Wall clock time and date at job start Sat Apr 11 2020 06:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 119.99894 * 2 1 4 4 H 1.48507 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47634 * 300.00593 * 3 2 1 6 6 H 1.48498 * 109.46949 * 60.00997 * 3 2 1 7 7 C 1.38811 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64946 * 359.97058 * 9 7 2 11 11 C 1.54915 * 104.83143 * 155.90864 * 10 9 7 12 12 C 1.55152 * 101.58003 * 37.01078 * 11 10 9 13 13 H 1.09005 * 110.71934 * 83.03761 * 12 11 10 14 14 C 1.52995 * 110.72360 * 206.13414 * 12 11 10 15 15 N 1.46500 * 109.47787 * 182.56124 * 14 12 11 16 16 C 1.34774 * 120.00127 * 179.97438 * 15 14 12 17 17 O 1.21610 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.47321 * 119.99573 * 180.02562 * 16 15 14 19 19 C 1.37913 * 126.80662 * 0.12276 * 18 16 15 20 20 N 1.34198 * 107.89371 * 180.26745 * 19 18 16 21 21 H 0.97005 * 125.16609 * 179.78577 * 20 19 18 22 22 N 1.39776 * 109.67003 * 359.75535 * 20 19 18 23 23 C 1.31381 * 109.06729 * 0.02562 * 22 20 19 24 24 C 1.48240 * 126.51387 * 179.97438 * 23 22 20 25 25 C 1.39375 * 119.73353 * 335.02707 * 24 23 22 26 26 C 1.38388 * 119.06946 * 180.02562 * 25 24 23 27 27 C 1.38791 * 118.51289 * 0.02562 * 26 25 24 28 28 C 1.38257 * 119.37521 * 359.97438 * 27 26 25 29 29 N 1.31752 * 120.89431 * 0.28430 * 28 27 26 30 30 C 1.47318 * 125.61404 * 180.20006 * 9 7 2 31 31 H 0.97004 * 120.00027 * 359.97438 * 1 2 3 32 32 H 1.09004 * 110.36332 * 37.07638 * 10 9 7 33 33 H 1.08996 * 110.46461 * 274.79176 * 10 9 7 34 34 H 1.09002 * 111.00215 * 278.93960 * 11 10 9 35 35 H 1.09001 * 111.03681 * 155.10176 * 11 10 9 36 36 H 1.09007 * 109.47321 * 62.55971 * 14 12 11 37 37 H 1.09002 * 109.47266 * 302.56217 * 14 12 11 38 38 H 0.97005 * 119.99455 * 359.97438 * 15 14 12 39 39 H 1.07993 * 126.05413 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.46823 * 359.97438 * 25 24 23 41 41 H 1.08003 * 120.74467 * 180.02562 * 26 25 24 42 42 H 1.08008 * 120.31380 * 179.97438 * 27 26 25 43 43 H 1.08002 * 119.54898 * 179.97438 * 28 27 26 44 44 H 1.08996 * 110.06670 * 61.67931 * 30 9 7 45 45 H 1.08998 * 109.84666 * 300.41839 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2123 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1416 -2.5331 0.0006 11 6 -0.4021 -3.9323 -0.6111 12 6 0.7783 -4.7524 -0.0270 13 1 0.5453 -5.1006 0.9793 14 6 1.1224 -5.9313 -0.9394 15 7 2.1973 -6.7207 -0.3331 16 6 2.6670 -7.8156 -0.9632 17 8 2.1989 -8.1481 -2.0352 18 6 3.7476 -8.6097 -0.3531 19 6 4.3752 -8.3642 0.8501 20 7 5.3019 -9.3173 1.0339 21 1 5.8921 -9.3822 1.8009 22 7 5.2870 -10.2027 -0.0476 23 6 4.3675 -9.8189 -0.9039 24 6 4.0253 -10.4797 -2.1860 25 6 4.9790 -11.2595 -2.8379 26 6 4.6450 -11.8696 -4.0342 27 6 3.3668 -11.6795 -4.5407 28 6 2.4703 -10.8929 -3.8415 29 7 2.8155 -10.3190 -2.7069 30 6 1.9337 -3.7298 0.0031 31 1 -0.4850 0.8401 0.0004 32 1 -0.5998 -1.7588 -0.6147 33 1 -0.5283 -2.4862 1.0186 34 1 -0.3533 -3.8981 -1.6995 35 1 -1.3593 -4.3331 -0.2775 36 1 1.4495 -5.5566 -1.9094 37 1 0.2407 -6.5585 -1.0708 38 1 2.5710 -6.4553 0.5218 39 1 4.1617 -7.5472 1.5233 40 1 5.9651 -11.3852 -2.4157 41 1 5.3628 -12.4801 -4.5619 42 1 3.0753 -12.1417 -5.4724 43 1 1.4751 -10.7427 -4.2333 44 1 2.5281 -3.8685 0.9061 45 1 2.5616 -3.8539 -0.8792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028588908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:06 Heat of formation + Delta-G solvation = 113.295031 kcal Electronic energy + Delta-G solvation = -28447.277221 eV Core-core repulsion = 24467.570469 eV Total energy + Delta-G solvation = -3979.706752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.42554 -39.92486 -38.99422 -37.44037 -34.44853 -33.19616 -32.53644 -32.47813 -30.81462 -30.27333 -29.52198 -28.04900 -25.54531 -24.46946 -23.90974 -23.59493 -22.47838 -20.77342 -20.34256 -19.74300 -19.58613 -18.50451 -16.99024 -16.86099 -16.30801 -16.16043 -15.79727 -15.64497 -15.35442 -14.90706 -14.65425 -14.28702 -14.07664 -13.86700 -13.70707 -13.55362 -13.37027 -12.81256 -12.60579 -12.46850 -11.98581 -11.71896 -11.63766 -11.44025 -11.36465 -10.92808 -10.81175 -10.54796 -10.35234 -10.09589 -9.98678 -9.94439 -9.82541 -9.65662 -9.47400 -9.18020 -9.17643 -8.79146 -8.64528 -8.62481 -6.81783 -5.64409 -3.05857 0.57605 1.18626 1.32964 2.08437 2.31026 3.39748 3.42557 3.45184 3.47724 3.59708 3.80088 3.84896 4.26621 4.49448 4.59314 4.68339 4.76441 4.91181 4.97091 5.11732 5.18445 5.30800 5.34485 5.36632 5.46505 5.56294 5.58741 5.76194 5.82830 5.93263 5.95871 6.05758 6.17636 6.23653 6.39506 6.51413 6.57263 6.63026 6.64660 6.74722 6.82596 6.96299 7.11204 7.53873 7.64077 7.81352 7.87716 7.96347 8.38076 8.61329 9.23399 9.84295 10.49510 11.39541 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017032 B = 0.002218 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.552081 B =12619.893767 C =13238.902968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.114 4.114 13 H 0.074 0.926 14 C 0.138 3.862 15 N -0.729 5.729 16 C 0.579 3.421 17 O -0.502 6.502 18 C -0.252 4.252 19 C 0.100 3.900 20 N -0.461 5.461 21 H 0.445 0.555 22 N -0.277 5.277 23 C 0.171 3.829 24 C 0.186 3.814 25 C -0.142 4.142 26 C -0.086 4.086 27 C -0.166 4.166 28 C 0.102 3.898 29 N -0.407 5.407 30 C 0.141 3.859 31 H 0.251 0.749 32 H 0.106 0.894 33 H 0.011 0.989 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.393 0.607 39 H 0.191 0.809 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.017 0.983 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 -24.489 -1.373 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.133 4.133 13 H 0.093 0.907 14 C 0.015 3.985 15 N -0.382 5.382 16 C 0.365 3.635 17 O -0.376 6.376 18 C -0.267 4.267 19 C -0.050 4.050 20 N -0.168 5.168 21 H 0.290 0.710 22 N -0.099 5.099 23 C 0.002 3.998 24 C 0.048 3.952 25 C -0.163 4.163 26 C -0.112 4.112 27 C -0.186 4.186 28 C -0.057 4.057 29 N -0.116 5.116 30 C 0.015 3.985 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.208 0.792 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.035 0.965 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 8.377 -24.808 -1.462 26.225 hybrid contribution 1.082 1.144 0.478 1.645 sum 9.458 -23.664 -0.984 25.503 Atomic orbital electron populations 1.69811 1.04871 1.24611 1.57793 1.24789 0.95735 0.97710 1.02577 0.86008 0.78621 0.83687 0.77245 1.20585 1.21733 1.21799 1.19119 0.90497 0.82531 1.42782 0.90538 1.44593 1.01991 0.99737 1.86814 1.21921 0.84625 0.92611 0.98136 1.22997 0.95575 0.98516 1.00342 1.22436 0.98130 0.94117 0.98636 0.90739 1.21365 0.89188 0.91313 0.96635 1.45909 1.39714 1.27837 1.24724 1.17095 0.81499 0.79957 0.84988 1.90873 1.58102 1.68248 1.20385 1.21438 1.06252 1.01468 0.97556 1.23125 0.90472 0.93951 0.97412 1.45901 1.30702 1.20833 1.19338 0.71003 1.77246 1.21578 1.14200 0.96918 1.21298 0.92789 0.92810 0.92922 1.18362 0.90736 0.94893 0.91245 1.22067 1.00597 0.97624 0.96060 1.21471 0.96601 0.98051 0.95060 1.22315 0.94685 1.00306 1.01343 1.22833 0.99910 0.92327 0.90621 1.67910 1.16854 1.15474 1.11321 1.21384 0.93538 0.85928 0.97614 0.93800 0.87592 0.97088 0.91837 0.92159 0.91458 0.91739 0.77354 0.79187 0.84596 0.84679 0.84734 0.82431 0.96536 0.95678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.09 55.49 0.56 -26.33 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.15 10.28 -15.06 -0.15 -6.31 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -15.40 3.40 -169.83 -0.58 -15.98 16 10 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 11 C -0.14 -2.51 6.54 -24.58 -0.16 -2.67 16 12 C -0.11 -1.88 2.98 -88.79 -0.26 -2.15 16 13 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 14 C 0.14 2.08 5.00 -4.04 -0.02 2.06 16 15 N -0.73 -9.65 5.42 -61.42 -0.33 -9.98 16 16 C 0.58 8.66 7.81 -12.57 -0.10 8.56 16 17 O -0.50 -9.11 13.67 5.27 0.07 -9.04 16 18 C -0.25 -3.19 6.31 -102.94 -0.65 -3.84 16 19 C 0.10 0.83 11.50 -16.64 -0.19 0.64 16 20 N -0.46 -3.58 7.20 30.81 0.22 -3.36 16 21 H 0.45 1.71 8.96 -182.84 -1.64 0.07 16 22 N -0.28 -3.13 12.53 34.57 0.43 -2.69 16 23 C 0.17 2.26 7.11 -80.57 -0.57 1.69 16 24 C 0.19 2.51 6.63 -82.96 -0.55 1.96 16 25 C -0.14 -1.50 9.75 -39.10 -0.38 -1.88 16 26 C -0.09 -0.73 10.17 -39.32 -0.40 -1.13 16 27 C -0.17 -1.42 10.11 -39.37 -0.40 -1.82 16 28 C 0.10 1.15 11.17 -17.58 -0.20 0.95 16 29 N -0.41 -5.90 7.06 -9.79 -0.07 -5.97 16 30 C 0.14 2.84 6.66 -2.90 -0.02 2.82 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.11 2.89 5.87 -51.93 -0.31 2.59 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.13 8.01 -51.93 -0.42 0.72 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.39 4.18 7.36 -40.82 -0.30 3.88 16 39 H 0.19 0.84 7.48 -52.49 -0.39 0.45 16 40 H 0.14 1.23 8.04 -52.49 -0.42 0.81 16 41 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 42 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 43 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -36.57 376.14 -10.44 -47.01 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.22 Total: 1.55 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -4.17 Total: 2.09 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: 0.24 Total: -64.32 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.07 Total: -9.04 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.57 -10.44 -47.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028588908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.303 kcal (2) G-P(sol) polarization free energy of solvation -36.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds