Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99836 * 2 1 4 4 H 1.48504 * 109.47022 * 274.98583 * 3 2 1 5 5 H 1.48498 * 109.47173 * 34.98583 * 3 2 1 6 6 H 1.48495 * 109.47140 * 154.98665 * 3 2 1 7 7 C 1.38806 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00568 * 187.06192 * 7 2 1 9 9 N 1.36937 * 119.99955 * 7.06514 * 7 2 1 10 10 C 1.47022 * 125.65073 * 354.86936 * 9 7 2 11 11 C 1.54321 * 107.27309 * 178.91636 * 10 9 7 12 12 C 1.55156 * 102.94445 * 337.81017 * 11 10 9 13 13 H 1.08993 * 111.00432 * 277.38815 * 12 11 10 14 14 C 1.53003 * 111.00443 * 153.57209 * 12 11 10 15 15 N 1.46501 * 109.47279 * 174.99964 * 14 12 11 16 16 C 1.34771 * 119.99860 * 179.97438 * 15 14 12 17 17 O 1.21616 * 120.00365 * 0.02562 * 16 15 14 18 18 C 1.47295 * 119.99613 * 180.02562 * 16 15 14 19 19 C 1.37961 * 126.80873 * 0.20220 * 18 16 15 20 20 N 1.34155 * 107.88713 * 180.25575 * 19 18 16 21 21 H 0.96998 * 125.17073 * 179.70339 * 20 19 18 22 22 N 1.39772 * 109.67224 * 359.72509 * 20 19 18 23 23 C 1.31362 * 109.08165 * 359.97438 * 22 20 19 24 24 C 1.48294 * 126.51431 * 179.97438 * 23 22 20 25 25 C 1.39811 * 120.54260 * 325.02870 * 24 23 22 26 26 C 1.38396 * 118.31051 * 180.25068 * 25 24 23 27 27 C 1.38328 * 119.28575 * 359.45975 * 26 25 24 28 28 N 1.31889 * 121.03464 * 0.55824 * 27 26 25 29 29 C 1.31741 * 121.86078 * 359.71431 * 28 27 26 30 30 C 1.47433 * 125.64851 * 174.84520 * 9 7 2 31 31 H 0.97006 * 120.00130 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.87759 * 59.50421 * 10 9 7 33 33 H 1.08999 * 109.88378 * 298.34011 * 10 9 7 34 34 H 1.08999 * 110.72542 * 219.44389 * 11 10 9 35 35 H 1.09011 * 110.86901 * 96.24435 * 11 10 9 36 36 H 1.08999 * 109.46881 * 54.99947 * 14 12 11 37 37 H 1.09001 * 109.47270 * 295.00182 * 14 12 11 38 38 H 0.97000 * 119.99622 * 359.97438 * 15 14 12 39 39 H 1.08004 * 126.05985 * 359.96100 * 19 18 16 40 40 H 1.08005 * 120.84123 * 359.97438 * 25 24 23 41 41 H 1.07998 * 120.36113 * 179.71024 * 26 25 24 42 42 H 1.07997 * 119.47871 * 180.29831 * 27 26 25 43 43 H 1.07994 * 119.70756 * 179.97438 * 29 28 27 44 44 H 1.08998 * 110.36186 * 85.31439 * 30 9 7 45 45 H 1.08999 * 110.36705 * 322.99008 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3334 -2.3836 -0.1448 10 6 -0.1281 -2.5322 -0.2032 11 6 -0.4286 -4.0331 -0.3995 12 6 0.8920 -4.5753 -1.0074 13 1 0.9278 -4.4006 -2.0827 14 6 1.0726 -6.0610 -0.6898 15 7 2.2639 -6.5660 -1.3768 16 6 2.6227 -7.8581 -1.2418 17 8 1.9573 -8.6049 -0.5501 18 6 3.8208 -8.3656 -1.9321 19 6 4.6745 -7.6465 -2.7429 20 7 5.6322 -8.4805 -3.1754 21 1 6.3616 -8.2354 -3.7660 22 7 5.4191 -9.7565 -2.6462 23 6 4.3451 -9.7340 -1.8901 24 6 3.7682 -10.8773 -1.1425 25 6 3.8228 -12.1711 -1.6697 26 6 3.2653 -13.2032 -0.9353 27 6 2.6874 -12.9261 0.2906 28 7 2.6508 -11.6950 0.7623 29 6 3.1633 -10.6798 0.0971 30 6 1.9495 -3.7172 -0.2692 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5255 -1.9617 -1.0427 33 1 -0.5737 -2.1837 0.7285 34 1 -1.2581 -4.1730 -1.0926 35 1 -0.6401 -4.5150 0.5551 36 1 0.1963 -6.6140 -1.0281 37 1 1.1911 -6.1908 0.3860 38 1 2.7945 -5.9704 -1.9288 39 1 4.5848 -6.5989 -2.9900 40 1 4.2843 -12.3596 -2.6278 41 1 3.2848 -14.2147 -1.3132 42 1 2.2558 -13.7298 0.8685 43 1 3.1136 -9.6857 0.5161 44 1 2.1547 -4.1336 0.7170 45 1 2.8666 -3.6582 -0.8554 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028873908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = 101.034117 kcal Electronic energy + Delta-G solvation = -28413.959375 eV Core-core repulsion = 24433.720950 eV Total energy + Delta-G solvation = -3980.238425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56278 -39.93777 -39.27606 -37.59372 -34.73120 -33.64227 -32.59657 -32.10304 -30.95411 -30.30803 -29.57581 -28.16866 -25.60609 -24.40914 -24.01704 -23.64231 -22.63949 -20.72274 -20.37348 -19.99973 -19.68690 -18.68729 -17.22916 -16.92964 -16.46734 -16.27208 -15.93292 -15.78641 -15.36367 -14.93285 -14.68379 -14.47394 -14.13413 -13.90301 -13.86091 -13.58563 -13.23494 -13.16852 -12.87300 -12.36014 -12.12537 -11.98042 -11.75343 -11.39510 -11.37257 -10.92016 -10.83349 -10.69147 -10.42763 -10.17222 -10.04585 -9.92588 -9.85168 -9.73398 -9.69468 -9.56768 -9.27860 -8.91975 -8.71084 -8.60064 -6.85228 -5.74966 -3.07396 0.61782 1.17325 1.18029 2.00008 2.26950 3.22516 3.31205 3.37246 3.42424 3.44916 3.74847 3.91248 4.21593 4.46847 4.48849 4.65744 4.75590 4.81395 4.91167 4.99163 5.10404 5.16769 5.22596 5.33417 5.42776 5.52164 5.67624 5.70259 5.78487 5.88895 5.98628 6.04615 6.06392 6.09026 6.34170 6.42900 6.47587 6.53228 6.58940 6.66767 6.68645 6.89770 7.05976 7.53702 7.56094 7.62347 7.80676 7.91385 8.23766 8.27060 9.19297 9.80127 10.46640 11.37098 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018953 B = 0.002197 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.950617 B =12744.181536 C =13726.827067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.720 5.720 16 C 0.589 3.411 17 O -0.538 6.538 18 C -0.278 4.278 19 C 0.113 3.887 20 N -0.462 5.462 21 H 0.445 0.555 22 N -0.283 5.283 23 C 0.176 3.824 24 C -0.084 4.084 25 C -0.046 4.046 26 C -0.189 4.189 27 C 0.108 3.892 28 N -0.488 5.488 29 C 0.169 3.831 30 C 0.142 3.858 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.192 0.808 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.020 0.980 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.858 -22.390 -7.797 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.097 0.903 14 C 0.011 3.989 15 N -0.370 5.370 16 C 0.376 3.624 17 O -0.417 6.417 18 C -0.293 4.293 19 C -0.038 4.038 20 N -0.167 5.167 21 H 0.290 0.710 22 N -0.104 5.104 23 C 0.006 3.994 24 C -0.088 4.088 25 C -0.073 4.073 26 C -0.209 4.209 27 C -0.049 4.049 28 N -0.196 5.196 29 C 0.011 3.989 30 C 0.016 3.984 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.231 0.769 39 H 0.209 0.791 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.193 0.807 44 H 0.037 0.963 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.867 -23.204 -6.927 25.788 hybrid contribution 0.873 1.861 -1.355 2.462 sum 9.740 -21.343 -8.281 24.879 Atomic orbital electron populations 1.69982 1.04911 1.25055 1.56691 1.24827 0.95698 0.97683 1.02189 0.86131 0.78694 0.83688 0.77457 1.21659 1.21753 1.20659 1.19041 0.91078 0.82597 1.43116 0.90499 1.44490 1.01758 1.00930 1.86128 1.21156 0.84414 0.88455 1.00834 1.22850 0.95269 0.99590 0.99651 1.22613 0.98611 0.91932 1.00564 0.90300 1.21421 0.86475 0.93723 0.97315 1.45901 1.29784 1.09980 1.51330 1.17125 0.83152 0.81815 0.80293 1.90755 1.54276 1.56113 1.40554 1.21350 1.02619 0.93721 1.11657 1.23127 0.88816 0.97318 0.94514 1.45944 1.24218 1.06605 1.39941 0.70973 1.77335 1.18332 0.99182 1.15520 1.21565 0.91533 0.91963 0.94298 1.18697 1.02946 0.90690 0.96438 1.21598 0.95046 0.91287 0.99337 1.22006 1.01887 1.00144 0.96856 1.22947 0.94319 0.94435 0.93164 1.67864 1.16918 0.99703 1.35112 1.23482 0.87490 0.98603 0.89364 1.21589 0.93988 0.86640 0.96170 0.93733 0.93449 0.94080 0.92009 0.92117 0.91507 0.91062 0.76854 0.79103 0.84782 0.84664 0.82774 0.80676 0.96258 0.94715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 10.36 55.49 0.57 -26.09 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 21.68 29.56 -169.99 -5.02 16.66 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.26 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.61 -14.97 3.39 -170.07 -0.58 -15.54 16 10 C 0.18 4.15 5.38 -3.07 -0.02 4.14 16 11 C -0.13 -2.37 6.42 -24.90 -0.16 -2.53 16 12 C -0.12 -1.83 3.05 -88.47 -0.27 -2.10 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.13 1.81 5.13 -4.04 -0.02 1.78 16 15 N -0.72 -8.26 5.49 -61.42 -0.34 -8.60 16 16 C 0.59 7.55 7.68 -12.58 -0.10 7.45 16 17 O -0.54 -8.51 12.48 5.26 0.07 -8.45 16 18 C -0.28 -3.02 6.27 -102.95 -0.65 -3.67 16 19 C 0.11 0.80 11.50 -16.64 -0.19 0.61 16 20 N -0.46 -3.19 7.20 30.81 0.22 -2.97 16 21 H 0.45 1.44 8.96 -182.85 -1.64 -0.20 16 22 N -0.28 -2.97 12.64 34.57 0.44 -2.53 16 23 C 0.18 2.07 6.96 -80.56 -0.56 1.51 16 24 C -0.08 -1.03 5.74 -104.76 -0.60 -1.63 16 25 C -0.05 -0.46 9.92 -38.94 -0.39 -0.85 16 26 C -0.19 -1.65 10.10 -39.49 -0.40 -2.05 16 27 C 0.11 1.10 11.17 -17.49 -0.20 0.90 16 28 N -0.49 -6.54 10.35 -12.96 -0.13 -6.68 16 29 C 0.17 2.31 8.96 -17.18 -0.15 2.15 16 30 C 0.14 2.71 6.65 -2.52 -0.02 2.70 16 31 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.05 1.24 7.30 -51.93 -0.38 0.86 16 33 H 0.04 1.08 7.61 -51.93 -0.40 0.69 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.02 8.04 -51.92 -0.42 0.60 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.04 7.96 -51.93 -0.41 0.63 16 38 H 0.40 3.61 7.43 -40.82 -0.30 3.31 16 39 H 0.19 0.62 7.48 -52.48 -0.39 0.22 16 40 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.18 2.58 5.69 -52.49 -0.30 2.28 16 44 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -35.38 374.75 -10.25 -45.62 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.15 Total: 1.23 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -3.96 Total: 1.70 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 0.18 Total: -62.42 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.07 Total: -8.45 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.38 -10.25 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028873908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.659 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds