Wall clock time and date at job start Sat Apr 11 2020 06:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99481 * 2 1 4 4 H 1.48499 * 109.46921 * 269.99437 * 3 2 1 5 5 H 1.48491 * 109.47345 * 29.99708 * 3 2 1 6 6 H 1.48503 * 109.46612 * 150.00017 * 3 2 1 7 7 C 1.38802 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64637 * 359.97438 * 9 7 2 11 11 C 1.54914 * 104.83011 * 155.90144 * 10 9 7 12 12 C 1.55158 * 101.58024 * 37.00996 * 11 10 9 13 13 H 1.08997 * 110.71879 * 83.03960 * 12 11 10 14 14 C 1.52997 * 110.71889 * 206.13064 * 12 11 10 15 15 N 1.46506 * 109.47289 * 182.55931 * 14 12 11 16 16 C 1.34774 * 120.00072 * 180.02562 * 15 14 12 17 17 O 1.21546 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.47866 * 119.99657 * 180.02562 * 16 15 14 19 19 C 1.39652 * 120.08856 * 359.72633 * 18 16 15 20 20 C 1.38020 * 120.09722 * 179.72173 * 19 18 16 21 21 C 1.38159 * 120.26799 * 0.55135 * 20 19 18 22 22 C 1.39409 * 120.17737 * 359.72856 * 21 20 19 23 23 C 1.48414 * 120.05261 * 180.02562 * 22 21 20 24 24 N 1.33972 * 125.65163 * 179.66833 * 23 22 21 25 25 C 1.30685 * 109.78104 * 179.81651 * 24 23 22 26 26 N 1.34517 * 108.29110 * 0.44373 * 25 24 23 27 27 H 0.97000 * 126.74160 * 179.73415 * 26 25 24 28 28 N 1.31492 * 125.65039 * 359.97325 * 23 22 21 29 29 C 1.39098 * 119.89573 * 359.97438 * 22 21 20 30 30 C 1.47320 * 125.61599 * 180.19390 * 9 7 2 31 31 H 0.97005 * 120.00182 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.36749 * 37.06850 * 10 9 7 33 33 H 1.09001 * 110.45864 * 274.78812 * 10 9 7 34 34 H 1.09001 * 111.00531 * 278.93476 * 11 10 9 35 35 H 1.09001 * 111.03720 * 155.09842 * 11 10 9 36 36 H 1.09001 * 109.47289 * 62.55803 * 14 12 11 37 37 H 1.09004 * 109.47261 * 302.56059 * 14 12 11 38 38 H 0.97001 * 119.99251 * 0.02562 * 15 14 12 39 39 H 1.08005 * 119.94942 * 359.97438 * 19 18 16 40 40 H 1.07994 * 119.86215 * 180.29976 * 20 19 18 41 41 H 1.08006 * 119.91274 * 179.69457 * 21 20 19 42 42 H 1.08000 * 125.85051 * 180.16759 * 25 24 23 43 43 H 1.08004 * 120.13310 * 179.97438 * 29 22 21 44 44 H 1.08991 * 110.06396 * 61.68337 * 30 9 7 45 45 H 1.09005 * 109.84901 * 300.41965 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4015 -3.9325 -0.6109 12 6 0.7786 -4.7524 -0.0255 13 1 0.5447 -5.1003 0.9807 14 6 1.1234 -5.9316 -0.9373 15 7 2.1979 -6.7208 -0.3298 16 6 2.6688 -7.8154 -0.9596 17 8 2.2024 -8.1476 -2.0317 18 6 3.7529 -8.6121 -0.3461 19 6 4.2941 -8.2289 0.8829 20 6 5.3020 -8.9757 1.4584 21 6 5.7891 -10.0988 0.8180 22 6 5.2612 -10.4884 -0.4121 23 6 5.7861 -11.6957 -1.0973 24 7 5.3589 -12.1736 -2.2738 25 6 6.0371 -13.2455 -2.5882 26 7 6.9206 -13.4901 -1.6038 27 1 7.5553 -14.2224 -1.5625 28 7 6.7436 -12.4767 -0.6477 29 6 4.2409 -9.7445 -0.9956 30 6 1.9339 -3.7298 0.0051 31 1 -0.4851 0.8401 -0.0004 32 1 -0.5992 -1.7591 -0.6154 33 1 -0.5290 -2.4858 1.0182 34 1 -0.3518 -3.8987 -1.6993 35 1 -1.3589 -4.3333 -0.2779 36 1 1.4511 -5.5573 -1.9071 37 1 0.2417 -6.5589 -1.0691 38 1 2.5703 -6.4554 0.5256 39 1 3.9204 -7.3491 1.3857 40 1 5.7144 -8.6786 2.4112 41 1 6.5814 -10.6762 1.2712 42 1 5.9071 -13.8365 -3.4828 43 1 3.8294 -10.0426 -1.9486 44 1 2.5276 -3.8681 0.9086 45 1 2.5625 -3.8542 -0.8767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028733820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:57 Heat of formation + Delta-G solvation = 104.560110 kcal Electronic energy + Delta-G solvation = -27734.290603 eV Core-core repulsion = 23754.205076 eV Total energy + Delta-G solvation = -3980.085527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.48609 -40.25069 -38.58285 -37.51474 -34.71202 -33.64727 -32.60991 -32.20891 -31.32751 -30.47164 -29.62512 -28.17845 -25.68555 -24.61214 -24.01039 -23.21517 -22.55249 -21.28620 -20.46177 -19.85847 -19.54833 -18.89912 -17.75762 -16.84616 -16.32009 -16.12581 -15.91063 -15.69500 -15.31608 -15.08951 -14.73280 -14.53068 -14.38744 -13.85871 -13.72160 -13.45939 -13.18175 -12.64255 -12.63271 -12.49424 -12.08645 -11.75916 -11.68314 -11.54172 -11.46615 -10.94550 -10.91771 -10.78995 -10.52999 -10.42411 -10.41125 -10.13834 -10.02087 -9.92282 -9.74293 -9.49616 -9.28419 -8.97551 -8.86836 -8.63922 -6.82303 -5.64281 -3.05884 0.38669 0.81267 1.35509 2.15478 2.41785 2.98240 3.17306 3.40981 3.45821 3.47724 3.53429 3.73052 4.14231 4.44616 4.49271 4.55064 4.64102 4.80806 4.94078 5.11209 5.20452 5.27985 5.35634 5.42029 5.53841 5.59615 5.71424 5.73795 5.75971 5.90485 6.03707 6.05955 6.10707 6.11855 6.16830 6.36304 6.43359 6.52405 6.54169 6.56371 6.60648 6.73912 6.92227 7.52616 7.55108 7.57713 7.63614 7.86970 8.24104 8.37655 9.23277 9.84077 10.48981 11.39635 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.001847 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.920949 B =15153.181477 C =15710.996896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.076 0.924 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.556 3.444 17 O -0.537 6.537 18 C -0.135 4.135 19 C -0.068 4.068 20 C -0.129 4.129 21 C -0.061 4.061 22 C -0.030 4.030 23 C 0.274 3.726 24 N -0.531 5.531 25 C 0.267 3.733 26 N -0.485 5.485 27 H 0.443 0.557 28 N -0.306 5.306 29 C -0.016 4.016 30 C 0.140 3.860 31 H 0.252 0.748 32 H 0.107 0.893 33 H 0.012 0.988 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.400 0.600 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.226 0.774 43 H 0.150 0.850 44 H 0.018 0.982 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.556 -27.862 0.258 30.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.371 5.371 16 C 0.343 3.657 17 O -0.414 6.414 18 C -0.138 4.138 19 C -0.088 4.088 20 C -0.147 4.147 21 C -0.082 4.082 22 C -0.033 4.033 23 C -0.006 4.006 24 N -0.259 5.259 25 C -0.032 4.032 26 N -0.203 5.203 27 H 0.289 0.711 28 N -0.136 5.136 29 C -0.037 4.037 30 C 0.014 3.986 31 H 0.063 0.937 32 H 0.125 0.875 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.242 0.758 43 H 0.167 0.833 44 H 0.036 0.964 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.251 -27.583 -0.061 29.789 hybrid contribution 1.170 0.217 0.305 1.228 sum 12.421 -27.366 0.244 30.054 Atomic orbital electron populations 1.69798 1.04868 1.24742 1.57685 1.24788 0.95744 0.97723 1.02510 0.86072 0.78490 0.83350 0.77583 1.21596 1.21670 1.20776 1.19077 0.90497 0.82504 1.42963 0.90543 1.44574 1.01955 0.99687 1.86849 1.21927 0.84642 0.92529 0.98190 1.23006 0.95495 0.98559 1.00364 1.22452 0.98344 0.94006 0.98630 0.90571 1.21502 0.89082 0.91562 0.96950 1.45997 1.39034 1.27307 1.24720 1.18158 0.82212 0.80608 0.84751 1.90782 1.59578 1.69770 1.21319 1.19929 0.99493 0.97826 0.96558 1.21538 0.94840 0.98667 0.93711 1.21036 0.97581 0.95274 1.00796 1.21366 0.98024 0.95823 0.92944 1.17318 0.98542 0.92438 0.94957 1.22254 0.92310 0.95345 0.90656 1.70580 1.28899 1.11432 1.14946 1.26165 0.87509 0.94534 0.95010 1.48124 1.31960 1.24234 1.15991 0.71095 1.78200 1.21239 1.01189 1.12964 1.21312 0.92029 0.91028 0.99313 1.21396 0.93476 0.85975 0.97737 0.93746 0.87533 0.97027 0.91789 0.92096 0.91008 0.91427 0.76435 0.84920 0.84553 0.84764 0.75752 0.83257 0.96382 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.36 3.40 -169.83 -0.58 -15.94 16 10 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 11 C -0.13 -2.49 6.54 -24.58 -0.16 -2.65 16 12 C -0.11 -1.89 2.98 -88.79 -0.26 -2.15 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 14 C 0.13 1.96 5.00 -4.04 -0.02 1.94 16 15 N -0.72 -9.45 5.38 -61.24 -0.33 -9.78 16 16 C 0.56 8.05 7.77 -12.32 -0.10 7.95 16 17 O -0.54 -9.65 16.34 5.33 0.09 -9.56 16 18 C -0.13 -1.62 5.87 -105.01 -0.62 -2.24 16 19 C -0.07 -0.63 9.54 -39.13 -0.37 -1.01 16 20 C -0.13 -1.05 10.02 -39.69 -0.40 -1.44 16 21 C -0.06 -0.56 9.68 -39.17 -0.38 -0.94 16 22 C -0.03 -0.33 5.87 -104.95 -0.62 -0.95 16 23 C 0.27 3.08 7.77 -156.63 -1.22 1.86 16 24 N -0.53 -5.61 10.82 -12.38 -0.13 -5.75 16 25 C 0.27 1.56 13.11 -90.70 -1.19 0.37 16 26 N -0.48 -2.73 7.44 29.52 0.22 -2.51 16 27 H 0.44 0.69 8.96 -182.34 -1.63 -0.95 16 28 N -0.31 -3.01 12.42 32.10 0.40 -2.61 16 29 C -0.02 -0.20 9.23 -38.84 -0.36 -0.55 16 30 C 0.14 2.82 6.67 -2.90 -0.02 2.80 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.11 2.89 5.88 -51.93 -0.31 2.59 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 4.35 6.43 -40.82 -0.26 4.08 16 39 H 0.13 0.97 6.39 -52.48 -0.34 0.64 16 40 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 1.05 7.82 -52.48 -0.41 0.64 16 42 H 0.23 0.12 8.06 -52.49 -0.42 -0.30 16 43 H 0.15 2.04 7.42 -52.48 -0.39 1.65 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -36.77 378.09 -12.15 -48.93 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.08 Total: 0.92 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -5.97 Total: -0.17 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: 0.14 Total: -62.89 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.77 -12.15 -48.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028733820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.486 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds