Wall clock time and date at job start Sat Apr 11 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99815 * 2 1 4 4 H 1.48505 * 109.47118 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47429 * 299.99566 * 3 2 1 6 6 H 1.48506 * 109.47268 * 60.00039 * 3 2 1 7 7 C 1.38807 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.47421 * 125.64923 * 11.99374 * 9 7 2 11 11 C 1.54913 * 104.83093 * 155.89615 * 10 9 7 12 12 C 1.55150 * 101.57941 * 37.01052 * 11 10 9 13 13 C 1.47029 * 125.64896 * 192.02613 * 9 7 2 14 14 H 1.09000 * 110.00987 * 300.52461 * 13 9 7 15 15 C 1.52999 * 109.88156 * 61.61594 * 13 9 7 16 16 N 1.46504 * 109.47046 * 182.14889 * 15 13 9 17 17 C 1.34777 * 120.00174 * 185.08202 * 16 15 13 18 18 O 1.21580 * 119.99528 * 359.97438 * 17 16 15 19 19 C 1.47619 * 119.99945 * 179.97438 * 17 16 15 20 20 C 1.39623 * 120.18913 * 53.99390 * 19 17 16 21 21 C 1.37865 * 119.91382 * 180.27692 * 20 19 17 22 22 C 1.38498 * 120.30325 * 359.71765 * 21 20 19 23 23 C 1.38105 * 120.38400 * 0.02562 * 22 21 20 24 24 C 1.38718 * 120.07395 * 359.97438 * 23 22 21 25 25 N 1.39810 * 120.14627 * 180.02562 * 24 23 22 26 26 C 1.36332 * 126.87076 * 358.92466 * 25 24 23 27 27 C 1.34962 * 106.77716 * 180.02562 * 26 25 24 28 28 N 1.33378 * 109.01734 * 359.97438 * 27 26 25 29 29 N 1.28763 * 109.93011 * 359.97438 * 28 27 26 30 30 H 0.97006 * 119.99908 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36534 * 37.05794 * 10 9 7 32 32 H 1.08993 * 110.46028 * 274.78204 * 10 9 7 33 33 H 1.09003 * 110.99998 * 278.93739 * 11 10 9 34 34 H 1.08994 * 111.00038 * 155.08946 * 11 10 9 35 35 H 1.09004 * 110.71691 * 206.13006 * 12 11 10 36 36 H 1.09005 * 110.71663 * 82.86434 * 12 11 10 37 37 H 1.09000 * 109.46946 * 62.14888 * 15 13 9 38 38 H 1.09001 * 109.47537 * 302.14703 * 15 13 9 39 39 H 0.96995 * 119.99894 * 5.07672 * 16 15 13 40 40 H 1.07998 * 120.04224 * 359.97438 * 20 19 17 41 41 H 1.08007 * 119.84870 * 179.74410 * 21 20 19 42 42 H 1.08002 * 119.80834 * 180.02562 * 22 21 20 43 43 H 1.08001 * 119.96145 * 179.97438 * 23 22 21 44 44 H 1.08001 * 126.60629 * 0.04038 * 26 25 24 45 45 H 1.07998 * 125.48763 * 179.73371 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1188 -2.5463 -0.2489 11 6 -0.2775 -4.0041 -0.7483 12 6 0.7698 -4.7473 0.1224 13 6 1.9090 -3.7144 0.2500 14 1 2.6847 -3.9251 -0.4862 15 6 2.5021 -3.7651 1.6594 16 7 3.1258 -5.0723 1.8800 17 6 3.6262 -5.3844 3.0919 18 8 3.5603 -4.5809 4.0020 19 6 4.2541 -6.7018 3.3142 20 6 5.2882 -7.1360 2.4825 21 6 5.8667 -8.3697 2.6917 22 6 5.4310 -9.1793 3.7275 23 6 4.4127 -8.7600 4.5609 24 6 3.8193 -7.5215 4.3647 25 7 2.7887 -7.0953 5.2078 26 6 2.2445 -7.7872 6.2488 27 6 1.2848 -7.0008 6.7799 28 7 1.2316 -5.8574 6.0952 29 7 2.1082 -5.8693 5.1522 30 1 -0.4850 0.8401 -0.0004 31 1 -0.4506 -1.8449 -1.0144 32 1 -0.6830 -2.3971 0.6716 33 1 -0.0320 -4.0832 -1.8074 34 1 -1.2831 -4.3766 -0.5531 35 1 1.1205 -5.6481 -0.3813 36 1 0.3560 -4.9881 1.1017 37 1 1.7101 -3.6121 2.3926 38 1 3.2525 -2.9819 1.7664 39 1 3.1786 -5.7132 1.1538 40 1 5.6310 -6.5082 1.6734 41 1 6.6638 -8.7063 2.0452 42 1 5.8901 -10.1442 3.8844 43 1 4.0779 -9.3970 5.3662 44 1 2.5271 -8.7742 6.5840 45 1 0.6581 -7.2578 7.6211 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028352678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:51 Heat of formation + Delta-G solvation = 113.051401 kcal Electronic energy + Delta-G solvation = -29557.046559 eV Core-core repulsion = 25577.329242 eV Total energy + Delta-G solvation = -3979.717317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.19865 -41.18272 -39.79615 -39.01561 -35.85769 -35.41548 -34.43127 -32.75802 -31.68087 -31.41324 -30.73560 -30.10514 -26.87303 -26.15137 -25.16509 -24.69108 -22.85784 -22.32545 -22.05566 -21.40410 -21.13889 -19.67657 -18.89081 -18.26027 -17.43899 -16.88611 -16.82805 -16.54228 -16.41208 -16.15010 -15.83956 -15.76299 -15.56482 -15.20565 -14.90641 -14.56149 -14.46518 -14.10469 -13.92442 -13.69977 -13.47614 -13.13381 -13.01456 -12.89882 -12.72445 -12.57054 -12.22689 -12.17701 -12.11397 -12.00747 -11.89682 -11.73813 -11.50718 -11.47032 -10.99716 -10.72718 -10.39690 -10.14120 -9.99737 -9.50502 -8.91522 -7.89635 -5.27840 -0.58494 0.04120 0.89148 1.20687 1.40777 1.44108 1.53074 1.58181 1.75738 2.14210 2.47546 2.66039 3.28899 3.32293 3.55490 3.61436 3.77388 3.88581 3.91964 3.94462 4.07438 4.14114 4.20412 4.25364 4.29572 4.36918 4.41674 4.49792 4.59548 4.67123 4.79609 4.91111 4.94616 5.07985 5.09244 5.15288 5.20207 5.28477 5.34963 5.37498 5.43650 5.54245 5.60440 5.62479 5.74323 5.91533 6.20179 6.56679 7.05964 7.15383 7.31835 7.73008 8.38554 9.20724 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.003049 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.109875 B = 9181.824542 C = 9634.580807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.297 1.297 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.132 4.132 12 C -0.112 4.112 13 C 0.151 3.849 14 H 0.058 0.942 15 C 0.138 3.862 16 N -0.702 5.702 17 C 0.546 3.454 18 O -0.553 6.553 19 C -0.147 4.147 20 C -0.073 4.073 21 C -0.108 4.108 22 C -0.064 4.064 23 C -0.122 4.122 24 C 0.145 3.855 25 N -0.332 5.332 26 C 0.033 3.967 27 C -0.087 4.087 28 N -0.293 5.293 29 N -0.077 5.077 30 H 0.247 0.753 31 H 0.045 0.955 32 H -0.017 1.017 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.023 0.977 38 H 0.032 0.968 39 H 0.412 0.588 40 H 0.148 0.852 41 H 0.174 0.826 42 H 0.184 0.816 43 H 0.174 0.826 44 H 0.254 0.746 45 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.814 -30.818 6.576 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.225 1.225 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.170 4.170 12 C -0.149 4.149 13 C 0.044 3.956 14 H 0.076 0.924 15 C 0.011 3.989 16 N -0.355 5.355 17 C 0.332 3.668 18 O -0.429 6.429 19 C -0.152 4.152 20 C -0.092 4.092 21 C -0.126 4.126 22 C -0.083 4.083 23 C -0.143 4.143 24 C 0.052 3.948 25 N -0.114 5.114 26 C -0.116 4.116 27 C -0.242 4.242 28 N -0.162 5.162 29 N -0.054 5.054 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.001 0.999 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.249 0.751 40 H 0.166 0.834 41 H 0.191 0.809 42 H 0.202 0.798 43 H 0.191 0.809 44 H 0.270 0.730 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.524 -28.586 6.493 31.498 hybrid contribution -0.087 0.981 0.622 1.165 sum 11.437 -27.605 7.115 30.716 Atomic orbital electron populations 1.70161 1.06341 1.25271 1.57787 1.25692 0.96572 1.01094 1.02259 0.85077 0.78298 0.79652 0.76741 1.19032 1.21124 1.22469 1.19375 0.90826 0.83571 1.42992 0.90341 1.44788 1.05428 1.01675 1.81639 1.21308 0.83879 0.93816 0.96286 1.22867 0.99184 0.95261 0.99682 1.22556 0.95246 0.97519 0.99624 1.21314 0.95706 0.86557 0.92037 0.92417 1.21591 0.95218 0.83516 0.98570 1.45705 1.59578 1.17810 1.12395 1.18612 0.78395 0.87459 0.82364 1.90834 1.57158 1.51690 1.43224 1.19720 1.02058 0.94199 0.99225 1.21481 0.92949 0.97563 0.97246 1.21710 1.00106 0.92294 0.98534 1.21738 0.93351 1.01141 0.92023 1.21333 0.97804 0.92216 1.02929 1.18010 0.89860 0.95938 0.90991 1.48410 1.26063 1.13847 1.23104 1.24475 0.95848 1.01912 0.89361 1.24043 1.04074 0.90416 1.05675 1.74429 1.14581 1.22785 1.04435 1.82939 1.05196 0.98873 1.18370 0.94331 0.93620 0.99907 0.90505 0.90197 0.87623 0.92986 0.95836 0.94908 0.75145 0.83425 0.80896 0.79830 0.80862 0.72969 0.76124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 10.48 21.65 0.23 -59.46 16 2 C -0.06 -3.76 5.47 84.86 0.46 -3.29 16 3 Si 0.97 48.41 29.55 68.60 2.03 50.43 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 7 C -0.24 -13.95 9.78 84.03 0.82 -13.13 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.61 -32.58 3.13 -668.28 -2.09 -34.67 16 10 C 0.17 8.94 5.46 86.86 0.47 9.42 16 11 C -0.13 -4.92 7.09 31.98 0.23 -4.70 16 12 C -0.11 -3.82 6.09 31.78 0.19 -3.62 16 13 C 0.15 6.27 3.22 45.34 0.15 6.42 16 14 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 15 C 0.14 6.02 5.07 86.38 0.44 6.46 16 16 N -0.70 -23.52 5.30 -466.18 -2.47 -25.99 16 17 C 0.55 19.75 6.11 86.72 0.53 20.28 16 18 O -0.55 -26.31 14.17 -3.97 -0.06 -26.37 16 19 C -0.15 -3.69 5.66 -20.00 -0.11 -3.80 16 20 C -0.07 -1.14 9.72 22.52 0.22 -0.92 16 21 C -0.11 -0.78 10.02 22.24 0.22 -0.56 16 22 C -0.06 -0.31 10.03 22.30 0.22 -0.08 16 23 C -0.12 -1.19 9.47 22.35 0.21 -0.97 16 24 C 0.15 3.18 6.70 38.45 0.26 3.44 16 25 N -0.33 -9.07 3.84 -186.57 -0.72 -9.79 16 26 C 0.03 0.58 10.92 83.24 0.91 1.48 16 27 C -0.09 -2.00 11.86 83.70 0.99 -1.00 16 28 N -0.29 -10.91 12.33 -58.72 -0.72 -11.63 16 29 N -0.08 -3.06 9.30 37.02 0.34 -2.72 16 30 H 0.25 15.12 8.31 -92.70 -0.77 14.34 16 31 H 0.05 2.63 6.74 -2.39 -0.02 2.62 16 32 H -0.02 -1.01 8.11 -2.39 -0.02 -1.03 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 36 H 0.05 1.91 7.81 -2.38 -0.02 1.89 16 37 H 0.02 1.22 8.08 -2.39 -0.02 1.21 16 38 H 0.03 1.62 7.93 -2.39 -0.02 1.60 16 39 H 0.41 10.31 8.27 -92.71 -0.77 9.54 16 40 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.17 0.06 8.06 -2.91 -0.02 0.04 16 42 H 0.18 -0.66 8.06 -2.91 -0.02 -0.69 16 43 H 0.17 0.31 6.84 -2.91 -0.02 0.29 16 44 H 0.25 0.72 7.17 -2.91 -0.02 0.70 16 45 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -97.08 373.96 3.01 -94.06 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.26 Total: 10.69 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 6.22 Total: 15.43 kcal Atomic # 7 Polarization: -138.83 SS G_CDS: -5.43 Total: -144.26 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.06 Total: -26.37 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.43 kcal Total: -97.08 3.01 -94.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028352678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 207.116 kcal (2) G-P(sol) polarization free energy of solvation -97.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds