Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00014 * 2 1 4 4 H 1.48498 * 109.46760 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46937 * 299.99834 * 3 2 1 6 6 H 1.48492 * 109.47175 * 60.00107 * 3 2 1 7 7 C 1.38813 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99728 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00136 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64863 * 0.02562 * 9 7 2 11 11 C 1.54319 * 107.27001 * 178.92107 * 10 9 7 12 12 C 1.55151 * 102.94385 * 337.80706 * 11 10 9 13 13 H 1.08998 * 111.00123 * 277.38964 * 12 11 10 14 14 C 1.53001 * 111.00660 * 153.57829 * 12 11 10 15 15 N 1.46497 * 109.47248 * 174.99994 * 14 12 11 16 16 C 1.34779 * 119.99871 * 179.97438 * 15 14 12 17 17 O 1.21599 * 119.99743 * 359.97438 * 16 15 14 18 18 C 1.47510 * 120.00131 * 179.97438 * 16 15 14 19 19 C 1.36621 * 125.76845 * 180.30430 * 18 16 15 20 20 N 1.35079 * 106.79222 * 180.14672 * 19 18 16 21 21 C 1.40220 * 126.61030 * 179.88798 * 20 19 18 22 22 C 1.38827 * 120.06449 * 179.70712 * 21 20 19 23 23 C 1.38125 * 119.93701 * 180.02562 * 22 21 20 24 24 C 1.38282 * 120.06295 * 359.97438 * 23 22 21 25 25 C 1.38285 * 120.13083 * 0.02562 * 24 23 22 26 26 C 1.38115 * 120.06350 * 359.97438 * 25 24 23 27 27 N 1.40210 * 106.77508 * 359.62376 * 20 19 18 28 28 N 1.28757 * 108.38803 * 0.24203 * 27 20 19 29 29 C 1.47421 * 125.64813 * 179.97438 * 9 7 2 30 30 H 0.97000 * 120.00019 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88178 * 59.50154 * 10 9 7 32 32 H 1.09005 * 109.88100 * 298.34366 * 10 9 7 33 33 H 1.09003 * 110.71687 * 219.43880 * 11 10 9 34 34 H 1.09001 * 110.87114 * 96.24347 * 11 10 9 35 35 H 1.09000 * 109.46845 * 54.99731 * 14 12 11 36 36 H 1.09005 * 109.46960 * 294.99980 * 14 12 11 37 37 H 0.96992 * 120.00231 * 359.97438 * 15 14 12 38 38 H 1.07999 * 126.60353 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.03514 * 0.04737 * 22 21 20 40 40 H 1.07997 * 119.97122 * 179.72289 * 23 22 21 41 41 H 1.07995 * 119.93553 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.96574 * 179.97438 * 25 24 23 43 43 H 1.08011 * 120.03145 * 180.02562 * 26 25 24 44 44 H 1.09007 * 110.36378 * 85.30791 * 29 9 7 45 45 H 1.09006 * 110.36709 * 322.99104 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0278 12 6 0.8523 -4.6560 -0.6117 13 1 0.8577 -4.5965 -1.7000 14 6 1.0370 -6.1008 -0.1434 15 7 2.2064 -6.6833 -0.8063 16 6 2.5647 -7.9561 -0.5451 17 8 1.9174 -8.6207 0.2410 18 6 3.7418 -8.5428 -1.2129 19 6 4.2051 -9.8165 -1.0411 20 7 5.2954 -9.9447 -1.8282 21 6 6.0961 -11.0872 -1.9681 22 6 7.1881 -11.0706 -2.8252 23 6 7.9748 -12.1977 -2.9614 24 6 7.6759 -13.3418 -2.2445 25 6 6.5889 -13.3614 -1.3899 26 6 5.7987 -12.2373 -1.2497 27 7 5.4683 -8.7170 -2.4831 28 7 4.5369 -7.9162 -2.0973 29 6 1.9333 -3.7312 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5570 -2.0520 -0.8843 32 1 -0.5550 -2.0846 0.9011 33 1 -1.2981 -4.2513 -0.6785 34 1 -0.6341 -4.4206 0.9781 35 1 0.1495 -6.6809 -0.3963 36 1 1.1859 -6.1166 0.9363 37 1 2.7229 -6.1530 -1.4330 38 1 3.7824 -10.5743 -0.3981 39 1 7.4224 -10.1771 -3.3849 40 1 8.8217 -12.1868 -3.6314 41 1 8.2927 -14.2218 -2.3522 42 1 6.3577 -14.2565 -0.8316 43 1 4.9500 -12.2531 -0.5818 44 1 2.1659 -4.0423 1.0191 45 1 2.8332 -3.7403 -0.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028655890.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 119.124366 kcal Electronic energy + Delta-G solvation = -27651.267581 eV Core-core repulsion = 23671.813607 eV Total energy + Delta-G solvation = -3979.453973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.77937 -39.91891 -39.35219 -37.58119 -35.14929 -34.62302 -32.49393 -32.00989 -31.22691 -30.39438 -29.62515 -28.23188 -25.76866 -24.77968 -24.46231 -23.46633 -22.41149 -21.87800 -20.62999 -19.94925 -19.87531 -18.96709 -17.37333 -16.76356 -16.57570 -16.52850 -16.11527 -15.65446 -15.45266 -15.16344 -14.70590 -14.59812 -14.46462 -14.15258 -13.87556 -13.65095 -13.46926 -13.00792 -12.73311 -12.40202 -12.29670 -11.98561 -11.84014 -11.74522 -11.66553 -11.59680 -11.35287 -10.85867 -10.77828 -10.47654 -10.17703 -10.02098 -9.89336 -9.87801 -9.79207 -9.72937 -9.61628 -9.11031 -8.91727 -8.56370 -6.78522 -5.67319 -3.00409 -0.05535 0.62410 1.25889 1.45167 1.51343 3.06276 3.08900 3.17307 3.42824 3.48402 3.50860 3.80718 3.88731 4.14642 4.35404 4.38396 4.52412 4.53269 4.63040 4.65913 4.87081 4.95302 5.12653 5.26268 5.28264 5.36693 5.47437 5.58880 5.61933 5.69735 5.72698 5.79758 5.91343 5.93471 6.05927 6.09651 6.31143 6.38674 6.41949 6.56116 6.58199 6.73296 6.96340 7.38234 7.60901 7.64364 7.67419 7.87087 8.12746 8.30336 9.26621 9.86936 10.53036 11.44577 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021151 B = 0.001825 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.467074 B =15340.668605 C =16417.100168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.118 4.118 13 H 0.081 0.919 14 C 0.132 3.868 15 N -0.705 5.705 16 C 0.602 3.398 17 O -0.542 6.542 18 C -0.089 4.089 19 C 0.092 3.908 20 N -0.313 5.313 21 C 0.134 3.866 22 C -0.104 4.104 23 C -0.098 4.098 24 C -0.115 4.115 25 C -0.096 4.096 26 C -0.125 4.125 27 N -0.055 5.055 28 N -0.192 5.192 29 C 0.141 3.859 30 H 0.251 0.749 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.208 0.792 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.020 0.980 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -30.234 -4.705 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.099 0.901 14 C 0.009 3.991 15 N -0.355 5.355 16 C 0.385 3.615 17 O -0.419 6.419 18 C -0.227 4.227 19 C -0.062 4.062 20 N -0.092 5.092 21 C 0.043 3.957 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.134 4.134 25 C -0.114 4.114 26 C -0.146 4.146 27 N -0.033 5.033 28 N -0.066 5.066 29 C 0.015 3.985 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.225 0.775 39 H 0.160 0.840 40 H 0.155 0.845 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.037 0.963 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.577 -29.590 -5.116 32.556 hybrid contribution 0.158 0.572 0.378 0.704 sum 12.735 -29.018 -4.738 32.042 Atomic orbital electron populations 1.69977 1.04854 1.24836 1.57351 1.24806 0.95736 0.97661 1.02413 0.86044 0.78734 0.83818 0.77189 1.20518 1.21799 1.21804 1.19119 0.90478 0.82442 1.43401 0.90411 1.44488 1.01735 0.99892 1.87144 1.21147 0.84350 0.88158 1.01107 1.22855 0.95361 0.99403 0.99688 1.22620 0.98656 0.91846 1.00692 0.90058 1.21496 0.86795 0.93363 0.97428 1.45886 1.31091 1.12496 1.46061 1.16663 0.81800 0.82048 0.80963 1.90810 1.53854 1.61309 1.35888 1.21574 1.02590 0.93224 1.05278 1.23367 0.88107 0.99222 0.95481 1.47663 1.19671 1.11597 1.30248 1.17643 0.93351 0.83946 1.00777 1.21024 0.93298 1.00320 0.97776 1.21154 0.99279 0.92076 0.99135 1.21385 0.97291 0.98595 0.96119 1.21061 0.94489 0.97644 0.98238 1.20996 1.01637 0.91654 1.00299 1.82100 1.18269 0.85939 1.17038 1.74705 1.00442 1.23734 1.07697 1.21592 0.94073 0.86084 0.96773 0.93862 0.93551 0.93893 0.91971 0.92166 0.91270 0.90946 0.75374 0.77541 0.83951 0.84511 0.84950 0.84471 0.84627 0.96284 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 10.31 55.49 0.57 -26.88 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -15.67 3.39 -170.09 -0.58 -16.25 16 10 C 0.18 4.32 5.37 -3.07 -0.02 4.31 16 11 C -0.13 -2.46 6.42 -24.90 -0.16 -2.62 16 12 C -0.12 -2.01 3.05 -88.49 -0.27 -2.27 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 14 C 0.13 1.93 5.13 -4.04 -0.02 1.91 16 15 N -0.71 -9.84 5.50 -61.36 -0.34 -10.18 16 16 C 0.60 8.55 7.82 -12.48 -0.10 8.45 16 17 O -0.54 -8.75 16.86 5.28 0.09 -8.66 16 18 C -0.09 -1.12 6.99 -83.54 -0.58 -1.71 16 19 C 0.09 0.91 10.60 -16.71 -0.18 0.73 16 20 N -0.31 -3.18 3.82 -10.42 -0.04 -3.22 16 21 C 0.13 1.06 6.69 -83.58 -0.56 0.50 16 22 C -0.10 -0.72 9.68 -39.41 -0.38 -1.10 16 23 C -0.10 -0.45 10.04 -39.61 -0.40 -0.85 16 24 C -0.12 -0.43 10.04 -39.55 -0.40 -0.83 16 25 C -0.10 -0.38 10.04 -39.61 -0.40 -0.78 16 26 C -0.13 -0.69 9.47 -39.41 -0.37 -1.06 16 27 N -0.05 -0.69 13.12 60.35 0.79 0.10 16 28 N -0.19 -2.60 12.03 32.85 0.40 -2.21 16 29 C 0.14 2.92 6.65 -2.55 -0.02 2.90 16 30 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 32 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.11 7.96 -51.93 -0.41 0.70 16 37 H 0.41 5.51 8.16 -40.82 -0.33 5.18 16 38 H 0.21 1.34 7.13 -52.49 -0.37 0.97 16 39 H 0.14 1.01 7.73 -52.48 -0.41 0.60 16 40 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 41 H 0.13 0.19 8.06 -52.49 -0.42 -0.23 16 42 H 0.14 0.23 8.06 -52.49 -0.42 -0.20 16 43 H 0.14 0.51 6.82 -52.48 -0.36 0.15 16 44 H 0.02 0.40 7.91 -51.93 -0.41 -0.01 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 381.18 15.07 5.74 5.74 Total: -1.00 -34.53 381.18 -8.48 -43.00 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.99 Total: 0.46 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -4.10 Total: 0.62 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.80 Total: -58.63 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.53 -8.48 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028655890.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.128 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds