Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48502 * 109.47143 * 264.67068 * 3 2 1 5 5 H 1.48505 * 109.47061 * 24.67132 * 3 2 1 6 6 H 1.48500 * 109.47272 * 144.67023 * 3 2 1 7 7 C 1.38812 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00269 * 336.24237 * 7 2 1 9 9 N 1.36939 * 119.99641 * 156.24782 * 7 2 1 10 10 C 1.47430 * 125.64910 * 162.05163 * 9 7 2 11 11 C 1.54910 * 104.83217 * 155.90121 * 10 9 7 12 12 C 1.55159 * 101.58329 * 37.00702 * 11 10 9 13 13 H 1.09007 * 110.71894 * 83.03401 * 12 11 10 14 14 C 1.52994 * 110.72509 * 206.13328 * 12 11 10 15 15 N 1.46490 * 109.47636 * 182.56038 * 14 12 11 16 16 C 1.34775 * 120.00496 * 180.02562 * 15 14 12 17 17 O 1.21618 * 119.99853 * 359.97438 * 16 15 14 18 18 C 1.47290 * 120.00229 * 180.02562 * 16 15 14 19 19 C 1.37963 * 126.81025 * 359.68133 * 18 16 15 20 20 N 1.34160 * 107.88629 * 179.83669 * 19 18 16 21 21 H 0.97001 * 125.15548 * 180.12882 * 20 19 18 22 22 N 1.39761 * 109.67321 * 0.44207 * 20 19 18 23 23 C 1.31368 * 109.08361 * 359.72474 * 22 20 19 24 24 C 1.48295 * 126.51265 * 179.97438 * 23 22 20 25 25 C 1.39802 * 120.54036 * 325.02551 * 24 23 22 26 26 C 1.38408 * 118.30788 * 179.97438 * 25 24 23 27 27 C 1.38325 * 119.28390 * 359.97438 * 26 25 24 28 28 N 1.31890 * 121.04086 * 0.02562 * 27 26 25 29 29 C 1.31743 * 121.85310 * 359.72447 * 28 27 26 30 30 C 1.47318 * 125.61541 * 342.26844 * 9 7 2 31 31 H 0.96998 * 119.99933 * 0.02562 * 1 2 3 32 32 H 1.08998 * 110.36598 * 37.06247 * 10 9 7 33 33 H 1.08994 * 110.45881 * 274.78715 * 10 9 7 34 34 H 1.08999 * 111.00281 * 278.93578 * 11 10 9 35 35 H 1.09002 * 111.03747 * 155.09610 * 11 10 9 36 36 H 1.08997 * 109.46991 * 62.55855 * 14 12 11 37 37 H 1.08999 * 109.47223 * 302.56437 * 14 12 11 38 38 H 0.97006 * 119.99653 * 0.27751 * 15 14 12 39 39 H 1.08002 * 126.05069 * 359.97358 * 19 18 16 40 40 H 1.08001 * 120.84884 * 359.97438 * 25 24 23 41 41 H 1.07994 * 120.35873 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.47669 * 179.97438 * 27 26 25 43 43 H 1.07993 * 119.69978 * 180.26697 * 29 28 27 44 44 H 1.08996 * 110.06553 * 61.68524 * 30 9 7 45 45 H 1.08999 * 109.84981 * 300.42359 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6104 1.9814 -1.3940 5 1 1.3959 2.6826 0.5844 6 1 3.4870 1.4753 0.8096 7 6 2.0102 -1.2022 -0.0005 8 1 1.5388 -2.0980 0.3759 9 7 3.2926 -1.2522 -0.4782 10 6 4.2678 -2.3251 -0.2110 11 6 5.2609 -2.2630 -1.3983 12 6 5.3571 -0.7341 -1.6444 13 1 6.0753 -0.2782 -0.9627 14 6 5.7333 -0.4423 -3.0983 15 7 5.8762 1.0036 -3.2851 16 6 6.2056 1.4976 -4.4951 17 8 6.3845 0.7428 -5.4318 18 6 6.3499 2.9513 -4.6827 19 6 6.1757 3.9296 -3.7256 20 7 6.4041 5.1180 -4.3048 21 1 6.3521 5.9768 -3.8569 22 7 6.7212 4.9311 -5.6531 23 6 6.7007 3.6460 -5.9250 24 6 6.9791 3.0176 -7.2391 25 6 6.5995 3.6531 -8.4250 26 6 6.8826 3.0253 -9.6257 27 6 7.5263 1.8011 -9.6138 28 7 7.8723 1.2256 -8.4786 29 6 7.6284 1.7869 -7.3119 30 6 3.9269 -0.2402 -1.3406 31 1 -0.4850 0.8400 -0.0004 32 1 3.7685 -3.2936 -0.1844 33 1 4.7883 -2.1415 0.7288 34 1 4.8576 -2.7747 -2.2722 35 1 6.2305 -2.6756 -1.1194 36 1 4.9515 -0.8183 -3.7583 37 1 6.6766 -0.9343 -3.3354 38 1 5.7374 1.6053 -2.5370 39 1 5.9057 3.7673 -2.6926 40 1 6.0983 4.6095 -8.4050 41 1 6.6039 3.4864 -10.5616 42 1 7.7483 1.3083 -10.5488 43 1 7.9309 1.2867 -6.4039 44 1 3.9677 0.7187 -0.8241 45 1 3.3645 -0.1399 -2.2689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028873909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 108.983230 kcal Electronic energy + Delta-G solvation = -28953.923182 eV Core-core repulsion = 24974.029456 eV Total energy + Delta-G solvation = -3979.893726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55059 -39.92371 -39.35610 -37.93326 -34.79563 -33.62834 -32.65317 -32.08857 -31.18243 -30.35342 -29.96250 -28.61174 -25.84401 -24.39053 -24.01722 -23.65771 -22.72886 -20.76886 -20.52062 -20.31002 -19.79690 -18.72983 -17.22171 -17.02509 -16.55490 -16.30253 -16.21143 -15.82012 -15.62103 -15.27565 -14.73849 -14.40255 -14.14529 -13.96906 -13.85610 -13.57765 -13.30909 -13.19381 -13.05313 -12.74843 -12.52335 -12.07275 -11.93815 -11.61547 -11.42631 -11.30143 -10.99853 -10.71805 -10.67898 -10.62842 -10.26375 -9.97379 -9.91375 -9.76596 -9.56902 -9.40356 -9.27107 -8.95179 -8.70732 -8.67682 -7.11020 -5.99422 -3.27452 0.63287 1.18363 1.19406 2.01579 2.28244 3.17390 3.22641 3.31745 3.34967 3.41384 3.75818 3.92393 4.23018 4.48319 4.49384 4.67765 4.74360 4.79030 4.84038 4.93096 4.98414 5.04495 5.08216 5.12677 5.23635 5.34760 5.41483 5.61307 5.69889 5.79267 5.80826 5.87337 5.99947 6.03010 6.06108 6.08374 6.25720 6.34394 6.45376 6.56403 6.60968 6.68759 6.70937 6.76191 7.07387 7.51514 7.67178 7.91653 8.24381 8.27136 8.79361 9.64518 10.13713 11.17370 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002940 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.326428 B = 9522.816854 C =10523.133834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.305 1.305 6 H -0.280 1.280 7 C -0.241 4.241 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.116 4.116 13 H 0.080 0.920 14 C 0.134 3.866 15 N -0.723 5.723 16 C 0.591 3.409 17 O -0.536 6.536 18 C -0.279 4.279 19 C 0.113 3.887 20 N -0.461 5.461 21 H 0.446 0.554 22 N -0.281 5.281 23 C 0.176 3.824 24 C -0.083 4.083 25 C -0.045 4.045 26 C -0.188 4.188 27 C 0.108 3.892 28 N -0.488 5.488 29 C 0.168 3.832 30 C 0.125 3.875 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.190 0.810 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.022 0.978 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.510 9.442 -11.984 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.179 4.179 3 Si 0.719 3.281 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.098 0.902 14 C 0.011 3.989 15 N -0.373 5.373 16 C 0.379 3.621 17 O -0.415 6.415 18 C -0.294 4.294 19 C -0.038 4.038 20 N -0.166 5.166 21 H 0.291 0.709 22 N -0.102 5.102 23 C 0.007 3.993 24 C -0.087 4.087 25 C -0.072 4.072 26 C -0.208 4.208 27 C -0.049 4.049 28 N -0.196 5.196 29 C 0.009 3.991 30 C 0.000 4.000 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.207 0.793 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.193 0.807 44 H 0.039 0.961 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.978 9.324 -13.063 24.099 hybrid contribution -0.562 2.054 1.286 2.488 sum 17.416 11.378 -11.776 23.906 Atomic orbital electron populations 1.69861 1.05527 1.26524 1.53102 1.24974 0.95150 0.97372 1.00440 0.86866 0.78918 0.85012 0.77325 1.21373 1.23346 1.20714 1.18689 0.85258 0.95647 1.37216 0.88924 1.44866 1.10884 1.22194 1.55790 1.21617 0.90154 0.93069 0.94485 1.22728 0.99493 0.93802 0.99973 1.22466 0.98131 0.98090 0.94886 0.90208 1.21430 1.01835 0.79424 0.96242 1.45882 1.71168 1.09064 1.11171 1.17102 0.76368 0.85989 0.82683 1.90751 1.51344 1.59492 1.39910 1.21325 1.20601 0.94066 0.93414 1.23121 0.95879 0.85463 0.99327 1.45940 1.54432 1.08514 1.07732 0.70931 1.77329 1.23338 1.16708 0.92846 1.21563 0.95978 0.89283 0.92481 1.18689 1.03845 0.96900 0.89258 1.21612 0.95341 0.98943 0.91321 1.22011 1.02446 0.97703 0.98631 1.22938 0.92936 0.92143 0.96873 1.67855 1.19438 1.34082 0.98271 1.23454 0.90033 0.89124 0.96454 1.21760 0.90851 0.92679 0.94732 0.92739 0.93141 0.95784 0.90813 0.91178 0.90757 0.91040 0.76932 0.79277 0.84735 0.84619 0.82752 0.80738 0.96080 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.75 13.97 55.49 0.78 -26.97 16 2 C 0.02 0.55 5.43 -17.43 -0.09 0.45 16 3 Si 0.89 21.69 24.38 -169.99 -4.15 17.55 16 4 H -0.29 -6.60 6.83 56.52 0.39 -6.21 16 5 H -0.31 -7.62 7.11 56.52 0.40 -7.21 16 6 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 7 C -0.24 -6.75 10.57 -15.06 -0.16 -6.90 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.61 -14.31 3.22 -169.83 -0.55 -14.85 16 10 C 0.13 2.46 7.23 -2.53 -0.02 2.44 16 11 C -0.12 -1.76 6.54 -24.58 -0.16 -1.92 16 12 C -0.12 -1.73 2.98 -88.79 -0.26 -1.99 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 14 C 0.13 1.82 5.00 -4.05 -0.02 1.80 16 15 N -0.72 -9.20 5.42 -61.44 -0.33 -9.53 16 16 C 0.59 8.21 7.68 -12.58 -0.10 8.11 16 17 O -0.54 -8.82 12.47 5.26 0.07 -8.75 16 18 C -0.28 -3.38 6.27 -102.95 -0.65 -4.03 16 19 C 0.11 0.98 11.50 -16.63 -0.19 0.79 16 20 N -0.46 -3.76 7.20 30.81 0.22 -3.54 16 21 H 0.45 1.98 8.96 -182.85 -1.64 0.34 16 22 N -0.28 -3.22 12.64 34.58 0.44 -2.78 16 23 C 0.18 2.25 6.96 -80.56 -0.56 1.69 16 24 C -0.08 -1.07 5.74 -104.77 -0.60 -1.67 16 25 C -0.05 -0.49 9.92 -38.93 -0.39 -0.88 16 26 C -0.19 -1.76 10.10 -39.49 -0.40 -2.16 16 27 C 0.11 1.14 11.17 -17.49 -0.20 0.94 16 28 N -0.49 -6.65 10.35 -12.96 -0.13 -6.79 16 29 C 0.17 2.34 8.96 -17.18 -0.15 2.18 16 30 C 0.12 2.53 4.55 -2.90 -0.01 2.51 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 4.34 7.36 -40.82 -0.30 4.04 16 39 H 0.19 1.00 7.48 -52.49 -0.39 0.60 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.18 2.55 5.68 -52.49 -0.30 2.25 16 44 H 0.02 0.46 3.55 -51.93 -0.18 0.27 16 45 H 0.04 0.95 7.73 -51.93 -0.40 0.55 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -36.29 369.14 -9.08 -45.37 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.02 Total: 3.38 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.96 Total: 1.36 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.42 Total: -64.47 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.07 Total: -8.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.15 Total: 17.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.29 -9.08 -45.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028873909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.352 kcal (2) G-P(sol) polarization free energy of solvation -36.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds