Wall clock time and date at job start Sat Apr 11 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00185 * 2 1 4 4 H 1.48497 * 109.46811 * 239.99839 * 3 2 1 5 5 H 1.48497 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47004 * 119.99865 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21550 * 120.00332 * 359.97438 * 17 16 15 19 19 C 1.47862 * 119.99653 * 179.97438 * 17 16 15 20 20 C 1.39618 * 120.11565 * 359.97438 * 19 17 16 21 21 C 1.37970 * 119.98659 * 179.97438 * 20 19 17 22 22 C 1.38269 * 120.21466 * 0.02562 * 21 20 19 23 23 C 1.38908 * 120.22872 * 359.97438 * 22 21 20 24 24 N 1.40273 * 119.99093 * 179.97438 * 23 22 21 25 25 C 1.36112 * 125.94212 * 4.71313 * 24 23 22 26 26 C 1.35373 * 106.04760 * 179.84701 * 25 24 23 27 27 N 1.33772 * 106.53684 * 0.41194 * 26 25 24 28 28 N 1.28608 * 109.06322 * 359.73055 * 27 26 25 29 29 C 1.38576 * 120.01099 * 359.74295 * 23 22 21 30 30 H 0.97000 * 119.99954 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08998 * 110.62393 * 277.01038 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.97005 * 119.99924 * 4.65894 * 16 15 13 40 40 H 1.08003 * 120.00698 * 0.02562 * 20 19 17 41 41 H 1.08001 * 119.89377 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.88280 * 179.97438 * 22 21 20 43 43 H 1.07999 * 126.97483 * 0.02562 * 25 24 23 44 44 H 1.07999 * 126.72906 * 180.14239 * 26 25 24 45 45 H 1.07998 * 120.10969 * 180.27604 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4483 -6.5359 -3.3450 20 6 4.4131 -7.5341 -2.3696 21 6 5.0420 -8.7413 -2.5953 22 6 5.7087 -8.9667 -3.7855 23 6 5.7493 -7.9798 -4.7621 24 7 6.4276 -8.2136 -5.9675 25 6 7.0071 -9.3864 -6.3436 26 6 7.5388 -9.1650 -7.5687 27 7 7.2730 -7.8901 -7.8744 28 7 6.6149 -7.3548 -6.9079 29 6 5.1160 -6.7660 -4.5477 30 1 -0.4850 0.8401 -0.0004 31 1 -0.4235 -1.8601 1.0682 32 1 -0.6985 -2.3866 -0.6197 33 1 0.0111 -4.1106 1.8169 34 1 -1.2711 -4.3837 0.5897 35 1 0.3273 -4.9724 -1.1133 36 1 1.1302 -5.6534 0.3396 37 1 1.6415 -3.6192 -2.4206 38 1 3.1751 -2.9297 -1.8368 39 1 3.0990 -5.7164 -1.2672 40 1 3.8930 -7.3618 -1.4389 41 1 5.0142 -9.5123 -1.8395 42 1 6.1995 -9.9135 -3.9563 43 1 7.0345 -10.3074 -5.7803 44 1 8.0764 -9.8768 -8.1777 45 1 5.1428 -5.9992 -5.3077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028350185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:44 Heat of formation + Delta-G solvation = 102.150741 kcal Electronic energy + Delta-G solvation = -28290.132648 eV Core-core repulsion = 24309.942643 eV Total energy + Delta-G solvation = -3980.190005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.48357 -41.43107 -39.88793 -39.13138 -36.05089 -35.60733 -34.42172 -32.85753 -31.96630 -31.48854 -31.15339 -30.09632 -26.84985 -26.14641 -25.46002 -24.71421 -23.35952 -22.40151 -22.05411 -21.45693 -21.16478 -19.98864 -18.73663 -17.89528 -17.61278 -17.55101 -17.25046 -16.82393 -16.42047 -16.14814 -16.10293 -15.69169 -15.58148 -15.22168 -14.85596 -14.76584 -14.64996 -14.09886 -13.93298 -13.65504 -13.41907 -13.11821 -13.04927 -12.95068 -12.88644 -12.68274 -12.49350 -12.13698 -12.07961 -12.05100 -11.88029 -11.70070 -11.47167 -11.38741 -11.19529 -10.69765 -10.51825 -10.37104 -10.09697 -9.78333 -8.87736 -7.90310 -5.27460 -0.57849 -0.24563 0.87884 1.19676 1.41683 1.45433 1.50593 1.51497 1.72823 2.00065 2.47243 2.65447 3.28440 3.31826 3.45856 3.63507 3.71839 3.79215 3.91118 3.96104 3.98095 4.02787 4.18913 4.22559 4.25943 4.30155 4.42347 4.55605 4.59505 4.72361 4.74713 4.94562 5.00710 5.03222 5.08571 5.14037 5.16171 5.20332 5.23820 5.30700 5.44375 5.46453 5.55212 5.67562 5.77911 5.79109 6.22047 6.47446 7.07654 7.13597 7.35884 7.75252 8.39804 9.19833 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017399 B = 0.002208 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.891642 B =12676.067901 C =13856.982267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.060 4.060 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.075 0.925 9 N -0.611 5.611 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.114 4.114 13 C 0.148 3.852 14 H 0.056 0.944 15 C 0.127 3.873 16 N -0.693 5.693 17 C 0.545 3.455 18 O -0.592 6.592 19 C -0.125 4.125 20 C -0.064 4.064 21 C -0.083 4.083 22 C -0.073 4.073 23 C 0.093 3.907 24 N -0.246 5.246 25 C -0.028 4.028 26 C -0.055 4.055 27 N -0.305 5.305 28 N -0.138 5.138 29 C -0.073 4.073 30 H 0.248 0.752 31 H 0.037 0.963 32 H -0.011 1.011 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.418 0.582 40 H 0.170 0.830 41 H 0.198 0.802 42 H 0.187 0.813 43 H 0.252 0.748 44 H 0.231 0.769 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.254 -31.935 -1.171 33.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.254 4.254 3 Si 0.798 3.202 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.335 5.335 10 C 0.046 3.954 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.074 0.926 15 C 0.000 4.000 16 N -0.346 5.346 17 C 0.333 3.667 18 O -0.473 6.473 19 C -0.129 4.129 20 C -0.083 4.083 21 C -0.101 4.101 22 C -0.093 4.093 23 C 0.002 3.998 24 N -0.034 5.034 25 C -0.176 4.176 26 C -0.211 4.211 27 N -0.170 5.170 28 N -0.116 5.116 29 C -0.094 4.094 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.007 0.993 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.132 0.868 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.258 0.742 40 H 0.187 0.813 41 H 0.215 0.785 42 H 0.204 0.796 43 H 0.268 0.732 44 H 0.248 0.752 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.976 -29.597 -2.256 31.648 hybrid contribution 0.285 1.068 -0.213 1.126 sum 11.262 -28.529 -2.469 30.770 Atomic orbital electron populations 1.70127 1.06167 1.25425 1.57506 1.25651 0.96527 1.00922 1.02254 0.85296 0.77381 0.79442 0.78121 1.21235 1.21847 1.19757 1.19247 0.90698 0.83730 1.43258 0.90695 1.44750 1.06397 1.01949 1.80425 1.21309 0.83874 0.93907 0.96340 1.22885 0.99653 0.94997 0.99559 1.22673 0.94841 0.97472 1.00168 1.21381 0.96235 0.86794 0.91516 0.92605 1.21782 0.95030 0.84079 0.99068 1.45662 1.53190 1.17760 1.17978 1.18805 0.78509 0.87490 0.81919 1.90802 1.62550 1.47669 1.46282 1.19636 1.02437 0.94628 0.96205 1.21957 0.96280 0.91979 0.98104 1.21591 0.94356 0.97309 0.96863 1.21671 0.98045 0.98356 0.91243 1.17775 1.00047 0.97028 0.84942 1.44991 1.35407 1.09657 1.13367 1.24777 1.00736 0.93055 0.99074 1.24469 1.05321 0.94288 0.97057 1.75095 1.12414 1.10345 1.19186 1.78504 1.18893 1.18861 0.95323 1.20850 0.95206 0.96029 0.97310 0.94306 0.94452 0.99291 0.90907 0.89860 0.91557 0.86809 0.94549 0.94899 0.74236 0.81269 0.78488 0.79615 0.73210 0.75221 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 10.54 21.65 0.23 -57.01 16 2 C -0.06 -3.45 5.47 84.86 0.46 -2.98 16 3 Si 0.97 47.10 29.55 68.60 2.03 49.12 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.24 -13.43 9.73 84.03 0.82 -12.61 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.61 -30.22 3.13 -668.26 -2.09 -32.31 16 10 C 0.17 8.14 5.42 86.86 0.47 8.61 16 11 C -0.13 -4.28 7.10 32.03 0.23 -4.06 16 12 C -0.11 -3.09 6.07 31.82 0.19 -2.90 16 13 C 0.15 5.39 3.22 45.34 0.15 5.54 16 14 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.13 4.85 5.09 86.38 0.44 5.29 16 16 N -0.69 -18.93 5.35 -465.96 -2.50 -21.43 16 17 C 0.54 17.34 7.77 86.79 0.67 18.02 16 18 O -0.59 -26.13 16.34 -3.87 -0.06 -26.20 16 19 C -0.13 -2.78 5.87 -20.10 -0.12 -2.89 16 20 C -0.06 -0.64 9.54 22.54 0.21 -0.43 16 21 C -0.08 -0.29 10.02 22.21 0.22 -0.06 16 22 C -0.07 -0.44 9.45 22.44 0.21 -0.23 16 23 C 0.09 1.63 6.66 38.03 0.25 1.89 16 24 N -0.25 -4.98 3.56 -187.15 -0.67 -5.65 16 25 C -0.03 -0.30 10.91 83.37 0.91 0.61 16 26 C -0.05 -0.80 12.05 83.74 1.01 0.21 16 27 N -0.31 -8.14 12.39 -58.24 -0.72 -8.87 16 28 N -0.14 -4.07 12.42 37.02 0.46 -3.61 16 29 C -0.07 -1.84 9.16 22.65 0.21 -1.64 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.04 2.02 6.86 -2.39 -0.02 2.01 16 32 H -0.01 -0.59 8.08 -2.39 -0.02 -0.61 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.07 1.82 7.78 -2.39 -0.02 1.80 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.59 8.03 -2.39 -0.02 1.57 16 38 H 0.03 1.52 7.86 -2.39 -0.02 1.50 16 39 H 0.42 7.09 6.28 -92.70 -0.58 6.51 16 40 H 0.17 0.61 6.40 -2.91 -0.02 0.60 16 41 H 0.20 -1.15 8.06 -2.91 -0.02 -1.17 16 42 H 0.19 -0.62 6.77 -2.91 -0.02 -0.64 16 43 H 0.25 -0.66 7.12 -2.91 -0.02 -0.68 16 44 H 0.23 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.11 3.76 7.29 -2.91 -0.02 3.73 16 Total: -1.00 -93.54 375.46 3.47 -90.07 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 0.45 Total: 3.53 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.35 Total: 12.34 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -5.29 Total: -128.87 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.06 Total: -26.20 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.12 kcal Total: -93.54 3.47 -90.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028350185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.221 kcal (2) G-P(sol) polarization free energy of solvation -93.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds