Wall clock time and date at job start Sat Apr 11 2020 06:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00356 * 2 1 4 4 H 1.48497 * 109.47563 * 240.00202 * 3 2 1 5 5 H 1.48504 * 109.46777 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47166 * 119.99925 * 3 2 1 7 7 C 1.38813 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00306 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64618 * 359.69358 * 9 7 2 11 11 C 1.54327 * 107.26774 * 179.20447 * 10 9 7 12 12 C 1.55155 * 102.94571 * 337.80617 * 11 10 9 13 13 H 1.08997 * 111.00368 * 277.43464 * 12 11 10 14 14 C 1.52996 * 111.00532 * 153.57522 * 12 11 10 15 15 N 1.46497 * 109.47114 * 181.35298 * 14 12 11 16 16 C 1.34775 * 119.99944 * 180.02562 * 15 14 12 17 17 O 1.21611 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.47329 * 120.00065 * 179.97438 * 16 15 14 19 19 C 1.37913 * 126.79961 * 359.68148 * 18 16 15 20 20 N 1.34204 * 107.88800 * 179.87149 * 19 18 16 21 21 H 0.96996 * 125.16034 * 180.13403 * 20 19 18 22 22 N 1.39771 * 109.66768 * 0.40848 * 20 19 18 23 23 C 1.31380 * 109.07209 * 359.74413 * 22 20 19 24 24 C 1.48240 * 126.51385 * 179.97438 * 23 22 20 25 25 C 1.39379 * 119.73074 * 334.73135 * 24 23 22 26 26 C 1.38391 * 119.06331 * 179.79000 * 25 24 23 27 27 C 1.38792 * 118.51560 * 0.47457 * 26 25 24 28 28 C 1.38261 * 119.37197 * 359.74364 * 27 26 25 29 29 N 1.31750 * 120.89878 * 0.02567 * 28 27 26 30 30 C 1.47426 * 125.64875 * 180.02562 * 9 7 2 31 31 H 0.97001 * 119.99407 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.88316 * 298.61939 * 10 9 7 33 33 H 1.09002 * 109.88101 * 59.78834 * 10 9 7 34 34 H 1.08999 * 110.71564 * 219.44370 * 11 10 9 35 35 H 1.09000 * 110.86856 * 96.24526 * 11 10 9 36 36 H 1.09002 * 109.47242 * 301.35140 * 14 12 11 37 37 H 1.09002 * 109.46968 * 61.35264 * 14 12 11 38 38 H 0.97000 * 119.99896 * 359.97438 * 15 14 12 39 39 H 1.07997 * 126.05547 * 359.97438 * 19 18 16 40 40 H 1.08000 * 120.46860 * 0.02562 * 25 24 23 41 41 H 1.07999 * 120.74094 * 180.22150 * 26 25 24 42 42 H 1.07997 * 120.31314 * 179.72585 * 27 26 25 43 43 H 1.08000 * 119.54986 * 180.02562 * 28 27 26 44 44 H 1.09002 * 110.36518 * 322.70049 * 30 9 7 45 45 H 1.08995 * 110.36673 * 84.91158 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 0.0064 11 6 -0.4487 -4.0441 -0.0169 12 6 0.8490 -4.6570 -0.6067 13 1 0.8490 -4.5986 -1.6951 14 6 1.0361 -6.1010 -0.1371 15 7 2.2848 -6.6352 -0.6863 16 6 2.6586 -7.8990 -0.4047 17 8 1.9596 -8.5959 0.3058 18 6 3.9141 -8.4364 -0.9575 19 6 4.8047 -7.7766 -1.7781 20 7 5.8145 -8.6173 -2.0510 21 1 6.5812 -8.4076 -2.6069 22 7 5.5904 -9.8430 -1.4177 23 6 4.4609 -9.7807 -0.7494 24 6 3.8544 -10.8641 0.0605 25 6 4.1551 -12.1941 -0.2282 26 6 3.5846 -13.1942 0.5395 27 6 2.7231 -12.8320 1.5657 28 6 2.4653 -11.4929 1.7937 29 7 3.0254 -10.5600 1.0509 30 6 1.9333 -3.7312 -0.0005 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5503 -2.0832 0.9095 33 1 -0.5617 -2.0533 -0.8759 34 1 -1.3017 -4.2523 -0.6628 35 1 -0.6290 -4.4190 0.9906 36 1 1.0780 -6.1265 0.9518 37 1 0.1986 -6.7069 -0.4828 38 1 2.8421 -6.0795 -1.2533 39 1 4.7076 -6.7623 -2.1362 40 1 4.8269 -12.4405 -1.0371 41 1 3.8016 -14.2336 0.3420 42 1 2.2583 -13.5889 2.1799 43 1 1.7957 -11.2077 2.5917 44 1 2.8303 -3.7416 -0.6198 45 1 2.1723 -4.0394 1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028588907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:03 Heat of formation + Delta-G solvation = 112.002273 kcal Electronic energy + Delta-G solvation = -28439.563671 eV Core-core repulsion = 24459.800861 eV Total energy + Delta-G solvation = -3979.762810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42176 -39.92826 -38.99131 -37.45182 -34.44607 -33.19421 -32.53801 -32.46808 -30.81775 -30.27301 -29.52379 -28.06922 -25.53605 -24.46978 -23.90967 -23.60090 -22.48820 -20.76854 -20.24998 -19.84161 -19.58080 -18.52379 -16.99204 -16.84174 -16.28246 -16.15513 -15.79689 -15.68862 -15.29651 -14.88419 -14.61362 -14.24092 -14.14722 -13.84997 -13.74446 -13.52826 -13.33262 -12.89396 -12.76598 -12.29266 -11.99299 -11.93223 -11.66830 -11.38043 -11.29943 -10.88891 -10.76929 -10.54837 -10.33638 -10.14638 -9.99497 -9.92936 -9.82648 -9.64276 -9.59483 -9.18326 -9.17637 -8.79406 -8.62967 -8.58275 -6.81190 -5.69858 -3.03227 0.57379 1.18113 1.33603 2.08262 2.31754 3.40265 3.42088 3.44586 3.46062 3.59868 3.80005 3.85208 4.27041 4.50302 4.59270 4.68069 4.76558 4.90693 4.96836 5.12331 5.18805 5.28360 5.33921 5.36294 5.48790 5.58314 5.58993 5.74709 5.82568 5.92866 5.97057 6.05367 6.14510 6.19131 6.40391 6.51056 6.52778 6.59217 6.62743 6.75129 6.80144 6.97514 7.11781 7.57136 7.66595 7.81510 7.84639 7.96422 8.28044 8.61035 9.23634 9.84249 10.50827 11.41803 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.002216 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.024381 B =12631.638014 C =13645.963172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.078 0.922 14 C 0.139 3.861 15 N -0.729 5.729 16 C 0.580 3.420 17 O -0.503 6.503 18 C -0.252 4.252 19 C 0.100 3.900 20 N -0.461 5.461 21 H 0.445 0.555 22 N -0.277 5.277 23 C 0.170 3.830 24 C 0.187 3.813 25 C -0.143 4.143 26 C -0.086 4.086 27 C -0.166 4.166 28 C 0.102 3.898 29 N -0.406 5.406 30 C 0.143 3.857 31 H 0.252 0.748 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.394 0.606 39 H 0.192 0.808 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.159 0.841 44 H 0.033 0.967 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.443 -24.654 -3.625 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.096 0.904 14 C 0.015 3.985 15 N -0.381 5.381 16 C 0.365 3.635 17 O -0.377 6.377 18 C -0.268 4.268 19 C -0.049 4.049 20 N -0.168 5.168 21 H 0.290 0.710 22 N -0.099 5.099 23 C 0.001 3.999 24 C 0.048 3.952 25 C -0.164 4.164 26 C -0.112 4.112 27 C -0.187 4.187 28 C -0.057 4.057 29 N -0.115 5.115 30 C 0.017 3.983 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.227 0.773 39 H 0.209 0.791 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.052 0.948 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.651 -24.732 -3.238 26.400 hybrid contribution 0.697 1.085 -0.657 1.447 sum 9.348 -23.647 -3.895 25.724 Atomic orbital electron populations 1.69958 1.04864 1.25099 1.57015 1.24806 0.95724 0.97656 1.02348 0.86206 0.78443 0.83289 0.77839 1.21237 1.21616 1.21208 1.18999 0.90345 0.82499 1.43855 0.90597 1.44484 1.01767 0.99880 1.87190 1.21141 0.84294 0.88258 1.01029 1.22853 0.95520 0.99298 0.99713 1.22604 0.98440 0.92285 1.00347 0.90382 1.21301 0.85171 0.93314 0.98696 1.45895 1.25297 1.13591 1.53348 1.17096 0.84189 0.81481 0.80733 1.90869 1.53254 1.57660 1.35934 1.21432 1.00717 0.94766 1.09844 1.23143 0.88376 0.97016 0.96373 1.45904 1.20576 1.09213 1.41059 0.70989 1.77243 1.17192 1.01770 1.13735 1.21295 0.91392 0.92186 0.94987 1.18367 0.94532 0.88719 0.93582 1.22065 1.00730 0.92639 1.00956 1.21469 0.95593 0.99691 0.94452 1.22314 0.99304 0.98206 0.98860 1.22839 0.97137 0.88364 0.97314 1.67921 1.03889 1.37026 1.02680 1.21560 0.93882 0.86081 0.96806 0.93721 0.93987 0.93600 0.92063 0.92185 0.91449 0.91918 0.77259 0.79145 0.84611 0.84700 0.84745 0.82423 0.94849 0.96241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.08 10.31 55.49 0.57 -26.51 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 9 N -0.61 -15.33 3.39 -170.05 -0.58 -15.90 16 10 C 0.18 4.28 5.37 -3.06 -0.02 4.26 16 11 C -0.13 -2.47 6.42 -24.90 -0.16 -2.63 16 12 C -0.12 -1.93 3.11 -88.46 -0.27 -2.20 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C 0.14 2.04 5.12 -4.05 -0.02 2.02 16 15 N -0.73 -9.56 5.40 -61.42 -0.33 -9.89 16 16 C 0.58 8.58 7.81 -12.56 -0.10 8.48 16 17 O -0.50 -8.99 13.67 5.27 0.07 -8.92 16 18 C -0.25 -3.19 6.31 -102.94 -0.65 -3.83 16 19 C 0.10 0.85 11.50 -16.63 -0.19 0.65 16 20 N -0.46 -3.61 7.20 30.81 0.22 -3.39 16 21 H 0.45 1.76 8.96 -182.85 -1.64 0.12 16 22 N -0.28 -3.13 12.53 34.57 0.43 -2.69 16 23 C 0.17 2.25 7.11 -80.57 -0.57 1.67 16 24 C 0.19 2.49 6.63 -82.96 -0.55 1.94 16 25 C -0.14 -1.47 9.75 -39.10 -0.38 -1.85 16 26 C -0.09 -0.71 10.17 -39.32 -0.40 -1.11 16 27 C -0.17 -1.40 10.11 -39.37 -0.40 -1.80 16 28 C 0.10 1.15 11.17 -17.58 -0.20 0.95 16 29 N -0.41 -5.89 7.06 -9.79 -0.07 -5.96 16 30 C 0.14 2.83 6.41 -2.52 -0.02 2.82 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 33 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 36 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.39 4.24 7.29 -40.82 -0.30 3.94 16 39 H 0.19 0.88 7.48 -52.49 -0.39 0.49 16 40 H 0.14 1.20 8.04 -52.49 -0.42 0.77 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -36.65 376.89 -10.48 -47.13 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.28 Total: 0.95 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -4.18 Total: 2.54 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: 0.25 Total: -64.34 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.65 -10.48 -47.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028588907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.132 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds