Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99664 * 2 1 4 4 H 1.48500 * 109.46948 * 270.00403 * 3 2 1 5 5 H 1.48496 * 109.47225 * 30.00303 * 3 2 1 6 6 H 1.48500 * 109.47093 * 150.00477 * 3 2 1 7 7 C 1.38809 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99706 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00189 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64810 * 359.97438 * 9 7 2 11 11 C 1.54901 * 104.83083 * 155.90654 * 10 9 7 12 12 C 1.55155 * 101.58761 * 37.00814 * 11 10 9 13 13 H 1.09001 * 110.71958 * 83.03315 * 12 11 10 14 14 C 1.52993 * 110.72478 * 206.13799 * 12 11 10 15 15 N 1.46494 * 109.47359 * 182.55850 * 14 12 11 16 16 C 1.34779 * 120.00125 * 179.97438 * 15 14 12 17 17 O 1.21608 * 120.00099 * 359.97438 * 16 15 14 18 18 C 1.47412 * 119.99885 * 180.02562 * 16 15 14 19 19 C 1.41332 * 126.41338 * 359.97438 * 18 16 15 20 20 N 1.30477 * 108.06742 * 180.26543 * 19 18 16 21 21 N 1.39932 * 108.91404 * 359.58280 * 20 19 18 22 22 C 1.40182 * 125.77129 * 180.13816 * 21 20 19 23 23 C 1.39259 * 120.47925 * 0.33456 * 22 21 20 24 24 C 1.38509 * 118.35781 * 179.97438 * 23 22 21 25 25 C 1.38277 * 119.23508 * 0.02562 * 24 23 22 26 26 N 1.31862 * 120.90732 * 0.02562 * 25 24 23 27 27 C 1.31822 * 121.79499 * 359.67857 * 26 25 24 28 28 C 1.34534 * 108.46193 * 0.42603 * 21 20 19 29 29 C 1.47321 * 125.61545 * 180.19555 * 9 7 2 30 30 H 0.96998 * 120.00537 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.36624 * 37.06571 * 10 9 7 32 32 H 1.09001 * 110.45777 * 274.78947 * 10 9 7 33 33 H 1.09004 * 111.00612 * 278.92951 * 11 10 9 34 34 H 1.09006 * 111.04025 * 155.10146 * 11 10 9 35 35 H 1.09001 * 109.47696 * 62.55596 * 14 12 11 36 36 H 1.09008 * 109.46762 * 302.55778 * 14 12 11 37 37 H 0.96995 * 120.00168 * 359.97438 * 15 14 12 38 38 H 1.08002 * 125.96153 * 359.97438 * 19 18 16 39 39 H 1.07993 * 120.82294 * 359.95540 * 23 22 21 40 40 H 1.08003 * 120.38312 * 180.02562 * 24 23 22 41 41 H 1.07991 * 119.54557 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.66453 * 180.30758 * 27 26 25 43 43 H 1.07998 * 126.31533 * 179.77201 * 28 21 20 44 44 H 1.09007 * 110.06328 * 61.68477 * 29 9 7 45 45 H 1.08997 * 109.85249 * 300.42890 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0005 11 6 -0.4019 -3.9323 -0.6112 12 6 0.7786 -4.7525 -0.0271 13 1 0.5456 -5.1007 0.9792 14 6 1.1228 -5.9312 -0.9396 15 7 2.1977 -6.7206 -0.3334 16 6 2.6675 -7.8155 -0.9635 17 8 2.1988 -8.1484 -2.0351 18 6 3.7488 -8.6100 -0.3532 19 6 4.3883 -8.3490 0.8799 20 7 5.2919 -9.2709 1.0701 21 7 5.2684 -10.1590 -0.0109 22 6 6.0920 -11.2828 -0.1663 23 6 7.0349 -11.6072 0.8058 24 6 7.8252 -12.7274 0.6078 25 6 7.6539 -13.4805 -0.5392 26 7 6.7523 -13.1455 -1.4411 27 6 5.9761 -12.0909 -1.2889 28 6 4.3262 -9.7486 -0.8791 29 6 1.9340 -3.7298 0.0030 30 1 -0.4851 0.8400 0.0004 31 1 -0.5997 -1.7589 -0.6147 32 1 -0.5282 -2.4863 1.0186 33 1 -0.3531 -3.8981 -1.6996 34 1 -1.3590 -4.3333 -0.2776 35 1 1.4498 -5.5565 -1.9096 36 1 0.2410 -6.5585 -1.0710 37 1 2.5713 -6.4553 0.5215 38 1 4.1706 -7.5271 1.5458 39 1 7.1475 -11.0003 1.6919 40 1 8.5666 -13.0094 1.3408 41 1 8.2676 -14.3547 -0.6988 42 1 5.2455 -11.8509 -2.0472 43 1 4.0688 -10.2225 -1.8148 44 1 2.5284 -3.8685 0.9062 45 1 2.5620 -3.8538 -0.8792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028590905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = 111.608839 kcal Electronic energy + Delta-G solvation = -27680.725241 eV Core-core repulsion = 23700.945370 eV Total energy + Delta-G solvation = -3979.779871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.21631 -40.51691 -39.28958 -37.57194 -34.76959 -34.52722 -32.92258 -32.50647 -30.89577 -30.25404 -29.56108 -28.19056 -25.79966 -24.78775 -24.53427 -23.56395 -22.32203 -21.48404 -20.52298 -19.92707 -19.66117 -18.87408 -17.58473 -17.00487 -16.78871 -16.38297 -16.10463 -15.87722 -15.50138 -15.18091 -14.75506 -14.59099 -14.51343 -14.13060 -13.86505 -13.73957 -13.55927 -13.26706 -12.79802 -12.75294 -12.50495 -11.78269 -11.72344 -11.60230 -11.49218 -11.28961 -10.95542 -10.80154 -10.43832 -10.36411 -10.25604 -10.14277 -10.02875 -9.94534 -9.76236 -9.67911 -9.51341 -9.02153 -8.71745 -8.65146 -6.83544 -5.65524 -3.07129 0.00961 0.52865 1.40649 1.64473 1.80875 3.15038 3.22473 3.33571 3.39873 3.44807 3.46661 3.74261 3.83737 4.01394 4.27625 4.29093 4.43514 4.48528 4.69845 4.76475 4.83351 4.98458 5.09523 5.26570 5.30446 5.38341 5.41485 5.43869 5.52776 5.70439 5.77170 5.89103 5.93271 6.08130 6.12777 6.34926 6.40517 6.44987 6.55069 6.59106 6.72544 6.90944 6.97506 7.23856 7.51358 7.56122 7.62370 7.85723 8.24971 8.36450 9.22053 9.82882 10.47714 11.38370 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.001802 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.010514 B =15533.815489 C =16336.336360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.134 3.866 15 N -0.718 5.718 16 C 0.592 3.408 17 O -0.549 6.549 18 C -0.271 4.271 19 C 0.097 3.903 20 N -0.291 5.291 21 N -0.313 5.313 22 C 0.106 3.894 23 C -0.072 4.072 24 C -0.147 4.147 25 C 0.089 3.911 26 N -0.456 5.456 27 C 0.089 3.911 28 C 0.125 3.875 29 C 0.140 3.860 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.400 0.600 38 H 0.200 0.800 39 H 0.152 0.848 40 H 0.147 0.853 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.194 0.806 44 H 0.018 0.982 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -26.459 2.120 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.011 3.989 15 N -0.368 5.368 16 C 0.378 3.622 17 O -0.428 6.428 18 C -0.285 4.285 19 C -0.092 4.092 20 N -0.108 5.108 21 N -0.086 5.086 22 C 0.012 3.988 23 C -0.099 4.099 24 C -0.167 4.167 25 C -0.069 4.069 26 N -0.164 5.164 27 C -0.071 4.071 28 C -0.021 4.021 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.234 0.766 38 H 0.217 0.783 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.182 0.818 42 H 0.182 0.818 43 H 0.211 0.789 44 H 0.036 0.964 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.109 -27.445 1.382 30.029 hybrid contribution 0.154 1.888 0.838 2.071 sum 12.264 -25.557 2.221 28.434 Atomic orbital electron populations 1.69793 1.04868 1.24754 1.57666 1.24787 0.95738 0.97717 1.02496 0.86077 0.78498 0.83365 0.77582 1.21600 1.21660 1.20781 1.19075 0.90493 0.82512 1.42992 0.90552 1.44572 1.01950 0.99697 1.86851 1.21926 0.84652 0.92544 0.98187 1.23003 0.95506 0.98565 1.00353 1.22451 0.98316 0.94013 0.98644 0.90553 1.21476 0.89013 0.91507 0.96905 1.45833 1.39053 1.27230 1.24722 1.17103 0.80971 0.80027 0.84100 1.90786 1.60091 1.70296 1.21647 1.20424 1.06892 1.01832 0.99394 1.24343 0.91979 0.97234 0.95657 1.77262 1.23194 1.03142 1.07173 1.45526 1.27015 1.19901 1.16205 1.18712 0.94358 0.87705 0.98069 1.21438 0.92924 0.96954 0.98597 1.22172 1.00149 0.94949 0.99429 1.22941 0.94979 0.99208 0.89727 1.67798 1.04536 1.14435 1.29661 1.22655 0.98738 0.90704 0.95042 1.23051 0.88642 0.94723 0.95716 1.21395 0.93469 0.85959 0.97733 0.93739 0.87541 0.97033 0.91807 0.92111 0.91079 0.91496 0.76565 0.78298 0.83040 0.83495 0.81762 0.81829 0.78870 0.96368 0.95679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.15 10.28 -15.06 -0.15 -6.31 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.60 -15.20 3.40 -169.83 -0.58 -15.78 16 10 C 0.15 3.60 5.89 -2.53 -0.01 3.59 16 11 C -0.13 -2.44 6.53 -24.59 -0.16 -2.60 16 12 C -0.11 -1.83 2.98 -88.79 -0.26 -2.10 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 14 C 0.13 1.90 5.00 -4.05 -0.02 1.88 16 15 N -0.72 -8.81 5.42 -61.39 -0.33 -9.14 16 16 C 0.59 7.86 7.81 -12.52 -0.10 7.76 16 17 O -0.55 -9.13 16.90 5.27 0.09 -9.04 16 18 C -0.27 -2.95 6.13 -105.05 -0.64 -3.60 16 19 C 0.10 0.91 11.50 -16.95 -0.20 0.72 16 20 N -0.29 -3.03 11.85 30.88 0.37 -2.66 16 21 N -0.31 -3.03 3.77 -10.11 -0.04 -3.07 16 22 C 0.11 0.89 6.70 -83.45 -0.56 0.33 16 23 C -0.07 -0.50 9.77 -39.10 -0.38 -0.88 16 24 C -0.15 -0.72 10.10 -39.47 -0.40 -1.12 16 25 C 0.09 0.50 11.18 -17.52 -0.20 0.30 16 26 N -0.46 -3.63 10.35 -13.10 -0.14 -3.76 16 27 C 0.09 0.68 10.62 -17.34 -0.18 0.49 16 28 C 0.13 1.21 10.62 -16.43 -0.17 1.03 16 29 C 0.14 2.77 6.66 -2.90 -0.02 2.75 16 30 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.11 2.87 5.87 -51.93 -0.31 2.56 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 36 H 0.07 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.40 4.01 7.35 -40.82 -0.30 3.71 16 38 H 0.20 1.26 7.50 -52.49 -0.39 0.87 16 39 H 0.15 1.01 7.77 -52.49 -0.41 0.60 16 40 H 0.15 0.29 8.06 -52.48 -0.42 -0.13 16 41 H 0.17 0.44 8.06 -52.49 -0.42 0.01 16 42 H 0.16 0.93 6.74 -52.49 -0.35 0.57 16 43 H 0.19 1.40 7.03 -52.49 -0.37 1.03 16 44 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 45 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -34.98 378.94 -8.81 -43.80 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.87 Total: 1.31 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -3.56 Total: 1.81 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.16 Total: -60.56 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.98 -8.81 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028590905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.406 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds