Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00567 * 2 1 4 4 H 1.48498 * 109.47217 * 264.67285 * 3 2 1 5 5 H 1.48500 * 109.46860 * 24.66865 * 3 2 1 6 6 H 1.48499 * 109.47705 * 144.66691 * 3 2 1 7 7 C 1.38813 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00335 * 336.23890 * 7 2 1 9 9 N 1.36947 * 120.00109 * 156.24586 * 7 2 1 10 10 C 1.47420 * 125.64747 * 162.05419 * 9 7 2 11 11 C 1.54912 * 104.83227 * 155.90455 * 10 9 7 12 12 C 1.55161 * 101.58221 * 37.00292 * 11 10 9 13 13 H 1.08997 * 110.71485 * 83.03990 * 12 11 10 14 14 C 1.52995 * 110.72318 * 206.13782 * 12 11 10 15 15 N 1.46495 * 109.47202 * 182.55927 * 14 12 11 16 16 C 1.34784 * 120.00037 * 179.97438 * 15 14 12 17 17 O 1.21594 * 119.99557 * 0.02562 * 16 15 14 18 18 C 1.47506 * 120.00310 * 180.02562 * 16 15 14 19 19 C 1.36612 * 125.77190 * 179.71878 * 18 16 15 20 20 N 1.35071 * 106.79949 * 179.83975 * 19 18 16 21 21 C 1.40230 * 126.61643 * 180.14809 * 20 19 18 22 22 C 1.38823 * 120.06438 * 0.02562 * 21 20 19 23 23 C 1.38125 * 119.93357 * 179.74247 * 22 21 20 24 24 C 1.38280 * 120.06426 * 0.52981 * 23 22 21 25 25 C 1.38277 * 120.13040 * 359.72198 * 24 23 22 26 26 C 1.38124 * 120.06790 * 0.02562 * 25 24 23 27 27 N 1.40216 * 106.77255 * 0.41638 * 20 19 18 28 28 N 1.28751 * 108.38287 * 359.73478 * 27 20 19 29 29 C 1.47313 * 125.61285 * 342.26983 * 9 7 2 30 30 H 0.96999 * 119.99518 * 359.97438 * 1 2 3 31 31 H 1.08991 * 110.37150 * 37.06214 * 10 9 7 32 32 H 1.09001 * 110.45568 * 274.78204 * 10 9 7 33 33 H 1.09002 * 111.00252 * 278.93435 * 11 10 9 34 34 H 1.08997 * 111.04248 * 155.09462 * 11 10 9 35 35 H 1.09000 * 109.47321 * 62.55682 * 14 12 11 36 36 H 1.09007 * 109.46988 * 302.56138 * 14 12 11 37 37 H 0.96998 * 120.00234 * 359.72705 * 15 14 12 38 38 H 1.08002 * 126.59932 * 359.97438 * 19 18 16 39 39 H 1.08001 * 120.03484 * 359.97438 * 22 21 20 40 40 H 1.07998 * 119.97035 * 180.27028 * 23 22 21 41 41 H 1.08000 * 119.93380 * 179.74490 * 24 23 22 42 42 H 1.07999 * 119.96810 * 180.02562 * 25 24 23 43 43 H 1.07999 * 120.03475 * 180.02562 * 26 25 24 44 44 H 1.09001 * 110.06480 * 61.67973 * 29 9 7 45 45 H 1.09007 * 109.85312 * 300.42592 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6104 1.9813 -1.3940 5 1 1.3960 2.6825 0.5844 6 1 3.4870 1.4752 0.8097 7 6 2.0101 -1.2022 -0.0005 8 1 1.5388 -2.0980 0.3759 9 7 3.2926 -1.2523 -0.4783 10 6 4.2677 -2.3252 -0.2111 11 6 5.2608 -2.2632 -1.3983 12 6 5.3571 -0.7342 -1.6444 13 1 6.0753 -0.2785 -0.9628 14 6 5.7332 -0.4425 -3.0984 15 7 5.8762 1.0034 -3.2851 16 6 6.2065 1.4973 -4.4950 17 8 6.3854 0.7426 -5.4314 18 6 6.3511 2.9532 -4.6829 19 6 6.6856 3.5783 -5.8507 20 7 6.7057 4.9039 -5.5920 21 6 6.9982 5.9294 -6.5026 22 6 7.3066 5.6220 -7.8207 23 6 7.5891 6.6346 -8.7167 24 6 7.5756 7.9528 -8.2991 25 6 7.2738 8.2617 -6.9855 26 6 6.9854 7.2537 -6.0862 27 7 6.3839 5.0564 -4.2358 28 7 6.1816 3.8887 -3.7327 29 6 3.9269 -0.2404 -1.3407 30 1 -0.4849 0.8401 0.0004 31 1 3.7683 -3.2937 -0.1844 32 1 4.7882 -2.1415 0.7288 33 1 4.8575 -2.7749 -2.2722 34 1 6.2304 -2.6758 -1.1195 35 1 4.9515 -0.8186 -3.7584 36 1 6.6766 -0.9346 -3.3354 37 1 5.7296 1.6057 -2.5390 38 1 6.8919 3.1040 -6.7988 39 1 7.3221 4.5923 -8.1463 40 1 7.8248 6.3964 -9.7433 41 1 7.8008 8.7426 -9.0005 42 1 7.2636 9.2921 -6.6623 43 1 6.7494 7.4957 -5.0605 44 1 3.9677 0.7186 -0.8241 45 1 3.3644 -0.1400 -2.2690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028655891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = 101.207863 kcal Electronic energy + Delta-G solvation = -28201.803720 eV Core-core repulsion = 24221.572829 eV Total energy + Delta-G solvation = -3980.230891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.65592 -40.81830 -40.18939 -39.43000 -36.17584 -35.76962 -34.49513 -32.76034 -32.24570 -31.78877 -30.88828 -30.10082 -27.56989 -25.92401 -25.38561 -24.68114 -23.32869 -22.54913 -22.10290 -21.72602 -21.19491 -19.86857 -19.00500 -18.12996 -17.84817 -17.43065 -17.28838 -17.02349 -16.42513 -16.33218 -15.98810 -15.81027 -15.47599 -15.17314 -15.03371 -14.90918 -14.54040 -14.40769 -14.22046 -14.11323 -13.57622 -13.46560 -13.24346 -13.04358 -12.92102 -12.66211 -12.49909 -12.43507 -12.39443 -12.15167 -12.08404 -11.85148 -11.59004 -11.36433 -11.22490 -10.79315 -10.78010 -10.19236 -10.12038 -9.62417 -9.08776 -8.22451 -5.45429 -0.69996 0.23977 0.37493 0.67987 0.78451 1.26677 1.32889 1.42314 1.96522 2.07843 2.37019 2.66137 2.94390 2.99041 3.15004 3.29929 3.57802 3.64079 3.72059 3.81330 3.82272 3.87380 3.96617 4.15323 4.27896 4.33098 4.37415 4.46909 4.47716 4.54768 4.58266 4.65935 4.77966 4.87063 4.93501 5.04061 5.11213 5.16426 5.18918 5.24883 5.29088 5.41177 5.43009 5.45692 5.67148 5.85335 6.07008 6.24235 6.64037 6.74496 6.95445 7.52282 8.09259 8.97810 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002393 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.796603 B =11696.923509 C =12927.798393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.039 4.039 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.312 1.312 6 H -0.269 1.269 7 C -0.232 4.232 8 H 0.064 0.936 9 N -0.630 5.630 10 C 0.121 3.879 11 C -0.104 4.104 12 C -0.102 4.102 13 H 0.102 0.898 14 C 0.138 3.862 15 N -0.713 5.713 16 C 0.607 3.393 17 O -0.558 6.558 18 C -0.114 4.114 19 C 0.109 3.891 20 N -0.301 5.301 21 C 0.095 3.905 22 C -0.124 4.124 23 C -0.095 4.095 24 C -0.106 4.106 25 C -0.102 4.102 26 C -0.121 4.121 27 N -0.082 5.082 28 N -0.221 5.221 29 C 0.118 3.882 30 H 0.261 0.739 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.409 0.591 38 H 0.244 0.756 39 H 0.154 0.846 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.157 0.843 43 H 0.128 0.872 44 H 0.011 0.989 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.564 14.575 -20.944 34.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.234 4.234 3 Si 0.779 3.221 4 H -0.206 1.206 5 H -0.241 1.241 6 H -0.195 1.195 7 C -0.361 4.361 8 H 0.082 0.918 9 N -0.357 5.357 10 C -0.003 4.003 11 C -0.142 4.142 12 C -0.121 4.121 13 H 0.120 0.880 14 C 0.016 3.984 15 N -0.362 5.362 16 C 0.392 3.608 17 O -0.436 6.436 18 C -0.254 4.254 19 C -0.046 4.046 20 N -0.078 5.078 21 C 0.005 3.995 22 C -0.144 4.144 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.141 4.141 27 N -0.060 5.060 28 N -0.094 5.094 29 C -0.007 4.007 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.244 0.756 38 H 0.260 0.740 39 H 0.172 0.828 40 H 0.186 0.814 41 H 0.181 0.819 42 H 0.174 0.826 43 H 0.146 0.854 44 H 0.028 0.972 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 23.253 15.038 -20.358 34.370 hybrid contribution -0.607 0.579 0.349 0.909 sum 22.646 15.618 -20.009 34.016 Atomic orbital electron populations 1.69978 1.07056 1.27085 1.55997 1.25569 0.95790 1.00546 1.01460 0.85915 0.77601 0.80526 0.78022 1.20565 1.24102 1.19532 1.18664 0.87281 0.94468 1.35646 0.91829 1.45038 1.10458 1.24125 1.56122 1.21903 0.90122 0.91288 0.96965 1.22705 1.00355 0.92986 0.98177 1.22405 0.94821 0.98742 0.96141 0.88000 1.21463 1.02694 0.79107 0.95178 1.45926 1.69072 1.09586 1.11649 1.16745 0.76447 0.84681 0.82953 1.90781 1.53041 1.58761 1.41018 1.21540 1.16649 0.95243 0.91925 1.23849 0.96178 0.82633 1.01944 1.47819 1.44666 1.05806 1.09554 1.18073 1.06283 0.86441 0.88725 1.21317 1.00597 1.02809 0.89706 1.21493 0.97296 0.91783 1.00719 1.21822 0.96724 0.97774 0.96069 1.21440 0.97479 0.99795 0.93292 1.21123 1.00779 0.90518 1.01700 1.82020 1.21395 1.15232 0.87373 1.74662 1.11106 0.96754 1.26868 1.21846 0.93854 0.91949 0.93001 0.92990 0.93326 0.94692 0.90369 0.86703 0.91895 0.88196 0.75589 0.74012 0.82823 0.81438 0.81947 0.82569 0.85416 0.97166 0.96164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.60 13.97 21.65 0.30 -62.30 16 2 C -0.04 -2.41 5.43 84.86 0.46 -1.95 16 3 Si 0.95 50.21 24.38 68.60 1.67 51.88 16 4 H -0.28 -14.29 6.83 99.48 0.68 -13.61 16 5 H -0.31 -16.71 7.11 99.48 0.71 -16.01 16 6 H -0.27 -13.61 6.87 99.48 0.68 -12.92 16 7 C -0.23 -13.79 10.56 84.03 0.89 -12.90 16 8 H 0.06 4.05 8.06 -2.91 -0.02 4.02 16 9 N -0.63 -30.83 3.22 -691.25 -2.22 -33.06 16 10 C 0.12 4.50 7.23 86.86 0.63 5.13 16 11 C -0.10 -2.79 6.54 31.99 0.21 -2.58 16 12 C -0.10 -3.04 2.98 -9.61 -0.03 -3.07 16 13 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 14 C 0.14 3.77 5.00 86.38 0.43 4.20 16 15 N -0.71 -20.84 5.43 -466.30 -2.53 -23.37 16 16 C 0.61 17.97 7.82 86.69 0.68 18.64 16 17 O -0.56 -17.85 16.86 -4.01 -0.07 -17.92 16 18 C -0.11 -3.14 6.99 40.81 0.29 -2.85 16 19 C 0.11 2.23 10.60 83.81 0.89 3.12 16 20 N -0.30 -6.56 3.82 -186.90 -0.71 -7.28 16 21 C 0.10 1.55 6.70 38.08 0.25 1.81 16 22 C -0.12 -1.21 9.47 22.38 0.21 -0.99 16 23 C -0.09 -0.51 10.04 22.25 0.22 -0.28 16 24 C -0.11 -0.54 10.04 22.29 0.22 -0.31 16 25 C -0.10 -0.87 10.04 22.25 0.22 -0.65 16 26 C -0.12 -1.82 9.68 22.38 0.22 -1.60 16 27 N -0.08 -2.32 13.12 37.02 0.49 -1.84 16 28 N -0.22 -6.79 12.03 -49.99 -0.60 -7.40 16 29 C 0.12 5.09 4.54 86.67 0.39 5.48 16 30 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 2.07 8.05 -2.39 -0.02 2.05 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.90 8.00 -2.39 -0.02 1.88 16 36 H 0.10 2.24 8.14 -2.38 -0.02 2.23 16 37 H 0.41 12.20 8.08 -92.71 -0.75 11.45 16 38 H 0.24 2.88 7.13 -2.91 -0.02 2.86 16 39 H 0.15 0.83 6.81 -2.91 -0.02 0.81 16 40 H 0.17 -0.10 8.06 -2.91 -0.02 -0.13 16 41 H 0.16 -0.13 8.06 -2.91 -0.02 -0.15 16 42 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.13 2.19 7.73 -2.91 -0.02 2.16 16 44 H 0.01 0.50 3.55 -2.39 -0.01 0.49 16 45 H 0.02 0.96 7.73 -2.38 -0.02 0.94 16 Total: -1.00 -82.74 375.64 2.74 -80.00 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.23 Total: 10.09 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 6.19 Total: 11.18 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -5.28 Total: -135.23 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.07 Total: -17.92 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 1.67 Total: 51.88 kcal Total: -82.74 2.74 -80.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028655891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.206 kcal (2) G-P(sol) polarization free energy of solvation -82.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds