Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48494 * 109.46924 * 264.66596 * 3 2 1 5 5 H 1.48495 * 109.47244 * 24.67225 * 3 2 1 6 6 H 1.48498 * 109.46763 * 144.67060 * 3 2 1 7 7 C 1.38815 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99955 * 336.24522 * 7 2 1 9 9 N 1.36937 * 120.00276 * 156.24265 * 7 2 1 10 10 C 1.47414 * 125.65168 * 162.05254 * 9 7 2 11 11 C 1.54904 * 104.83475 * 155.90466 * 10 9 7 12 12 C 1.55160 * 101.58241 * 37.01229 * 11 10 9 13 13 H 1.08996 * 110.71851 * 83.03462 * 12 11 10 14 14 C 1.52994 * 110.72096 * 206.13458 * 12 11 10 15 15 N 1.46506 * 109.46863 * 182.55979 * 14 12 11 16 16 C 1.34781 * 119.99821 * 180.02562 * 15 14 12 17 17 O 1.21548 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.47852 * 119.99702 * 179.97438 * 16 15 14 19 19 C 1.39623 * 120.11594 * 359.72760 * 18 16 15 20 20 C 1.37975 * 119.98665 * 179.70035 * 19 18 16 21 21 C 1.38268 * 120.21904 * 0.56912 * 20 19 18 22 22 C 1.38918 * 120.22429 * 359.72864 * 21 20 19 23 23 N 1.40227 * 119.99596 * 179.97438 * 22 21 20 24 24 C 1.34722 * 126.83497 * 359.68411 * 23 22 21 25 25 N 1.30860 * 108.02657 * 179.83399 * 24 23 22 26 26 C 1.33262 * 109.84193 * 0.44531 * 25 24 23 27 27 N 1.30745 * 109.00076 * 359.72042 * 26 25 24 28 28 C 1.38595 * 120.00879 * 359.97045 * 22 21 20 29 29 C 1.47320 * 125.61359 * 342.27873 * 9 7 2 30 30 H 0.97001 * 119.99655 * 359.97438 * 1 2 3 31 31 H 1.09007 * 110.36539 * 37.06990 * 10 9 7 32 32 H 1.08998 * 110.46592 * 274.79372 * 10 9 7 33 33 H 1.08999 * 111.00997 * 278.93700 * 11 10 9 34 34 H 1.09000 * 111.03854 * 155.09728 * 11 10 9 35 35 H 1.08997 * 109.47186 * 62.56259 * 14 12 11 36 36 H 1.08993 * 109.47384 * 302.55236 * 14 12 11 37 37 H 0.96993 * 119.99807 * 359.97438 * 15 14 12 38 38 H 1.08000 * 120.00404 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.89131 * 180.29817 * 20 19 18 40 40 H 1.07991 * 119.88798 * 179.74389 * 21 20 19 41 41 H 1.07995 * 125.98894 * 0.02562 * 24 23 22 42 42 H 1.07995 * 125.49739 * 179.74639 * 26 25 24 43 43 H 1.07997 * 120.10449 * 179.97438 * 28 22 21 44 44 H 1.08995 * 110.06787 * 61.67862 * 29 9 7 45 45 H 1.09011 * 109.84795 * 300.42123 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6104 1.9813 -1.3940 5 1 1.3960 2.6826 0.5844 6 1 3.4869 1.4753 0.8096 7 6 2.0103 -1.2022 0.0005 8 1 1.5389 -2.0976 0.3777 9 7 3.2926 -1.2527 -0.4772 10 6 4.2678 -2.3252 -0.2091 11 6 5.2608 -2.2642 -1.3964 12 6 5.3571 -0.7354 -1.6437 13 1 6.0753 -0.2791 -0.9626 14 6 5.7332 -0.4450 -3.0980 15 7 5.8763 1.0009 -3.2860 16 6 6.2056 1.4937 -4.4964 17 8 6.3844 0.7385 -5.4319 18 6 6.3494 2.9529 -4.6862 19 6 6.1390 3.8229 -3.6146 20 6 6.2800 5.1838 -3.7932 21 6 6.6179 5.6915 -5.0341 22 6 6.8232 4.8345 -6.1080 23 7 7.1652 5.3546 -7.3646 24 6 7.3242 6.6535 -7.6850 25 7 7.6447 6.7218 -8.9519 26 6 7.6903 5.4964 -9.4736 27 7 7.4042 4.6258 -8.5410 28 6 6.6902 3.4655 -5.9377 29 6 3.9270 -0.2413 -1.3404 30 1 -0.4850 0.8401 0.0004 31 1 3.7684 -3.2937 -0.1816 32 1 4.7883 -2.1408 0.7307 33 1 4.8577 -2.7766 -2.2698 34 1 6.2304 -2.6765 -1.1171 35 1 4.9515 -0.8216 -3.7576 36 1 6.6765 -0.9371 -3.3346 37 1 5.7332 1.6034 -2.5395 38 1 5.8703 3.4303 -2.6450 39 1 6.1216 5.8549 -2.9621 40 1 6.7227 6.7578 -5.1689 41 1 7.2104 7.4914 -7.0132 42 1 7.9261 5.2605 -10.5007 43 1 6.8491 2.7979 -6.7716 44 1 3.9678 0.7180 -0.8247 45 1 3.3644 -0.1418 -2.2688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028794732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = 124.584611 kcal Electronic energy + Delta-G solvation = -28400.078488 eV Core-core repulsion = 24420.861289 eV Total energy + Delta-G solvation = -3979.217199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.75243 -40.51121 -38.96726 -37.96458 -34.99374 -34.56828 -32.66838 -32.15675 -31.43978 -30.64853 -29.83961 -28.70255 -26.08335 -24.82822 -24.32281 -23.40692 -22.39599 -21.63842 -20.81693 -20.37416 -20.14867 -18.93223 -17.19940 -16.93584 -16.76702 -16.40948 -16.29236 -16.05565 -15.71607 -15.18075 -14.97994 -14.62237 -14.53694 -14.22386 -13.87154 -13.61161 -13.57111 -13.21414 -12.84901 -12.82605 -12.54528 -12.35434 -12.02440 -11.86054 -11.64300 -11.37237 -11.31250 -11.02761 -10.78418 -10.64376 -10.56945 -10.33879 -10.29899 -10.07767 -9.93501 -9.59708 -9.41464 -9.12333 -8.91603 -8.68800 -7.12591 -6.00203 -3.28589 0.09240 0.50944 1.46169 1.68221 2.44396 2.59456 2.95842 3.23255 3.35873 3.41948 3.42680 3.76080 3.92389 4.20133 4.31567 4.43238 4.47857 4.54271 4.61419 4.73724 4.88099 4.96131 4.96782 5.01145 5.18500 5.31355 5.38792 5.51959 5.56187 5.69883 5.74422 5.76598 5.80478 5.85763 5.91950 5.95916 6.01844 6.04742 6.21073 6.26007 6.38990 6.48960 6.53482 6.66759 6.73354 7.33941 7.52584 7.65457 8.03127 8.26212 8.78116 9.63507 10.12271 11.16457 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016314 B = 0.002474 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.871486 B =11317.052201 C =12349.394449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.117 4.117 13 H 0.081 0.919 14 C 0.132 3.868 15 N -0.719 5.719 16 C 0.557 3.443 17 O -0.532 6.532 18 C -0.107 4.107 19 C -0.087 4.087 20 C -0.097 4.097 21 C -0.110 4.110 22 C 0.138 3.862 23 N -0.329 5.329 24 C 0.260 3.740 25 N -0.537 5.537 26 C 0.206 3.794 27 N -0.308 5.308 28 C -0.053 4.053 29 C 0.124 3.876 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.224 0.776 42 H 0.224 0.776 43 H 0.153 0.847 44 H 0.023 0.977 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.995 12.739 -10.188 24.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.370 5.370 16 C 0.343 3.657 17 O -0.409 6.409 18 C -0.110 4.110 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.131 4.131 22 C 0.045 3.955 23 N -0.113 5.113 24 C -0.035 4.035 25 N -0.263 5.263 26 C -0.097 4.097 27 N -0.134 5.134 28 C -0.073 4.073 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.236 0.764 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.240 0.760 42 H 0.240 0.760 43 H 0.171 0.829 44 H 0.040 0.960 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.911 11.757 -11.134 24.146 hybrid contribution 0.217 1.563 0.671 1.715 sum 18.129 13.320 -10.463 24.810 Atomic orbital electron populations 1.69861 1.05533 1.26568 1.52978 1.24976 0.95159 0.97399 1.00373 0.86882 0.78953 0.84958 0.77400 1.21341 1.23220 1.20686 1.18679 0.85223 0.95681 1.37346 0.88918 1.44851 1.10888 1.22207 1.55717 1.21614 0.90137 0.93113 0.94447 1.22731 0.99553 0.93677 1.00032 1.22472 0.98282 0.98229 0.94654 0.90098 1.21491 1.01917 0.79190 0.96562 1.45972 1.70300 1.09362 1.11391 1.18067 0.77292 0.87353 0.83010 1.90797 1.50231 1.59432 1.40455 1.19892 1.03391 0.93746 0.94009 1.21541 0.96873 0.93581 0.98666 1.20967 0.98653 0.95228 0.96667 1.20995 1.00873 0.99615 0.91635 1.17404 1.03175 0.93272 0.81637 1.47743 1.50088 1.05831 1.07629 1.26219 0.95683 0.87724 0.93877 1.70647 1.23578 1.25228 1.06873 1.26226 0.97237 0.85666 1.00528 1.78249 1.24044 1.19826 0.91234 1.20994 0.95612 0.92942 0.97792 1.21769 0.90738 0.92797 0.94793 0.92705 0.93097 0.95739 0.90816 0.91158 0.90601 0.90975 0.76362 0.84573 0.83711 0.84455 0.76030 0.75950 0.82911 0.95967 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 2 C 0.02 0.56 5.43 -17.43 -0.09 0.47 16 3 Si 0.89 21.73 24.39 -169.99 -4.15 17.59 16 4 H -0.29 -6.62 6.84 56.52 0.39 -6.23 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.28 -6.66 6.87 56.52 0.39 -6.28 16 7 C -0.24 -6.77 10.56 -15.06 -0.16 -6.93 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.61 -14.26 3.22 -169.84 -0.55 -14.81 16 10 C 0.13 2.46 7.23 -2.54 -0.02 2.44 16 11 C -0.12 -1.76 6.54 -24.58 -0.16 -1.92 16 12 C -0.12 -1.75 2.98 -88.79 -0.26 -2.01 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.13 1.82 5.00 -4.04 -0.02 1.80 16 15 N -0.72 -9.44 5.38 -61.25 -0.33 -9.76 16 16 C 0.56 7.91 7.77 -12.32 -0.10 7.81 16 17 O -0.53 -9.30 16.34 5.32 0.09 -9.21 16 18 C -0.11 -1.24 5.87 -104.99 -0.62 -1.86 16 19 C -0.09 -0.78 9.54 -39.16 -0.37 -1.15 16 20 C -0.10 -0.65 10.02 -39.67 -0.40 -1.05 16 21 C -0.11 -0.74 9.47 -39.32 -0.37 -1.11 16 22 C 0.14 1.34 6.69 -83.63 -0.56 0.78 16 23 N -0.33 -3.32 3.82 -11.83 -0.05 -3.37 16 24 C 0.26 2.04 11.98 -90.37 -1.08 0.96 16 25 N -0.54 -5.18 11.19 -15.75 -0.18 -5.36 16 26 C 0.21 1.92 13.03 -91.77 -1.20 0.73 16 27 N -0.31 -3.57 12.05 29.30 0.35 -3.22 16 28 C -0.05 -0.62 9.23 -38.99 -0.36 -0.98 16 29 C 0.12 2.52 4.55 -2.90 -0.01 2.51 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.40 4.58 6.43 -40.82 -0.26 4.32 16 38 H 0.14 1.04 6.40 -52.49 -0.34 0.70 16 39 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.14 0.43 6.79 -52.49 -0.36 0.08 16 41 H 0.22 0.66 7.09 -52.49 -0.37 0.29 16 42 H 0.22 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.15 2.09 7.33 -52.49 -0.38 1.71 16 44 H 0.02 0.48 3.55 -51.93 -0.18 0.30 16 45 H 0.04 0.94 7.73 -51.92 -0.40 0.54 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -36.81 371.62 -9.89 -46.70 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.68 Total: 2.28 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -5.78 Total: 0.47 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.03 Total: -63.42 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.81 -9.89 -46.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028794732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.282 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds