Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99732 * 2 1 4 4 H 1.48497 * 109.47158 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46962 * 299.99792 * 3 2 1 6 6 H 1.48494 * 109.47105 * 59.99893 * 3 2 1 7 7 C 1.38810 * 120.00601 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00440 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64709 * 14.73267 * 9 7 2 11 11 C 1.54910 * 104.82983 * 155.89401 * 10 9 7 12 12 C 1.55158 * 101.58405 * 37.01270 * 11 10 9 13 13 C 1.47025 * 125.65183 * 194.76302 * 9 7 2 14 14 H 1.09003 * 110.00453 * 300.52603 * 13 9 7 15 15 C 1.53006 * 109.88235 * 61.61805 * 13 9 7 16 16 N 1.46498 * 109.46693 * 182.40330 * 15 13 9 17 17 C 1.34779 * 119.99271 * 185.13765 * 16 15 13 18 18 O 1.21546 * 120.00695 * 359.97438 * 17 16 15 19 19 C 1.47859 * 119.99443 * 180.02562 * 17 16 15 20 20 C 1.39616 * 120.11747 * 359.97438 * 19 17 16 21 21 C 1.37974 * 119.98860 * 180.02562 * 20 19 17 22 22 C 1.38269 * 120.21561 * 359.97438 * 21 20 19 23 23 C 1.38909 * 120.22714 * 0.02562 * 22 21 20 24 24 N 1.40266 * 119.99513 * 179.97438 * 23 22 21 25 25 C 1.36116 * 125.94122 * 5.24564 * 24 23 22 26 26 C 1.35366 * 106.05194 * 180.13473 * 25 24 23 27 27 N 1.33780 * 106.53618 * 359.63989 * 26 25 24 28 28 N 1.28605 * 109.05768 * 0.23046 * 27 26 25 29 29 C 1.38580 * 120.01081 * 0.25156 * 23 22 21 30 30 H 0.96991 * 120.00327 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36538 * 37.05777 * 10 9 7 32 32 H 1.08999 * 110.46303 * 274.78183 * 10 9 7 33 33 H 1.09003 * 111.00420 * 278.93414 * 11 10 9 34 34 H 1.08995 * 111.00524 * 155.08725 * 11 10 9 35 35 H 1.08998 * 110.72060 * 206.13847 * 12 11 10 36 36 H 1.08997 * 110.72212 * 82.85901 * 12 11 10 37 37 H 1.08997 * 109.46669 * 62.40318 * 15 13 9 38 38 H 1.09002 * 109.46833 * 302.40323 * 15 13 9 39 39 H 0.96993 * 120.00429 * 5.13143 * 16 15 13 40 40 H 1.07998 * 120.00653 * 0.02562 * 20 19 17 41 41 H 1.08000 * 119.89613 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.88555 * 179.97438 * 22 21 20 43 43 H 1.07997 * 126.97586 * 359.97438 * 25 24 23 44 44 H 1.08001 * 126.73442 * 179.91345 * 26 25 24 45 45 H 1.07996 * 120.10915 * 179.74966 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0016 10 6 -0.1074 -2.5531 -0.3024 11 6 -0.2463 -4.0227 -0.7722 12 6 0.7644 -4.7441 0.1581 13 6 1.8980 -3.7075 0.3067 14 1 2.7028 -3.9356 -0.3922 15 6 2.4334 -3.7238 1.7399 16 7 3.0523 -5.0227 2.0152 17 6 3.5030 -5.3054 3.2536 18 8 3.3963 -4.4826 4.1418 19 6 4.1282 -6.6162 3.5313 20 6 4.2526 -7.5629 2.5127 21 6 4.8360 -8.7854 2.7750 22 6 5.2994 -9.0773 4.0446 23 6 5.1803 -8.1419 5.0647 24 7 5.6516 -8.4433 6.3509 25 6 6.3318 -9.5664 6.7098 26 6 6.5848 -9.4437 8.0339 27 7 6.0651 -8.2710 8.4138 28 7 5.5205 -7.7036 7.3962 29 6 4.5907 -6.9133 4.8131 30 1 -0.4850 0.8399 -0.0004 31 1 -0.4075 -1.8706 -1.0975 32 1 -0.7085 -2.3818 0.5905 33 1 0.0419 -4.1274 -1.8182 34 1 -1.2591 -4.3909 -0.6090 35 1 1.1350 -5.6565 -0.3089 36 1 0.3112 -4.9612 1.1253 37 1 1.6116 -3.5579 2.4365 38 1 3.1759 -2.9348 1.8593 39 1 3.1378 -5.6792 1.3064 40 1 3.8921 -7.3384 1.5197 41 1 4.9318 -9.5166 1.9859 42 1 5.7548 -10.0360 4.2440 43 1 6.6105 -10.3897 6.0688 44 1 7.1079 -10.1514 8.6599 45 1 4.4936 -6.1865 5.6060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028350187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 127.706211 kcal Electronic energy + Delta-G solvation = -28300.767300 eV Core-core repulsion = 24321.685464 eV Total energy + Delta-G solvation = -3979.081836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.79599 -40.45241 -38.84368 -37.62040 -35.10156 -34.38077 -32.54359 -32.15997 -31.22677 -30.54761 -29.63107 -28.63715 -25.38943 -24.80712 -24.54088 -23.60736 -22.48645 -21.73777 -20.63060 -20.20131 -19.76704 -18.96459 -17.19326 -16.90622 -16.86283 -16.50047 -16.21301 -15.48717 -15.33992 -15.08122 -14.74163 -14.64936 -14.32483 -14.25604 -13.91241 -13.54359 -13.43523 -12.98478 -12.56410 -12.34157 -12.13961 -11.94770 -11.82115 -11.79101 -11.43654 -11.37552 -11.33219 -10.97573 -10.83344 -10.31743 -10.15562 -10.03593 -9.91736 -9.87386 -9.84025 -9.73096 -9.60562 -9.14984 -8.78067 -8.62512 -6.88826 -5.80882 -3.17955 0.03561 0.48333 1.48321 1.80038 2.17600 2.65722 3.16973 3.37917 3.44623 3.46160 3.48005 3.88441 4.06888 4.22353 4.44125 4.48072 4.51290 4.54573 4.67989 4.78507 4.90144 5.10144 5.27156 5.32501 5.34147 5.43335 5.56634 5.59654 5.67205 5.73912 5.74711 5.78348 5.96868 6.00040 6.07985 6.17380 6.37615 6.39456 6.47804 6.51828 6.61899 6.73348 6.97926 7.46892 7.56473 7.61218 7.75522 8.06775 8.20570 8.28443 9.13158 9.73661 10.40331 11.31118 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.002186 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.768380 B =12807.683849 C =13819.018803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.107 3.893 16 N -0.713 5.713 17 C 0.548 3.452 18 O -0.528 6.528 19 C -0.103 4.103 20 C -0.078 4.078 21 C -0.103 4.103 22 C -0.098 4.098 23 C 0.111 3.889 24 N -0.241 5.241 25 C -0.051 4.051 26 C -0.045 4.045 27 N -0.263 5.263 28 N -0.072 5.072 29 C -0.044 4.044 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.395 0.605 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.194 0.806 44 H 0.196 0.804 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.322 -25.475 3.882 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.364 5.364 17 C 0.333 3.667 18 O -0.405 6.405 19 C -0.107 4.107 20 C -0.097 4.097 21 C -0.122 4.122 22 C -0.119 4.119 23 C 0.020 3.980 24 N -0.029 5.029 25 C -0.199 4.199 26 C -0.200 4.200 27 N -0.129 5.129 28 N -0.050 5.050 29 C -0.065 4.065 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.229 0.771 40 H 0.158 0.842 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.211 0.789 44 H 0.213 0.787 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.621 -23.260 5.120 25.687 hybrid contribution 0.952 -0.546 -0.700 1.302 sum 10.573 -23.806 4.419 26.421 Atomic orbital electron populations 1.69939 1.05040 1.25304 1.55718 1.24930 0.95690 0.97936 1.01249 0.86074 0.78943 0.83626 0.77292 1.20345 1.21679 1.21542 1.19022 0.90424 0.82121 1.44816 0.90558 1.44491 1.06428 1.01011 1.79263 1.21461 0.84769 0.90151 0.98924 1.23006 0.97574 0.99626 0.98522 1.22619 0.97175 0.96924 0.99787 1.21138 0.94540 0.88259 0.91744 0.94465 1.22356 0.97692 0.82202 0.99489 1.46059 1.60603 1.19420 1.10362 1.18075 0.79101 0.86185 0.83346 1.90834 1.56187 1.48617 1.44847 1.20039 1.01489 0.95588 0.93615 1.21587 0.96191 0.92802 0.99118 1.20980 0.98014 0.97175 0.95985 1.21051 1.00206 0.98547 0.92124 1.17504 1.03055 0.96507 0.80964 1.44782 1.35955 1.14099 1.08037 1.23839 1.03501 0.94216 0.98359 1.23697 1.05152 0.97591 0.93572 1.75178 1.10695 1.07159 1.19870 1.78501 1.19404 1.18395 0.88726 1.21092 0.93319 0.94531 0.97581 0.93583 0.90942 0.95529 0.92271 0.92305 0.92423 0.91762 0.91223 0.91174 0.77062 0.84234 0.83698 0.84357 0.78860 0.78738 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.32 10.58 55.49 0.59 -25.74 16 2 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.33 9.76 -15.06 -0.15 -6.47 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.59 -14.16 3.13 -162.57 -0.51 -14.67 16 10 C 0.17 3.98 5.41 -2.53 -0.01 3.97 16 11 C -0.15 -2.60 7.08 -24.58 -0.17 -2.77 16 12 C -0.13 -1.98 6.10 -24.90 -0.15 -2.13 16 13 C 0.15 2.83 3.22 -66.95 -0.22 2.62 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C 0.11 1.98 5.07 -4.04 -0.02 1.96 16 16 N -0.71 -9.93 5.28 -61.24 -0.32 -10.25 16 17 C 0.55 8.31 7.77 -12.32 -0.10 8.21 16 18 O -0.53 -10.49 16.34 5.32 0.09 -10.40 16 19 C -0.10 -1.17 5.87 -104.99 -0.62 -1.78 16 20 C -0.08 -0.57 9.54 -39.16 -0.37 -0.94 16 21 C -0.10 -0.54 10.02 -39.67 -0.40 -0.94 16 22 C -0.10 -0.59 9.45 -39.32 -0.37 -0.96 16 23 C 0.11 1.06 6.66 -83.62 -0.56 0.51 16 24 N -0.24 -2.54 3.56 -10.51 -0.04 -2.57 16 25 C -0.05 -0.36 10.91 -16.67 -0.18 -0.54 16 26 C -0.04 -0.37 12.05 -17.73 -0.21 -0.58 16 27 N -0.26 -3.35 12.40 30.24 0.37 -2.98 16 28 N -0.07 -0.98 12.42 60.35 0.75 -0.23 16 29 C -0.04 -0.53 9.16 -39.00 -0.36 -0.89 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 32 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.00 7.81 -51.93 -0.41 0.60 16 37 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 38 H 0.07 1.48 7.92 -51.93 -0.41 1.07 16 39 H 0.39 4.03 6.36 -40.82 -0.26 3.77 16 40 H 0.14 0.70 6.40 -52.49 -0.34 0.37 16 41 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.14 0.38 6.78 -52.49 -0.36 0.02 16 43 H 0.19 0.45 7.13 -52.49 -0.37 0.07 16 44 H 0.20 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.16 2.22 7.29 -52.49 -0.38 1.83 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -35.51 375.70 -8.22 -43.73 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.80 Total: 1.38 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.98 Total: -0.85 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.84 Total: -56.43 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.51 -8.22 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028350187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.433 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds