Wall clock time and date at job start Sat Apr 11 2020 06:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99481 * 2 1 4 4 H 1.48499 * 109.46921 * 269.99437 * 3 2 1 5 5 H 1.48491 * 109.47345 * 29.99708 * 3 2 1 6 6 H 1.48503 * 109.46612 * 150.00017 * 3 2 1 7 7 C 1.38802 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00056 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64637 * 359.97438 * 9 7 2 11 11 C 1.54914 * 104.83011 * 155.90144 * 10 9 7 12 12 C 1.55158 * 101.58024 * 37.00996 * 11 10 9 13 13 H 1.08997 * 110.71879 * 83.03960 * 12 11 10 14 14 C 1.52997 * 110.71889 * 206.13064 * 12 11 10 15 15 N 1.46506 * 109.47289 * 182.55931 * 14 12 11 16 16 C 1.34774 * 120.00072 * 180.02562 * 15 14 12 17 17 O 1.21546 * 120.00279 * 0.02562 * 16 15 14 18 18 C 1.47866 * 119.99657 * 180.02562 * 16 15 14 19 19 C 1.39652 * 120.08856 * 359.72633 * 18 16 15 20 20 C 1.38020 * 120.09722 * 179.72173 * 19 18 16 21 21 C 1.38159 * 120.26799 * 0.55135 * 20 19 18 22 22 C 1.39409 * 120.17737 * 359.72856 * 21 20 19 23 23 C 1.48414 * 120.05261 * 180.02562 * 22 21 20 24 24 N 1.33972 * 125.65163 * 179.66833 * 23 22 21 25 25 C 1.30685 * 109.78104 * 179.81651 * 24 23 22 26 26 N 1.34517 * 108.29110 * 0.44373 * 25 24 23 27 27 H 0.97000 * 126.74160 * 179.73415 * 26 25 24 28 28 N 1.31492 * 125.65039 * 359.97325 * 23 22 21 29 29 C 1.39098 * 119.89573 * 359.97438 * 22 21 20 30 30 C 1.47320 * 125.61599 * 180.19390 * 9 7 2 31 31 H 0.97005 * 120.00182 * 0.02562 * 1 2 3 32 32 H 1.09000 * 110.36749 * 37.06850 * 10 9 7 33 33 H 1.09001 * 110.45864 * 274.78812 * 10 9 7 34 34 H 1.09001 * 111.00531 * 278.93476 * 11 10 9 35 35 H 1.09001 * 111.03720 * 155.09842 * 11 10 9 36 36 H 1.09001 * 109.47289 * 62.55803 * 14 12 11 37 37 H 1.09004 * 109.47261 * 302.56059 * 14 12 11 38 38 H 0.97001 * 119.99251 * 0.02562 * 15 14 12 39 39 H 1.08005 * 119.94942 * 359.97438 * 19 18 16 40 40 H 1.07994 * 119.86215 * 180.29976 * 20 19 18 41 41 H 1.08006 * 119.91274 * 179.69457 * 21 20 19 42 42 H 1.08000 * 125.85051 * 180.16759 * 25 24 23 43 43 H 1.08004 * 120.13310 * 179.97438 * 29 22 21 44 44 H 1.08991 * 110.06396 * 61.68337 * 30 9 7 45 45 H 1.09005 * 109.84901 * 300.41965 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0005 11 6 -0.4015 -3.9325 -0.6109 12 6 0.7786 -4.7524 -0.0255 13 1 0.5447 -5.1003 0.9807 14 6 1.1234 -5.9316 -0.9373 15 7 2.1979 -6.7208 -0.3298 16 6 2.6688 -7.8154 -0.9596 17 8 2.2024 -8.1476 -2.0317 18 6 3.7529 -8.6121 -0.3461 19 6 4.2941 -8.2289 0.8829 20 6 5.3020 -8.9757 1.4584 21 6 5.7891 -10.0988 0.8180 22 6 5.2612 -10.4884 -0.4121 23 6 5.7861 -11.6957 -1.0973 24 7 5.3589 -12.1736 -2.2738 25 6 6.0371 -13.2455 -2.5882 26 7 6.9206 -13.4901 -1.6038 27 1 7.5553 -14.2224 -1.5625 28 7 6.7436 -12.4767 -0.6477 29 6 4.2409 -9.7445 -0.9956 30 6 1.9339 -3.7298 0.0051 31 1 -0.4851 0.8401 -0.0004 32 1 -0.5992 -1.7591 -0.6154 33 1 -0.5290 -2.4858 1.0182 34 1 -0.3518 -3.8987 -1.6993 35 1 -1.3589 -4.3333 -0.2779 36 1 1.4511 -5.5573 -1.9071 37 1 0.2417 -6.5589 -1.0691 38 1 2.5703 -6.4554 0.5256 39 1 3.9204 -7.3491 1.3857 40 1 5.7144 -8.6786 2.4112 41 1 6.5814 -10.6762 1.2712 42 1 5.9071 -13.8365 -3.4828 43 1 3.8294 -10.0426 -1.9486 44 1 2.5276 -3.8681 0.9086 45 1 2.5625 -3.8542 -0.8767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028733820.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:56 Heat of formation + Delta-G solvation = 80.499249 kcal Electronic energy + Delta-G solvation = -27735.333960 eV Core-core repulsion = 23754.205076 eV Total energy + Delta-G solvation = -3981.128884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.07708 -41.26652 -39.64837 -38.97740 -36.11270 -34.54274 -34.07676 -33.00790 -32.16464 -31.61746 -30.96215 -29.72954 -27.35210 -25.75412 -25.10611 -24.02187 -23.47993 -22.19175 -21.90514 -21.28547 -20.73659 -19.50152 -18.89362 -18.52746 -17.36351 -17.16648 -16.78412 -16.61580 -16.51594 -16.21510 -15.93990 -15.83582 -15.48076 -15.15943 -14.67856 -14.47907 -14.40182 -14.24005 -13.71522 -13.52030 -13.34584 -13.24017 -13.11253 -12.82069 -12.77294 -12.64533 -12.31275 -12.00067 -11.88012 -11.80369 -11.56216 -11.53689 -11.36028 -11.18536 -11.05914 -10.99024 -10.71634 -10.23778 -9.94199 -9.63727 -8.85056 -7.75076 -5.18822 -0.36215 -0.00318 0.79273 1.47743 1.49599 1.58010 1.66356 1.71629 2.08036 2.11719 2.51351 2.89746 2.97548 3.34419 3.49786 3.63635 3.69440 3.84559 3.96838 3.97596 4.05826 4.09446 4.13778 4.21347 4.45363 4.48670 4.64365 4.68114 4.73805 4.84272 4.91643 4.94620 5.06624 5.08633 5.10653 5.16158 5.26732 5.34468 5.36614 5.41477 5.44281 5.50832 5.69382 5.77986 5.85787 6.21659 6.34640 6.50945 7.00285 7.13817 7.16399 7.81770 8.45198 9.26708 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.001847 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.920949 B =15153.181477 C =15710.996896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.237 4.237 8 H 0.080 0.920 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.123 4.123 12 C -0.093 4.093 13 H 0.100 0.900 14 C 0.143 3.857 15 N -0.708 5.708 16 C 0.556 3.444 17 O -0.580 6.580 18 C -0.150 4.150 19 C -0.063 4.063 20 C -0.117 4.117 21 C -0.057 4.057 22 C -0.041 4.041 23 C 0.252 3.748 24 N -0.579 5.579 25 C 0.281 3.719 26 N -0.470 5.470 27 H 0.461 0.539 28 N -0.325 5.325 29 C -0.031 4.031 30 C 0.136 3.864 31 H 0.246 0.754 32 H 0.070 0.930 33 H -0.008 1.008 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.414 0.586 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.149 0.851 42 H 0.275 0.725 43 H 0.124 0.876 44 H 0.034 0.966 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 -29.609 1.556 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.366 4.366 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.162 4.162 12 C -0.113 4.113 13 H 0.118 0.882 14 C 0.019 3.981 15 N -0.360 5.360 16 C 0.344 3.656 17 O -0.462 6.462 18 C -0.153 4.153 19 C -0.082 4.082 20 C -0.135 4.135 21 C -0.077 4.077 22 C -0.044 4.044 23 C -0.028 4.028 24 N -0.308 5.308 25 C -0.017 4.017 26 N -0.191 5.191 27 H 0.311 0.689 28 N -0.156 5.156 29 C -0.053 4.053 30 C 0.011 3.989 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.010 0.990 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.252 0.748 39 H 0.174 0.826 40 H 0.190 0.810 41 H 0.167 0.833 42 H 0.291 0.709 43 H 0.142 0.858 44 H 0.052 0.948 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 13.092 -29.378 1.265 32.188 hybrid contribution 0.701 0.637 -0.121 0.955 sum 13.793 -28.741 1.144 31.900 Atomic orbital electron populations 1.70058 1.06138 1.24912 1.58757 1.25625 0.96664 1.00957 1.02962 0.85068 0.77640 0.79192 0.77376 1.21510 1.22026 1.19427 1.19452 0.91008 0.83886 1.42241 0.90210 1.44893 1.02782 1.00973 1.86811 1.21722 0.84077 0.94816 0.96682 1.22851 0.97836 0.95540 0.99980 1.22291 0.95746 0.93182 1.00038 0.88188 1.21257 0.89928 0.91168 0.95731 1.45832 1.38472 1.26664 1.25050 1.18533 0.82268 0.80588 0.84161 1.90755 1.61152 1.70939 1.23318 1.19771 0.99667 0.97908 0.97962 1.21791 0.94654 0.99339 0.92444 1.21428 0.96391 0.94060 1.01602 1.21621 0.97890 0.96121 0.92053 1.17495 0.98387 0.92671 0.95814 1.22361 0.93155 0.95934 0.91340 1.70551 1.31012 1.13665 1.15551 1.27057 0.85735 0.93254 0.95627 1.48065 1.32077 1.23804 1.15111 0.68886 1.78069 1.21082 1.02031 1.14411 1.21140 0.93196 0.92029 0.98912 1.21583 0.94751 0.84579 0.97990 0.94417 0.91226 0.99017 0.92060 0.89176 0.92828 0.90466 0.74846 0.82566 0.81015 0.83327 0.70934 0.85753 0.94831 0.96176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 10.09 21.65 0.22 -56.50 16 2 C -0.07 -3.97 5.49 84.86 0.47 -3.51 16 3 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 4 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.24 -13.27 10.28 84.03 0.86 -12.41 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -32.02 3.40 -691.23 -2.35 -34.37 16 10 C 0.15 7.40 5.89 86.86 0.51 7.91 16 11 C -0.12 -4.40 6.54 31.99 0.21 -4.19 16 12 C -0.09 -2.88 2.98 -9.61 -0.03 -2.90 16 13 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 14 C 0.14 4.03 5.00 86.38 0.43 4.46 16 15 N -0.71 -17.47 5.38 -465.94 -2.51 -19.97 16 16 C 0.56 15.99 7.77 86.79 0.67 16.66 16 17 O -0.58 -21.51 16.34 -3.86 -0.06 -21.57 16 18 C -0.15 -3.55 5.87 -20.12 -0.12 -3.67 16 19 C -0.06 -1.02 9.54 22.56 0.22 -0.81 16 20 C -0.12 -1.54 10.02 22.20 0.22 -1.32 16 21 C -0.06 -0.94 9.68 22.53 0.22 -0.72 16 22 C -0.04 -0.92 5.87 -20.08 -0.12 -1.03 16 23 C 0.25 5.67 7.77 137.47 1.07 6.74 16 24 N -0.58 -12.26 10.82 -193.09 -2.09 -14.35 16 25 C 0.28 2.81 13.11 180.38 2.37 5.18 16 26 N -0.47 -4.49 7.44 -60.52 -0.45 -4.94 16 27 H 0.46 0.39 8.96 -213.10 -1.91 -1.52 16 28 N -0.33 -6.10 12.42 -52.35 -0.65 -6.75 16 29 C -0.03 -0.81 9.23 22.75 0.21 -0.60 16 30 C 0.14 5.29 6.67 86.67 0.58 5.86 16 31 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 32 H 0.07 3.92 5.88 -2.39 -0.01 3.91 16 33 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 34 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.05 1.74 8.00 -2.39 -0.02 1.72 16 37 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.41 7.84 6.43 -92.71 -0.60 7.24 16 39 H 0.16 1.72 6.39 -2.91 -0.02 1.70 16 40 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.15 2.01 7.82 -2.91 -0.02 1.98 16 42 H 0.28 -0.57 8.06 -2.91 -0.02 -0.60 16 43 H 0.12 3.74 7.42 -2.91 -0.02 3.72 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.02 0.81 7.73 -2.38 -0.02 0.79 16 Total: -1.00 -84.15 378.09 0.45 -83.71 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -1.46 Total: 11.21 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.77 Total: 15.65 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -7.83 Total: -136.88 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.06 Total: -21.57 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -84.15 0.45 -83.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028733820.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.205 kcal (2) G-P(sol) polarization free energy of solvation -84.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds