Wall clock time and date at job start Sat Apr 11 2020 06:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00567 * 2 1 4 4 H 1.48498 * 109.47217 * 264.67285 * 3 2 1 5 5 H 1.48500 * 109.46860 * 24.66865 * 3 2 1 6 6 H 1.48499 * 109.47705 * 144.66691 * 3 2 1 7 7 C 1.38813 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00335 * 336.23890 * 7 2 1 9 9 N 1.36947 * 120.00109 * 156.24586 * 7 2 1 10 10 C 1.47420 * 125.64747 * 162.05419 * 9 7 2 11 11 C 1.54912 * 104.83227 * 155.90455 * 10 9 7 12 12 C 1.55161 * 101.58221 * 37.00292 * 11 10 9 13 13 H 1.08997 * 110.71485 * 83.03990 * 12 11 10 14 14 C 1.52995 * 110.72318 * 206.13782 * 12 11 10 15 15 N 1.46495 * 109.47202 * 182.55927 * 14 12 11 16 16 C 1.34784 * 120.00037 * 179.97438 * 15 14 12 17 17 O 1.21594 * 119.99557 * 0.02562 * 16 15 14 18 18 C 1.47506 * 120.00310 * 180.02562 * 16 15 14 19 19 C 1.36612 * 125.77190 * 179.71878 * 18 16 15 20 20 N 1.35071 * 106.79949 * 179.83975 * 19 18 16 21 21 C 1.40230 * 126.61643 * 180.14809 * 20 19 18 22 22 C 1.38823 * 120.06438 * 0.02562 * 21 20 19 23 23 C 1.38125 * 119.93357 * 179.74247 * 22 21 20 24 24 C 1.38280 * 120.06426 * 0.52981 * 23 22 21 25 25 C 1.38277 * 120.13040 * 359.72198 * 24 23 22 26 26 C 1.38124 * 120.06790 * 0.02562 * 25 24 23 27 27 N 1.40216 * 106.77255 * 0.41638 * 20 19 18 28 28 N 1.28751 * 108.38287 * 359.73478 * 27 20 19 29 29 C 1.47313 * 125.61285 * 342.26983 * 9 7 2 30 30 H 0.96999 * 119.99518 * 359.97438 * 1 2 3 31 31 H 1.08991 * 110.37150 * 37.06214 * 10 9 7 32 32 H 1.09001 * 110.45568 * 274.78204 * 10 9 7 33 33 H 1.09002 * 111.00252 * 278.93435 * 11 10 9 34 34 H 1.08997 * 111.04248 * 155.09462 * 11 10 9 35 35 H 1.09000 * 109.47321 * 62.55682 * 14 12 11 36 36 H 1.09007 * 109.46988 * 302.56138 * 14 12 11 37 37 H 0.96998 * 120.00234 * 359.72705 * 15 14 12 38 38 H 1.08002 * 126.59932 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.03484 * 359.97438 * 22 21 20 40 40 H 1.07998 * 119.97035 * 180.27028 * 23 22 21 41 41 H 1.08000 * 119.93380 * 179.74490 * 24 23 22 42 42 H 1.07999 * 119.96810 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.03475 * 180.02562 * 26 25 24 44 44 H 1.09001 * 110.06480 * 61.67973 * 29 9 7 45 45 H 1.09007 * 109.85312 * 300.42592 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6104 1.9813 -1.3940 5 1 1.3960 2.6825 0.5844 6 1 3.4870 1.4752 0.8097 7 6 2.0101 -1.2022 -0.0005 8 1 1.5388 -2.0980 0.3759 9 7 3.2926 -1.2523 -0.4783 10 6 4.2677 -2.3252 -0.2111 11 6 5.2608 -2.2632 -1.3983 12 6 5.3571 -0.7342 -1.6444 13 1 6.0753 -0.2785 -0.9628 14 6 5.7332 -0.4425 -3.0984 15 7 5.8762 1.0034 -3.2851 16 6 6.2065 1.4973 -4.4950 17 8 6.3854 0.7426 -5.4314 18 6 6.3511 2.9532 -4.6829 19 6 6.6856 3.5783 -5.8507 20 7 6.7057 4.9039 -5.5920 21 6 6.9982 5.9294 -6.5026 22 6 7.3066 5.6220 -7.8207 23 6 7.5891 6.6346 -8.7167 24 6 7.5756 7.9528 -8.2991 25 6 7.2738 8.2617 -6.9855 26 6 6.9854 7.2537 -6.0862 27 7 6.3839 5.0564 -4.2358 28 7 6.1816 3.8887 -3.7327 29 6 3.9269 -0.2404 -1.3407 30 1 -0.4849 0.8401 0.0004 31 1 3.7683 -3.2937 -0.1844 32 1 4.7882 -2.1415 0.7288 33 1 4.8575 -2.7749 -2.2722 34 1 6.2304 -2.6758 -1.1195 35 1 4.9515 -0.8186 -3.7584 36 1 6.6766 -0.9346 -3.3354 37 1 5.7296 1.6057 -2.5390 38 1 6.8919 3.1040 -6.7988 39 1 7.3221 4.5923 -8.1463 40 1 7.8248 6.3964 -9.7433 41 1 7.8008 8.7426 -9.0005 42 1 7.2636 9.2921 -6.6623 43 1 6.7494 7.4957 -5.0605 44 1 3.9677 0.7186 -0.8241 45 1 3.3644 -0.1400 -2.2690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028655891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:46 Heat of formation + Delta-G solvation = 127.179750 kcal Electronic energy + Delta-G solvation = -28200.677494 eV Core-core repulsion = 24221.572829 eV Total energy + Delta-G solvation = -3979.104666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.76137 -39.91350 -39.40197 -37.92218 -35.13711 -34.67960 -32.54717 -31.99973 -31.24879 -30.61304 -29.99711 -28.63665 -26.03878 -24.74889 -24.42415 -23.52926 -22.46730 -21.86691 -20.71052 -20.24645 -20.07551 -19.01507 -17.38031 -16.88970 -16.54857 -16.52485 -16.25175 -15.94539 -15.61571 -15.29345 -14.93464 -14.62318 -14.44719 -14.13051 -13.82790 -13.65526 -13.46456 -13.23081 -12.76925 -12.70976 -12.43416 -12.37971 -11.94703 -11.81366 -11.64799 -11.60318 -11.51302 -11.26213 -10.92605 -10.71122 -10.52115 -10.21041 -10.12920 -9.87526 -9.82552 -9.70605 -9.29502 -9.10824 -8.93924 -8.57826 -7.02540 -5.91181 -3.19415 -0.03302 0.64684 1.27714 1.46691 1.53611 3.05446 3.08705 3.17772 3.40774 3.52427 3.55509 3.82706 3.89610 4.16736 4.36645 4.39665 4.54271 4.59319 4.63703 4.67858 4.84163 4.90119 4.97561 5.06179 5.10595 5.27215 5.30481 5.37479 5.48617 5.64078 5.66695 5.72194 5.81728 5.83135 5.88437 5.93715 6.05934 6.11499 6.30159 6.33430 6.37884 6.49776 6.63191 6.78117 6.82133 7.36448 7.63761 7.74989 8.10020 8.34981 8.87315 9.73307 10.22126 11.25255 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002393 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.796603 B =11696.923509 C =12927.798393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.020 3.980 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.305 1.305 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.120 4.120 12 C -0.117 4.117 13 H 0.082 0.918 14 C 0.132 3.868 15 N -0.709 5.709 16 C 0.604 3.396 17 O -0.540 6.540 18 C -0.090 4.090 19 C 0.093 3.907 20 N -0.313 5.313 21 C 0.134 3.866 22 C -0.125 4.125 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.098 4.098 26 C -0.104 4.104 27 N -0.054 5.054 28 N -0.193 5.193 29 C 0.124 3.876 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.209 0.791 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.025 0.975 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.118 13.719 -18.251 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.178 4.178 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.233 1.233 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.110 0.890 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.159 4.159 12 C -0.137 4.137 13 H 0.100 0.900 14 C 0.009 3.991 15 N -0.359 5.359 16 C 0.388 3.612 17 O -0.417 6.417 18 C -0.228 4.228 19 C -0.060 4.060 20 N -0.092 5.092 21 C 0.043 3.957 22 C -0.146 4.146 23 C -0.114 4.114 24 C -0.134 4.134 25 C -0.116 4.116 26 C -0.124 4.124 27 N -0.033 5.033 28 N -0.067 5.067 29 C -0.001 4.001 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.225 0.775 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.043 0.957 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.752 14.170 -17.671 30.054 hybrid contribution 0.432 0.823 -0.352 0.994 sum 20.184 14.993 -18.024 30.936 Atomic orbital electron populations 1.69863 1.05553 1.26549 1.53135 1.24961 0.95160 0.97430 1.00273 0.86919 0.78859 0.84625 0.77783 1.21182 1.23284 1.20618 1.18660 0.85221 0.95601 1.37464 0.88966 1.44859 1.10871 1.22153 1.55827 1.21608 0.90154 0.93072 0.94466 1.22727 0.99499 0.93706 0.99997 1.22471 0.98407 0.98077 0.94704 0.90008 1.21507 1.01867 0.79048 0.96662 1.45867 1.69071 1.09397 1.11528 1.16636 0.77068 0.84202 0.83314 1.90804 1.52017 1.58176 1.40661 1.21545 1.14566 0.95835 0.90826 1.23350 0.98126 0.82943 1.01628 1.47673 1.46306 1.05042 1.10133 1.17652 1.03379 0.86709 0.87978 1.20994 1.01589 1.01209 0.90780 1.21061 0.98565 0.92143 0.99662 1.21382 0.98931 0.96835 0.96235 1.21152 0.98027 0.99423 0.93029 1.21028 0.99812 0.89934 1.01638 1.82104 1.19973 1.15503 0.85671 1.74711 1.10017 0.96185 1.25749 1.21772 0.90670 0.92865 0.94812 0.92765 0.93165 0.95787 0.90849 0.91200 0.90562 0.90914 0.75436 0.77475 0.84625 0.84457 0.84939 0.84503 0.83960 0.95739 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.67 13.97 55.49 0.78 -27.90 16 2 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 3 Si 0.89 23.53 24.38 -169.99 -4.14 19.38 16 4 H -0.28 -7.34 6.83 56.52 0.39 -6.95 16 5 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 6 H -0.28 -7.27 6.87 56.52 0.39 -6.88 16 7 C -0.24 -7.03 10.56 -15.05 -0.16 -7.19 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.38 16 9 N -0.61 -14.97 3.22 -169.84 -0.55 -15.52 16 10 C 0.13 2.58 7.23 -2.53 -0.02 2.56 16 11 C -0.12 -1.84 6.54 -24.58 -0.16 -2.00 16 12 C -0.12 -1.91 2.98 -88.79 -0.26 -2.17 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.13 1.95 5.00 -4.05 -0.02 1.93 16 15 N -0.71 -10.76 5.43 -61.36 -0.33 -11.09 16 16 C 0.60 9.21 7.82 -12.48 -0.10 9.11 16 17 O -0.54 -9.02 16.86 5.28 0.09 -8.94 16 18 C -0.09 -1.25 6.99 -83.54 -0.58 -1.83 16 19 C 0.09 1.01 10.60 -16.71 -0.18 0.83 16 20 N -0.31 -3.48 3.82 -10.43 -0.04 -3.52 16 21 C 0.13 1.16 6.70 -83.58 -0.56 0.60 16 22 C -0.12 -0.77 9.47 -39.41 -0.37 -1.15 16 23 C -0.10 -0.44 10.04 -39.61 -0.40 -0.83 16 24 C -0.12 -0.50 10.04 -39.55 -0.40 -0.90 16 25 C -0.10 -0.52 10.04 -39.61 -0.40 -0.92 16 26 C -0.10 -0.80 9.68 -39.40 -0.38 -1.18 16 27 N -0.05 -0.74 13.12 60.35 0.79 0.05 16 28 N -0.19 -2.91 12.03 32.85 0.40 -2.52 16 29 C 0.12 2.71 4.54 -2.91 -0.01 2.69 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.21 8.00 -51.93 -0.42 0.79 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.41 6.25 8.08 -40.82 -0.33 5.92 16 38 H 0.21 1.50 7.13 -52.49 -0.37 1.13 16 39 H 0.14 0.59 6.81 -52.49 -0.36 0.23 16 40 H 0.14 0.30 8.06 -52.49 -0.42 -0.13 16 41 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 42 H 0.14 0.43 8.06 -52.49 -0.42 0.00 16 43 H 0.14 1.13 7.73 -52.49 -0.41 0.73 16 44 H 0.03 0.59 3.55 -51.93 -0.18 0.41 16 45 H 0.04 1.00 7.73 -51.93 -0.40 0.59 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -36.13 375.64 -7.30 -43.44 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.86 Total: 0.87 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -4.10 Total: 0.08 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 1.04 Total: -60.49 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.14 Total: 19.38 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.13 -7.30 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028655891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.616 kcal (2) G-P(sol) polarization free energy of solvation -36.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds