Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 119.99904 * 2 1 4 4 H 1.48503 * 109.47015 * 269.99834 * 3 2 1 5 5 H 1.48497 * 109.47377 * 30.00087 * 3 2 1 6 6 H 1.48502 * 109.47398 * 149.99929 * 3 2 1 7 7 C 1.38811 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00626 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99530 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27171 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29381 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21616 * 120.00590 * 359.97438 * 17 16 15 19 19 C 1.47296 * 119.99764 * 179.97438 * 17 16 15 20 20 C 1.37959 * 126.80735 * 359.68190 * 19 17 16 21 21 N 1.34163 * 107.88525 * 179.83536 * 20 19 17 22 22 H 0.96998 * 125.16054 * 180.12795 * 21 20 19 23 23 N 1.39764 * 109.67329 * 0.44198 * 21 20 19 24 24 C 1.31364 * 109.08133 * 359.72658 * 23 21 20 25 25 C 1.48302 * 126.51512 * 179.97438 * 24 23 21 26 26 C 1.39815 * 120.53684 * 325.01909 * 25 24 23 27 27 C 1.38398 * 118.30428 * 179.97438 * 26 25 24 28 28 C 1.38319 * 119.29180 * 0.02562 * 27 26 25 29 29 N 1.31892 * 121.03794 * 359.97438 * 28 27 26 30 30 C 1.31742 * 121.85458 * 359.72988 * 29 28 27 31 31 H 0.97000 * 120.00236 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 33 33 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 34 34 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 35 35 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 36 36 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 37 37 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 38 38 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 39 39 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 40 40 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 41 41 H 1.07997 * 126.05682 * 359.97392 * 20 19 17 42 42 H 1.08000 * 120.84319 * 0.02562 * 26 25 24 43 43 H 1.08000 * 120.35273 * 179.97438 * 27 26 25 44 44 H 1.07998 * 119.47997 * 179.97438 * 28 27 26 45 45 H 1.07996 * 119.70483 * 180.26455 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1117 -2.5501 0.2866 11 6 -0.2602 -4.0146 0.7691 12 6 0.7666 -4.7457 -0.1375 13 6 1.9023 -3.7106 -0.2808 14 1 2.6956 -3.9294 0.4339 15 6 2.4584 -3.7423 -1.7058 16 7 3.1253 -5.0253 -1.9414 17 6 3.7751 -5.2439 -3.1017 18 8 3.8075 -4.3764 -3.9534 19 6 4.4461 -6.5336 -3.3383 20 6 4.5033 -7.6066 -2.4730 21 7 5.2041 -8.5816 -3.0714 22 1 5.3953 -9.4503 -2.6845 23 7 5.6229 -8.1531 -4.3341 24 6 5.1909 -6.9293 -4.5374 25 6 5.4146 -6.1044 -5.7493 26 6 6.6158 -6.1957 -6.4590 27 6 6.7752 -5.4051 -7.5837 28 6 5.7511 -4.5575 -7.9658 29 7 4.6288 -4.4928 -7.2761 30 6 4.4290 -5.2299 -6.2025 31 1 -0.4850 0.8400 -0.0004 32 1 -0.4234 -1.8591 1.0698 33 1 -0.6984 -2.3872 -0.6175 34 1 0.0113 -4.1089 1.8206 35 1 -1.2709 -4.3832 0.5936 36 1 0.3276 -4.9734 -1.1088 37 1 1.1305 -5.6530 0.3446 38 1 1.6416 -3.6213 -2.4174 39 1 3.1752 -2.9312 -1.8342 40 1 3.0992 -5.7173 -1.2622 41 1 4.0604 -7.6541 -1.4891 42 1 7.3988 -6.8668 -6.1382 43 1 7.6898 -5.4489 -8.1564 44 1 5.8725 -3.9389 -8.8427 45 1 3.4948 -5.1522 -5.6663 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028206415.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 102.389161 kcal Electronic energy + Delta-G solvation = -28928.136116 eV Core-core repulsion = 24947.956450 eV Total energy + Delta-G solvation = -3980.179666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.46079 -39.82432 -39.06060 -37.55092 -34.35490 -33.50933 -32.49219 -31.99007 -30.92802 -30.21084 -29.51940 -28.41168 -25.01806 -24.32808 -24.08973 -23.58265 -22.57149 -20.61360 -20.32399 -19.87602 -19.57295 -18.60478 -17.12153 -16.87517 -16.29508 -16.14641 -15.75609 -15.66624 -15.19624 -14.80796 -14.49488 -14.32063 -14.04937 -13.81948 -13.74972 -13.57923 -13.13819 -12.92673 -12.85105 -12.10621 -11.95981 -11.88531 -11.75820 -11.37818 -11.26001 -10.93336 -10.78649 -10.59759 -10.22681 -10.11044 -9.94149 -9.86867 -9.78679 -9.71095 -9.59629 -9.44208 -9.15607 -8.69204 -8.61221 -8.51627 -6.84393 -5.75977 -3.12609 0.72681 1.27449 1.29395 2.11312 2.34409 3.40477 3.45095 3.48394 3.48963 3.51453 3.86343 4.01592 4.30084 4.50100 4.60471 4.74905 4.85349 4.92945 5.02581 5.17427 5.21411 5.33314 5.38425 5.44316 5.50004 5.62058 5.79103 5.81376 5.88426 6.03737 6.08796 6.13863 6.17634 6.21351 6.44650 6.54321 6.60554 6.66848 6.73850 6.75201 6.81913 7.05377 7.15033 7.51743 7.60569 7.79716 7.81018 8.04052 8.25923 8.51979 9.18005 9.78637 10.44936 11.35739 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.002973 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.581688 B = 9414.728061 C =11120.630406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.718 5.718 17 C 0.583 3.417 18 O -0.535 6.535 19 C -0.273 4.273 20 C 0.107 3.893 21 N -0.464 5.464 22 H 0.444 0.556 23 N -0.284 5.284 24 C 0.176 3.824 25 C -0.084 4.084 26 C -0.046 4.046 27 C -0.190 4.190 28 C 0.109 3.891 29 N -0.487 5.487 30 C 0.170 3.830 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.391 0.609 41 H 0.190 0.810 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.155 0.845 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.773 -19.986 -6.228 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.015 4.015 16 N -0.368 5.368 17 C 0.369 3.631 18 O -0.413 6.413 19 C -0.288 4.288 20 C -0.043 4.043 21 N -0.170 5.170 22 H 0.289 0.711 23 N -0.105 5.105 24 C 0.006 3.994 25 C -0.089 4.089 26 C -0.073 4.073 27 C -0.210 4.210 28 C -0.048 4.048 29 N -0.195 5.195 30 C 0.012 3.988 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.224 0.776 41 H 0.207 0.793 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.172 0.828 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 9.692 -19.479 -7.532 23.024 hybrid contribution 0.886 0.106 1.281 1.561 sum 10.578 -19.373 -6.251 22.941 Atomic orbital electron populations 1.69929 1.05014 1.25313 1.55912 1.24888 0.95666 0.97849 1.01364 0.86158 0.78684 0.83369 0.77787 1.21311 1.21668 1.20606 1.18981 0.90401 0.82167 1.44671 0.90630 1.44484 1.05843 1.00768 1.80189 1.21469 0.84704 0.90249 0.98919 1.23025 0.97446 0.99659 0.98607 1.22646 0.97134 0.96912 0.99823 1.21128 0.94335 0.88055 0.92143 0.94573 1.22263 0.96760 0.83204 0.99229 1.45974 1.54596 1.18661 1.17568 1.17174 0.78116 0.85419 0.82361 1.90770 1.61416 1.45397 1.43711 1.21474 1.13504 0.97466 0.96344 1.23059 0.94325 0.88306 0.98601 1.45915 1.42490 1.15496 1.13053 0.71146 1.77317 1.22974 1.12796 0.97404 1.21576 0.94285 0.90649 0.92854 1.18699 0.96777 0.99411 0.93975 1.21582 0.95930 0.96482 0.93318 1.21993 1.01137 0.99311 0.98561 1.22949 0.88788 0.95176 0.97919 1.67874 1.22955 1.21652 1.07020 1.23513 0.99238 0.86616 0.89441 0.93599 0.90813 0.95639 0.92362 0.92333 0.91722 0.92525 0.91765 0.90942 0.77612 0.79284 0.84830 0.84704 0.82793 0.80632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.54 55.49 0.58 -25.89 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.35 9.73 -15.06 -0.15 -6.49 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.59 -14.28 3.13 -162.57 -0.51 -14.79 16 10 C 0.17 3.99 5.42 -2.53 -0.01 3.98 16 11 C -0.15 -2.60 7.10 -24.52 -0.17 -2.78 16 12 C -0.13 -1.96 6.07 -24.83 -0.15 -2.11 16 13 C 0.15 2.85 3.22 -66.95 -0.22 2.64 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C 0.11 2.04 5.09 -4.04 -0.02 2.02 16 16 N -0.72 -9.97 5.39 -61.43 -0.33 -10.31 16 17 C 0.58 8.87 7.68 -12.58 -0.10 8.77 16 18 O -0.53 -10.19 12.47 5.26 0.07 -10.12 16 19 C -0.27 -3.33 6.27 -102.95 -0.65 -3.98 16 20 C 0.11 0.82 11.50 -16.64 -0.19 0.63 16 21 N -0.46 -3.43 7.20 30.81 0.22 -3.20 16 22 H 0.44 1.53 8.96 -182.85 -1.64 -0.11 16 23 N -0.28 -3.20 12.64 34.58 0.44 -2.77 16 24 C 0.18 2.29 6.96 -80.56 -0.56 1.73 16 25 C -0.08 -1.17 5.74 -104.76 -0.60 -1.77 16 26 C -0.05 -0.53 9.92 -38.93 -0.39 -0.92 16 27 C -0.19 -1.94 10.10 -39.49 -0.40 -2.34 16 28 C 0.11 1.29 11.17 -17.50 -0.20 1.09 16 29 N -0.49 -7.48 10.35 -12.96 -0.13 -7.62 16 30 C 0.17 2.65 8.96 -17.18 -0.15 2.49 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 32 H 0.07 1.93 6.86 -51.93 -0.36 1.57 16 33 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.99 7.78 -51.93 -0.40 0.58 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.31 8.03 -51.93 -0.42 0.90 16 39 H 0.07 1.57 7.86 -51.93 -0.41 1.16 16 40 H 0.39 3.98 7.20 -40.82 -0.29 3.68 16 41 H 0.19 0.63 7.48 -52.49 -0.39 0.24 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.15 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.18 2.95 5.68 -52.49 -0.30 2.65 16 LS Contribution 373.84 15.07 5.63 5.63 Total: -1.00 -35.28 373.84 -10.24 -45.51 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -7.13 Total: 3.58 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -4.05 Total: 2.85 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: 0.27 Total: -64.57 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.28 -10.24 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028206415.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.901 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds