Wall clock time and date at job start Sat Apr 11 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99815 * 2 1 4 4 H 1.48505 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47429 * 299.99566 * 3 2 1 6 6 H 1.48506 * 109.47268 * 60.00039 * 3 2 1 7 7 C 1.38807 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64923 * 11.99374 * 9 7 2 11 11 C 1.54913 * 104.83093 * 155.89615 * 10 9 7 12 12 C 1.55150 * 101.57941 * 37.01052 * 11 10 9 13 13 C 1.47029 * 125.64896 * 192.02613 * 9 7 2 14 14 H 1.09000 * 110.00987 * 300.52461 * 13 9 7 15 15 C 1.52999 * 109.88156 * 61.61594 * 13 9 7 16 16 N 1.46504 * 109.47046 * 182.14889 * 15 13 9 17 17 C 1.34777 * 120.00174 * 185.08202 * 16 15 13 18 18 O 1.21580 * 119.99528 * 359.97438 * 17 16 15 19 19 C 1.47619 * 119.99945 * 179.97438 * 17 16 15 20 20 C 1.39623 * 120.18913 * 53.99390 * 19 17 16 21 21 C 1.37865 * 119.91382 * 180.27692 * 20 19 17 22 22 C 1.38498 * 120.30325 * 359.71765 * 21 20 19 23 23 C 1.38105 * 120.38400 * 0.02562 * 22 21 20 24 24 C 1.38718 * 120.07395 * 359.97438 * 23 22 21 25 25 N 1.39810 * 120.14627 * 180.02562 * 24 23 22 26 26 C 1.36332 * 126.87076 * 358.92466 * 25 24 23 27 27 C 1.34962 * 106.77716 * 180.02562 * 26 25 24 28 28 N 1.33378 * 109.01734 * 359.97438 * 27 26 25 29 29 N 1.28763 * 109.93011 * 359.97438 * 28 27 26 30 30 H 0.97006 * 119.99908 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36534 * 37.05794 * 10 9 7 32 32 H 1.08993 * 110.46028 * 274.78204 * 10 9 7 33 33 H 1.09003 * 110.99998 * 278.93739 * 11 10 9 34 34 H 1.08994 * 111.00038 * 155.08946 * 11 10 9 35 35 H 1.09004 * 110.71691 * 206.13006 * 12 11 10 36 36 H 1.09005 * 110.71663 * 82.86434 * 12 11 10 37 37 H 1.09000 * 109.46946 * 62.14888 * 15 13 9 38 38 H 1.09001 * 109.47537 * 302.14703 * 15 13 9 39 39 H 0.96995 * 119.99894 * 5.07672 * 16 15 13 40 40 H 1.07998 * 120.04224 * 359.97438 * 20 19 17 41 41 H 1.08007 * 119.84870 * 179.74410 * 21 20 19 42 42 H 1.08002 * 119.80834 * 180.02562 * 22 21 20 43 43 H 1.08001 * 119.96145 * 179.97438 * 23 22 21 44 44 H 1.08001 * 126.60629 * 0.04038 * 26 25 24 45 45 H 1.07998 * 125.48763 * 179.73371 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1188 -2.5463 -0.2489 11 6 -0.2775 -4.0041 -0.7483 12 6 0.7698 -4.7473 0.1224 13 6 1.9090 -3.7144 0.2500 14 1 2.6847 -3.9251 -0.4862 15 6 2.5021 -3.7651 1.6594 16 7 3.1258 -5.0723 1.8800 17 6 3.6262 -5.3844 3.0919 18 8 3.5603 -4.5809 4.0020 19 6 4.2541 -6.7018 3.3142 20 6 5.2882 -7.1360 2.4825 21 6 5.8667 -8.3697 2.6917 22 6 5.4310 -9.1793 3.7275 23 6 4.4127 -8.7600 4.5609 24 6 3.8193 -7.5215 4.3647 25 7 2.7887 -7.0953 5.2078 26 6 2.2445 -7.7872 6.2488 27 6 1.2848 -7.0008 6.7799 28 7 1.2316 -5.8574 6.0952 29 7 2.1082 -5.8693 5.1522 30 1 -0.4850 0.8401 -0.0004 31 1 -0.4506 -1.8449 -1.0144 32 1 -0.6830 -2.3971 0.6716 33 1 -0.0320 -4.0832 -1.8074 34 1 -1.2831 -4.3766 -0.5531 35 1 1.1205 -5.6481 -0.3813 36 1 0.3560 -4.9881 1.1017 37 1 1.7101 -3.6121 2.3926 38 1 3.2525 -2.9819 1.7664 39 1 3.1786 -5.7132 1.1538 40 1 5.6310 -6.5082 1.6734 41 1 6.6638 -8.7063 2.0452 42 1 5.8901 -10.1442 3.8844 43 1 4.0779 -9.3970 5.3662 44 1 2.5271 -8.7742 6.5840 45 1 0.6581 -7.2578 7.6211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028352678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:52 Heat of formation + Delta-G solvation = 140.872400 kcal Electronic energy + Delta-G solvation = -29555.840150 eV Core-core repulsion = 25577.329242 eV Total energy + Delta-G solvation = -3978.510908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.28491 -40.15307 -38.58840 -37.44474 -34.77087 -34.07429 -32.45987 -31.91183 -30.80730 -29.95534 -29.53394 -28.48845 -25.27867 -24.57240 -24.22234 -23.48726 -21.78285 -21.55617 -20.42937 -20.03695 -19.54296 -18.72484 -17.59433 -16.58349 -16.03061 -15.95569 -15.66657 -15.59159 -15.31709 -14.74752 -14.56216 -14.49834 -14.15960 -14.05541 -13.79587 -13.33156 -13.28401 -12.94048 -12.43830 -12.02545 -11.95717 -11.85101 -11.71957 -11.41766 -11.33466 -11.18874 -11.12017 -10.90721 -10.76554 -10.16929 -10.05756 -9.90656 -9.80262 -9.69548 -9.61186 -9.51428 -9.40864 -8.72703 -8.58664 -8.48368 -6.81062 -5.70852 -3.07381 0.18508 0.64780 1.66328 1.98313 2.50958 2.89632 3.23966 3.43026 3.48953 3.51083 3.52281 4.04940 4.22571 4.43828 4.52136 4.57167 4.68105 4.83574 4.84117 4.98576 5.06153 5.22650 5.35124 5.40074 5.45823 5.56545 5.67698 5.71844 5.81243 5.86262 5.90494 6.03157 6.12579 6.15546 6.19813 6.29875 6.50795 6.59656 6.63465 6.68421 6.76913 6.88308 7.12930 7.58470 7.65096 7.83463 7.84718 8.12252 8.30478 8.56486 9.22229 9.82974 10.49526 11.40323 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.003049 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.109875 B = 9181.824542 C = 9634.580807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.126 4.126 13 C 0.153 3.847 14 H 0.036 0.964 15 C 0.112 3.888 16 N -0.715 5.715 17 C 0.547 3.453 18 O -0.496 6.496 19 C -0.114 4.114 20 C -0.069 4.069 21 C -0.123 4.123 22 C -0.082 4.082 23 C -0.135 4.135 24 C 0.182 3.818 25 N -0.332 5.332 26 C 0.007 3.993 27 C -0.072 4.072 28 N -0.239 5.239 29 N 0.004 4.996 30 H 0.253 0.747 31 H 0.078 0.922 32 H 0.024 0.976 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.393 0.607 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.192 0.808 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 -25.121 6.956 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.200 4.200 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.013 4.013 16 N -0.366 5.366 17 C 0.330 3.670 18 O -0.369 6.369 19 C -0.120 4.120 20 C -0.088 4.088 21 C -0.141 4.141 22 C -0.101 4.101 23 C -0.157 4.157 24 C 0.088 3.912 25 N -0.114 5.114 26 C -0.141 4.141 27 C -0.225 4.225 28 N -0.110 5.110 29 N 0.025 4.975 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.226 0.774 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.209 0.791 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 8.633 -22.852 6.930 25.392 hybrid contribution 0.666 -0.548 0.427 0.962 sum 9.299 -23.400 7.356 26.232 Atomic orbital electron populations 1.69946 1.04986 1.25087 1.56218 1.24873 0.95686 0.97816 1.01609 0.86066 0.78868 0.83735 0.77224 1.20419 1.21763 1.21609 1.19041 0.90435 0.82202 1.44266 0.90535 1.44506 1.04964 1.00443 1.81391 1.21505 0.84488 0.90457 0.98963 1.23004 0.97329 0.99630 0.98728 1.22598 0.97056 0.96877 0.99862 1.21104 0.94191 0.87942 0.92289 0.94596 1.22250 0.97436 0.81937 0.99645 1.46012 1.60000 1.19213 1.11420 1.17848 0.79567 0.86069 0.83509 1.90872 1.55061 1.49349 1.41629 1.19960 0.99759 0.95912 0.96388 1.21300 0.93812 0.96043 0.97613 1.21241 1.00484 0.94030 0.98381 1.21126 0.95108 0.99945 0.93913 1.20831 0.98542 0.94175 1.02108 1.17461 0.88974 0.94034 0.90735 1.48174 1.26180 1.14635 1.22374 1.23473 0.98127 1.00699 0.91836 1.23269 1.02827 0.91538 1.04896 1.74501 1.13499 1.19841 1.03189 1.82969 1.02583 0.95730 1.16179 0.93690 0.90411 0.95815 0.92337 0.92422 0.92581 0.91852 0.91262 0.91584 0.77383 0.84022 0.84521 0.84426 0.84564 0.79092 0.79517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 10.48 55.49 0.58 -26.65 16 2 C 0.00 -0.08 5.47 -17.43 -0.10 -0.18 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.23 -6.46 9.78 -15.06 -0.15 -6.61 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.59 -15.00 3.13 -162.58 -0.51 -15.51 16 10 C 0.17 4.20 5.46 -2.53 -0.01 4.19 16 11 C -0.15 -2.83 7.09 -24.58 -0.17 -3.00 16 12 C -0.13 -2.22 6.09 -24.91 -0.15 -2.37 16 13 C 0.15 3.12 3.22 -66.96 -0.22 2.90 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.27 5.07 -4.04 -0.02 2.25 16 16 N -0.71 -11.44 5.30 -61.32 -0.32 -11.77 16 17 C 0.55 9.31 6.11 -12.43 -0.08 9.23 16 18 O -0.50 -10.74 14.17 5.30 0.08 -10.66 16 19 C -0.11 -1.47 5.66 -104.83 -0.59 -2.06 16 20 C -0.07 -0.62 9.72 -39.20 -0.38 -1.00 16 21 C -0.12 -0.78 10.02 -39.62 -0.40 -1.17 16 22 C -0.08 -0.47 10.03 -39.53 -0.40 -0.87 16 23 C -0.14 -1.01 9.47 -39.45 -0.37 -1.39 16 24 C 0.18 2.16 6.70 -83.32 -0.56 1.60 16 25 N -0.33 -4.58 3.84 -10.32 -0.04 -4.62 16 26 C 0.01 0.07 10.92 -16.71 -0.18 -0.12 16 27 C -0.07 -0.84 11.86 -18.04 -0.21 -1.06 16 28 N -0.24 -4.12 12.33 30.09 0.37 -3.75 16 29 N 0.00 0.07 9.30 60.35 0.56 0.63 16 30 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.08 2.12 6.74 -51.93 -0.35 1.77 16 32 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.15 7.81 -51.93 -0.41 0.75 16 37 H 0.07 1.63 8.08 -51.93 -0.42 1.21 16 38 H 0.07 1.49 7.93 -51.93 -0.41 1.08 16 39 H 0.39 5.01 8.27 -40.82 -0.34 4.68 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 42 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.14 0.61 6.84 -52.49 -0.36 0.25 16 44 H 0.19 0.84 7.17 -52.49 -0.38 0.47 16 45 H 0.19 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -37.50 373.96 -8.67 -46.17 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.01 Total: 2.58 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.99 Total: 0.37 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.64 Total: -61.66 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.50 -8.67 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028352678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.042 kcal (2) G-P(sol) polarization free energy of solvation -37.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds