Wall clock time and date at job start Sat Apr 11 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48497 * 109.46811 * 239.99839 * 3 2 1 5 5 H 1.48497 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47004 * 119.99865 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21550 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.47862 * 119.99653 * 179.97438 * 17 16 15 20 20 C 1.39618 * 120.11565 * 359.97438 * 19 17 16 21 21 C 1.37970 * 119.98659 * 179.97438 * 20 19 17 22 22 C 1.38269 * 120.21466 * 0.02562 * 21 20 19 23 23 C 1.38908 * 120.22872 * 359.97438 * 22 21 20 24 24 N 1.40273 * 119.99093 * 179.97438 * 23 22 21 25 25 C 1.36112 * 125.94212 * 4.71313 * 24 23 22 26 26 C 1.35373 * 106.04760 * 179.84701 * 25 24 23 27 27 N 1.33772 * 106.53684 * 0.41194 * 26 25 24 28 28 N 1.28608 * 109.06322 * 359.73055 * 27 26 25 29 29 C 1.38576 * 120.01099 * 359.74295 * 23 22 21 30 30 H 0.97000 * 119.99954 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08998 * 110.62393 * 277.01038 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.97005 * 119.99924 * 4.65894 * 16 15 13 40 40 H 1.08003 * 120.00698 * 0.02562 * 20 19 17 41 41 H 1.08001 * 119.89377 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.88280 * 179.97438 * 22 21 20 43 43 H 1.07999 * 126.97483 * 0.02562 * 25 24 23 44 44 H 1.07999 * 126.72906 * 180.14239 * 26 25 24 45 45 H 1.07998 * 120.10969 * 180.27604 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4483 -6.5359 -3.3450 20 6 4.4131 -7.5341 -2.3696 21 6 5.0420 -8.7413 -2.5953 22 6 5.7087 -8.9667 -3.7855 23 6 5.7493 -7.9798 -4.7621 24 7 6.4276 -8.2136 -5.9675 25 6 7.0071 -9.3864 -6.3436 26 6 7.5388 -9.1650 -7.5687 27 7 7.2730 -7.8901 -7.8744 28 7 6.6149 -7.3548 -6.9079 29 6 5.1160 -6.7660 -4.5477 30 1 -0.4850 0.8401 -0.0004 31 1 -0.4235 -1.8601 1.0682 32 1 -0.6985 -2.3866 -0.6197 33 1 0.0111 -4.1106 1.8169 34 1 -1.2711 -4.3837 0.5897 35 1 0.3273 -4.9724 -1.1133 36 1 1.1302 -5.6534 0.3396 37 1 1.6415 -3.6192 -2.4206 38 1 3.1751 -2.9297 -1.8368 39 1 3.0990 -5.7164 -1.2672 40 1 3.8930 -7.3618 -1.4389 41 1 5.0142 -9.5123 -1.8395 42 1 6.1995 -9.9135 -3.9563 43 1 7.0345 -10.3074 -5.7803 44 1 8.0764 -9.8768 -8.1777 45 1 5.1428 -5.9992 -5.3077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028350185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:45 Heat of formation + Delta-G solvation = 128.061312 kcal Electronic energy + Delta-G solvation = -28289.009081 eV Core-core repulsion = 24309.942643 eV Total energy + Delta-G solvation = -3979.066438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.79475 -40.45092 -38.84044 -37.62051 -35.10039 -34.37926 -32.53879 -32.15933 -31.22569 -30.54724 -29.62747 -28.63770 -25.38787 -24.80631 -24.53660 -23.60569 -22.48685 -21.73687 -20.64356 -20.19212 -19.74554 -18.97490 -17.18969 -16.90762 -16.85798 -16.52861 -16.21888 -15.48229 -15.34092 -15.05961 -14.73143 -14.65081 -14.32103 -14.25439 -13.91229 -13.53737 -13.42367 -12.97782 -12.55382 -12.33921 -12.15460 -11.92719 -11.85600 -11.78921 -11.44403 -11.37590 -11.35411 -10.98269 -10.79730 -10.28821 -10.17896 -10.05431 -9.91857 -9.87270 -9.82388 -9.71379 -9.60505 -9.15000 -8.80647 -8.60821 -6.89060 -5.79631 -3.16724 0.03631 0.48411 1.48367 1.80098 2.17705 2.65805 3.17034 3.39942 3.44630 3.45830 3.48079 3.88470 4.06908 4.22416 4.44851 4.48234 4.51336 4.54735 4.68021 4.78553 4.90210 5.10220 5.27212 5.32324 5.33762 5.42666 5.56914 5.59669 5.67202 5.73931 5.74614 5.78351 5.95624 5.99895 6.08027 6.16445 6.37650 6.39627 6.47478 6.51904 6.61605 6.73098 6.97806 7.47699 7.55773 7.61253 7.75924 8.06859 8.21493 8.28533 9.13963 9.74442 10.40610 11.31888 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.002208 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.891642 B =12676.067901 C =13856.982267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 0.911 3.089 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.713 5.713 17 C 0.548 3.452 18 O -0.527 6.527 19 C -0.103 4.103 20 C -0.078 4.078 21 C -0.103 4.103 22 C -0.098 4.098 23 C 0.111 3.889 24 N -0.241 5.241 25 C -0.051 4.051 26 C -0.044 4.044 27 N -0.263 5.263 28 N -0.072 5.072 29 C -0.044 4.044 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.395 0.605 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.194 0.806 44 H 0.196 0.804 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.793 -25.705 -3.770 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.017 4.017 16 N -0.365 5.365 17 C 0.333 3.667 18 O -0.405 6.405 19 C -0.107 4.107 20 C -0.097 4.097 21 C -0.122 4.122 22 C -0.119 4.119 23 C 0.020 3.980 24 N -0.029 5.029 25 C -0.199 4.199 26 C -0.200 4.200 27 N -0.129 5.129 28 N -0.050 5.050 29 C -0.065 4.065 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.229 0.771 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.211 0.789 44 H 0.213 0.787 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.500 -23.322 -4.886 25.652 hybrid contribution 0.654 -0.682 0.611 1.126 sum 10.154 -24.004 -4.275 26.412 Atomic orbital electron populations 1.69923 1.05020 1.25497 1.55693 1.24906 0.95695 0.97906 1.01269 0.86218 0.78610 0.82990 0.78083 1.20867 1.21529 1.21055 1.18940 0.90391 0.82158 1.44960 0.90643 1.44481 1.05867 1.00751 1.80103 1.21481 0.84643 0.90296 0.98961 1.23025 0.97446 0.99595 0.98637 1.22658 0.97145 0.96958 0.99867 1.21138 0.94436 0.88191 0.91930 0.94408 1.22359 0.96831 0.82983 0.99572 1.46066 1.54003 1.18917 1.17483 1.18081 0.79350 0.86449 0.82840 1.90836 1.60290 1.45108 1.44224 1.20039 1.00538 0.95485 0.94665 1.21587 0.96962 0.92519 0.98634 1.20979 0.97048 0.97603 0.96520 1.21051 0.99927 0.98170 0.92783 1.17504 0.99579 0.96866 0.84078 1.44785 1.35522 1.08944 1.13623 1.23841 1.03716 0.92841 0.99519 1.23696 1.05183 0.95296 0.95833 1.75175 1.11535 1.07790 1.18405 1.78507 1.16047 1.16792 0.93678 1.21091 0.92716 0.95211 0.97500 0.93500 0.90731 0.95639 0.92274 0.92276 0.91758 0.92397 0.91645 0.90745 0.77061 0.84238 0.83695 0.84354 0.78857 0.78739 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.34 10.54 55.49 0.58 -25.76 16 2 C 0.00 -0.01 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.37 9.73 -15.06 -0.15 -6.52 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.18 3.13 -162.57 -0.51 -14.69 16 10 C 0.17 3.96 5.42 -2.53 -0.01 3.94 16 11 C -0.15 -2.58 7.10 -24.52 -0.17 -2.75 16 12 C -0.13 -1.97 6.07 -24.83 -0.15 -2.12 16 13 C 0.15 2.84 3.22 -66.95 -0.22 2.62 16 14 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 15 C 0.11 1.98 5.09 -4.04 -0.02 1.96 16 16 N -0.71 -9.96 5.35 -61.24 -0.33 -10.29 16 17 C 0.55 8.34 7.77 -12.32 -0.10 8.24 16 18 O -0.53 -10.52 16.34 5.32 0.09 -10.43 16 19 C -0.10 -1.17 5.87 -104.99 -0.62 -1.79 16 20 C -0.08 -0.57 9.54 -39.16 -0.37 -0.94 16 21 C -0.10 -0.54 10.02 -39.67 -0.40 -0.94 16 22 C -0.10 -0.59 9.45 -39.32 -0.37 -0.96 16 23 C 0.11 1.07 6.66 -83.62 -0.56 0.51 16 24 N -0.24 -2.54 3.56 -10.50 -0.04 -2.58 16 25 C -0.05 -0.36 10.91 -16.67 -0.18 -0.55 16 26 C -0.04 -0.37 12.05 -17.73 -0.21 -0.58 16 27 N -0.26 -3.36 12.39 30.24 0.37 -2.99 16 28 N -0.07 -0.98 12.42 60.35 0.75 -0.23 16 29 C -0.04 -0.53 9.16 -39.00 -0.36 -0.89 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.93 6.86 -51.93 -0.36 1.58 16 32 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 38 H 0.07 1.60 7.86 -51.93 -0.41 1.19 16 39 H 0.39 4.04 6.28 -40.82 -0.26 3.78 16 40 H 0.14 0.70 6.40 -52.48 -0.34 0.37 16 41 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.14 0.38 6.77 -52.49 -0.36 0.02 16 43 H 0.19 0.45 7.12 -52.49 -0.37 0.07 16 44 H 0.20 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.16 2.22 7.29 -52.49 -0.38 1.84 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -35.53 375.46 -8.22 -43.75 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.79 Total: 1.43 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.98 Total: -0.87 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.84 Total: -56.54 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.53 -8.22 -43.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028350185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.810 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds