6.88837 -5.80008 -3.16896 0.15030 0.57801 1.50391 1.72890 2.48510 2.73363 3.20033 3.38314 3.45020 3.46626 3.55411 3.78973 3.98900 4.26423 4.36343 4.44883 4.48395 4.62211 4.70298 4.94243 5.02251 5.27794 5.33677 5.35692 5.43486 5.57413 5.59574 5.74286 5.75654 5.81994 5.90054 5.95402 5.98517 6.05517 6.12771 6.17368 6.40300 6.48347 6.52328 6.54796 6.62703 6.74053 6.98753 7.48158 7.56316 7.56563 7.64207 7.76312 8.21499 8.31699 9.13926 9.74348 10.40589 11.31685 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.002205 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.971264 B =12697.229146 C =13890.457315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.108 3.892 16 N -0.714 5.714 17 C 0.548 3.452 18 O -0.530 6.530 19 C -0.101 4.101 20 C -0.089 4.089 21 C -0.098 4.098 22 C -0.114 4.114 23 C 0.138 3.862 24 N -0.329 5.329 25 C 0.259 3.741 26 N -0.538 5.538 27 C 0.205 3.795 28 N -0.307 5.307 29 C -0.055 4.055 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.395 0.605 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.136 0.864 43 H 0.223 0.777 44 H 0.224 0.776 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.862 -23.612 -5.186 26.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.333 3.667 18 O -0.407 6.407 19 C -0.105 4.105 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.135 4.135 23 C 0.045 3.955 24 N -0.113 5.113 25 C -0.036 4.036 26 N -0.264 5.264 27 C -0.097 4.097 28 N -0.132 5.132 29 C -0.075 4.075 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.230 0.770 40 H 0.155 0.845 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.239 0.761 44 H 0.240 0.760 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.752 -22.164 -6.036 24.956 hybrid contribution 0.423 0.408 0.311 0.665 sum 10.175 -21.756 -5.725 24.691 Atomic orbital electron populations 1.69945 1.05019 1.25247 1.55917 1.24909 0.95699 0.97910 1.01351 0.86066 0.78955 0.83610 0.77276 1.20341 1.21560 1.21686 1.19037 0.90450 0.82140 1.44617 0.90536 1.44499 1.05876 1.00774 1.80103 1.21480 0.84648 0.90309 0.98957 1.23025 0.97451 0.99581 0.98642 1.22657 0.97131 0.96966 0.99864 1.21138 0.94443 0.88164 0.91953 0.94396 1.22339 0.96803 0.83048 0.99527 1.46065 1.54028 1.18870 1.17548 1.18126 0.79267 0.86536 0.82749 1.90822 1.60407 1.45222 1.44287 1.20031 1.00412 0.95280 0.94815 1.21506 0.97866 0.92731 0.98708 1.20933 0.96844 0.97471 0.96442 1.20967 1.01182 0.98272 0.93073 1.17419 0.97889 0.96297 0.83865 1.47754 1.40319 1.09315 1.13902 1.26198 0.92233 0.92398 0.92805 1.70637 1.25933 1.18548 1.11260 1.26228 0.95438 0.88532 0.99527 1.78278 1.22607 1.14620 0.97685 1.21044 0.93576 0.95553 0.97374 0.93615 0.90732 0.95643 0.92270 0.92275 0.91763 0.92380 0.91698 0.90804 0.77044 0.84504 0.83900 0.84620 0.76069 0.75967 0.82978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.54 55.49 0.58 -25.81 16 2 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.33 9.73 -15.06 -0.15 -6.48 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.59 -14.26 3.13 -162.57 -0.51 -14.77 16 10 C 0.17 3.97 5.42 -2.53 -0.01 3.96 16 11 C -0.15 -2.60 7.10 -24.52 -0.17 -2.77 16 12 C -0.13 -1.99 6.07 -24.83 -0.15 -2.14 16 13 C 0.15 2.86 3.22 -66.95 -0.22 2.65 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.01 5.09 -4.04 -0.02 1.99 16 16 N -0.71 -10.20 5.35 -61.24 -0.33 -10.53 16 17 C 0.55 8.53 7.77 -12.32 -0.10 8.43 16 18 O -0.53 -10.71 16.34 5.32 0.09 -10.62 16 19 C -0.10 -1.19 5.87 -104.99 -0.62 -1.81 16 20 C -0.09 -0.70 9.54 -39.16 -0.37 -1.07 16 21 C -0.10 -0.56 10.02 -39.67 -0.40 -0.95 16 22 C -0.11 -0.70 9.47 -39.32 -0.37 -1.08 16 23 C 0.14 1.34 6.68 -83.64 -0.56 0.78 16 24 N -0.33 -3.36 3.82 -11.84 -0.05 -3.41 16 25 C 0.26 2.02 11.97 -90.38 -1.08 0.94 16 26 N -0.54 -5.24 11.19 -15.75 -0.18 -5.41 16 27 C 0.21 1.98 13.03 -91.77 -1.20 0.79 16 28 N -0.31 -3.69 12.06 29.30 0.35 -3.34 16 29 C -0.05 -0.67 9.23 -38.99 -0.36 -1.03 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.07 1.94 6.86 -51.93 -0.36 1.58 16 32 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.34 8.03 -51.93 -0.42 0.92 16 38 H 0.07 1.60 7.86 -51.93 -0.41 1.19 16 39 H 0.39 4.20 6.28 -40.82 -0.26 3.94 16 40 H 0.14 0.77 6.40 -52.49 -0.34 0.43 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.14 0.36 6.81 -52.48 -0.36 0.00 16 43 H 0.22 0.61 7.12 -52.49 -0.37 0.24 16 44 H 0.22 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.15 2.23 7.34 -52.48 -0.39 1.84 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -35.72 376.38 -11.05 -46.77 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.80 Total: 2.34 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -5.87 Total: 2.07 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.12 Total: -63.26 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.72 -11.05 -46.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028128455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.913 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds