Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99733 * 2 1 4 4 H 1.48497 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47113 * 300.00522 * 3 2 1 6 6 H 1.48499 * 109.47168 * 60.00360 * 3 2 1 7 7 C 1.38807 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64534 * 0.04775 * 9 7 2 11 11 C 1.54910 * 104.83294 * 204.08993 * 10 9 7 12 12 C 1.55160 * 101.58272 * 322.98935 * 11 10 9 13 13 H 1.08998 * 110.87028 * 277.06860 * 12 11 10 14 14 C 1.52998 * 110.72195 * 153.86152 * 12 11 10 15 15 N 1.46496 * 109.46882 * 180.02562 * 14 12 11 16 16 C 1.34782 * 120.00018 * 179.97438 * 15 14 12 17 17 O 1.21579 * 119.99529 * 0.02562 * 16 15 14 18 18 C 1.47686 * 120.00170 * 180.02562 * 16 15 14 19 19 C 1.39698 * 120.07701 * 180.02562 * 18 16 15 20 20 C 1.37740 * 119.91654 * 179.97438 * 19 18 16 21 21 C 1.39027 * 120.08201 * 359.97438 * 20 19 18 22 22 N 1.39935 * 119.91987 * 180.02562 * 21 20 19 23 23 C 1.36311 * 126.86082 * 179.71276 * 22 21 20 24 24 C 1.34968 * 106.77429 * 179.84879 * 23 22 21 25 25 N 1.33375 * 109.01421 * 0.42439 * 24 23 22 26 26 N 1.28758 * 109.93014 * 359.73096 * 25 24 23 27 27 C 1.39030 * 120.15970 * 0.29521 * 21 20 19 28 28 C 1.37745 * 120.07454 * 359.45265 * 27 21 20 29 29 C 1.47016 * 125.65170 * 180.02562 * 9 7 2 30 30 H 0.96996 * 119.99981 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.36894 * 322.93074 * 10 9 7 32 32 H 1.09003 * 110.36907 * 85.14256 * 10 9 7 33 33 H 1.09004 * 111.00840 * 204.91812 * 11 10 9 34 34 H 1.08995 * 111.00589 * 81.06405 * 11 10 9 35 35 H 1.09000 * 109.47003 * 60.02803 * 14 12 11 36 36 H 1.09001 * 109.46795 * 300.02673 * 14 12 11 37 37 H 0.96996 * 120.00506 * 0.02562 * 15 14 12 38 38 H 1.08003 * 120.03875 * 359.95675 * 19 18 16 39 39 H 1.08001 * 119.95947 * 180.02562 * 20 19 18 40 40 H 1.07995 * 126.61412 * 359.95960 * 23 22 21 41 41 H 1.07997 * 125.49281 * 180.13862 * 24 23 22 42 42 H 1.07998 * 119.95993 * 179.71917 * 27 21 20 43 43 H 1.08003 * 120.03980 * 180.25279 * 28 27 21 44 44 H 1.09003 * 109.88274 * 59.56215 * 29 9 7 45 45 H 1.09000 * 110.01562 * 298.47177 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 -0.0010 11 6 -0.4017 -3.9325 0.6104 12 6 0.7785 -4.7525 0.0254 13 1 0.5483 -5.1001 -0.9817 14 6 1.1231 -5.9316 0.9375 15 7 2.2390 -6.6853 0.3606 16 6 2.7172 -7.7735 0.9960 17 8 2.2221 -8.1299 2.0476 18 6 3.8426 -8.5330 0.4147 19 6 4.3391 -9.6615 1.0717 20 6 5.3884 -10.3677 0.5263 21 6 5.9530 -9.9590 -0.6766 22 7 7.0186 -10.6793 -1.2279 23 6 7.6708 -10.4104 -2.3942 24 6 8.6257 -11.3540 -2.5331 25 7 8.5659 -12.1888 -1.4946 26 7 7.6254 -11.8262 -0.6935 27 6 5.4651 -8.8332 -1.3304 28 6 4.4126 -8.1251 -0.7936 29 6 1.9319 -3.7274 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5994 -1.7590 0.6146 32 1 -0.5271 -2.4846 -1.0193 33 1 -1.3589 -4.3329 0.2765 34 1 -0.3523 -3.8987 1.6987 35 1 0.2547 -6.5836 1.0321 36 1 1.4066 -5.5588 1.9217 37 1 2.6343 -6.4008 -0.4782 38 1 3.9009 -9.9796 2.0061 39 1 5.7726 -11.2405 1.0334 40 1 7.4645 -9.5978 -3.0750 41 1 9.3226 -11.4247 -3.3551 42 1 5.9091 -8.5160 -2.2624 43 1 4.0314 -7.2530 -1.3040 44 1 2.5579 -3.8510 0.8832 45 1 2.5305 -3.8660 -0.9008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028924609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = 123.702173 kcal Electronic energy + Delta-G solvation = -27779.110846 eV Core-core repulsion = 23799.855381 eV Total energy + Delta-G solvation = -3979.255465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.69160 -40.53962 -38.96866 -37.68261 -34.95106 -34.83212 -32.70000 -31.94669 -31.12188 -30.57683 -29.66314 -28.25553 -25.93979 -25.08740 -23.99711 -23.53627 -22.35690 -21.65164 -20.85042 -20.07240 -19.80339 -19.14382 -17.99715 -16.89049 -16.39633 -16.35241 -15.85437 -15.70148 -15.39142 -15.10691 -14.82561 -14.72522 -14.57067 -14.19251 -13.97434 -13.64470 -13.55484 -13.12200 -12.88795 -12.58471 -12.41482 -11.86894 -11.79142 -11.72720 -11.61395 -11.55554 -11.50507 -11.00942 -10.86807 -10.55513 -10.23740 -10.09318 -10.04851 -9.94876 -9.84703 -9.69952 -9.58256 -9.19013 -8.91807 -8.71018 -6.89758 -5.71323 -3.13292 -0.22805 0.70329 1.11853 1.57507 2.04247 2.54854 2.99826 3.35368 3.38605 3.40881 3.43413 3.80728 3.91853 4.19569 4.30756 4.39712 4.44342 4.51510 4.62861 4.70695 4.90470 5.00652 5.02644 5.17304 5.32038 5.33787 5.43920 5.46475 5.54423 5.61746 5.70464 5.80115 5.81801 5.93323 5.98559 6.02950 6.26294 6.29104 6.32959 6.46171 6.51899 6.63225 6.82161 7.36129 7.45277 7.57085 7.60491 7.80006 8.03721 8.30658 9.16175 9.77134 10.41411 11.32638 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.001966 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.652413 B =14241.932109 C =15581.359578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.554 3.446 17 O -0.536 6.536 18 C -0.126 4.126 19 C -0.037 4.037 20 C -0.115 4.115 21 C 0.158 3.842 22 N -0.320 5.320 23 C 0.024 3.976 24 C -0.072 4.072 25 N -0.231 5.231 26 N -0.061 5.061 27 C -0.133 4.133 28 C -0.061 4.061 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.107 0.893 32 H 0.012 0.988 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.401 0.599 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.198 0.802 41 H 0.192 0.808 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.024 0.976 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.328 -20.562 -5.874 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.026 3.974 11 C -0.174 4.174 12 C -0.135 4.135 13 H 0.095 0.905 14 C 0.009 3.991 15 N -0.368 5.368 16 C 0.341 3.659 17 O -0.414 6.414 18 C -0.130 4.130 19 C -0.057 4.057 20 C -0.135 4.135 21 C 0.065 3.935 22 N -0.101 5.101 23 C -0.125 4.125 24 C -0.226 4.226 25 N -0.100 5.100 26 N -0.038 5.038 27 C -0.154 4.154 28 C -0.080 4.080 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.169 0.831 39 H 0.165 0.835 40 H 0.215 0.785 41 H 0.209 0.791 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.042 0.958 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.979 -21.604 -3.982 24.128 hybrid contribution 0.683 1.845 -1.504 2.477 sum 10.662 -19.759 -5.486 23.112 Atomic orbital electron populations 1.69803 1.04889 1.24725 1.57579 1.24802 0.95753 0.97780 1.02380 0.85999 0.78626 0.83571 0.77290 1.20547 1.21739 1.21684 1.19109 0.90503 0.82457 1.43102 0.90489 1.44499 1.01990 0.99687 1.86830 1.21942 0.84656 0.92524 0.98253 1.23008 0.95493 0.98535 1.00373 1.22464 0.98452 0.93955 0.98622 0.90512 1.21527 0.87993 0.92212 0.97413 1.46011 1.36162 1.28204 1.26436 1.18096 0.82725 0.80631 0.84484 1.90800 1.59833 1.68370 1.22369 1.20201 0.98442 0.97892 0.96445 1.21234 0.93118 0.91925 0.99394 1.20927 0.96898 1.01634 0.94077 1.17774 0.88078 0.92654 0.94990 1.48052 1.24145 1.21517 1.16435 1.23641 0.95641 1.02828 0.90406 1.23311 1.03321 0.95013 1.01004 1.74366 1.11231 1.22124 1.02310 1.82158 1.06326 0.97022 1.18338 1.20795 0.98668 0.94525 1.01363 1.21217 0.94023 0.98711 0.94085 1.21324 0.93456 0.86082 0.97658 0.93728 0.87500 0.96951 0.92046 0.91755 0.91315 0.90909 0.76404 0.83149 0.83518 0.78494 0.79101 0.84199 0.83947 0.95788 0.96531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.09 55.49 0.56 -25.72 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 8 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.60 -14.83 3.39 -170.07 -0.58 -15.41 16 10 C 0.15 3.51 5.89 -2.53 -0.01 3.49 16 11 C -0.13 -2.36 6.53 -24.58 -0.16 -2.53 16 12 C -0.12 -1.77 3.02 -88.78 -0.27 -2.04 16 13 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 14 C 0.13 1.77 4.99 -4.04 -0.02 1.75 16 15 N -0.72 -8.21 5.35 -61.30 -0.33 -8.54 16 16 C 0.55 6.87 7.77 -12.40 -0.10 6.77 16 17 O -0.54 -8.54 16.34 5.30 0.09 -8.45 16 18 C -0.13 -1.20 5.87 -104.95 -0.62 -1.82 16 19 C -0.04 -0.34 9.58 -39.22 -0.38 -0.71 16 20 C -0.12 -0.98 9.66 -39.47 -0.38 -1.36 16 21 C 0.16 1.28 6.70 -83.57 -0.56 0.72 16 22 N -0.32 -2.77 3.85 -10.50 -0.04 -2.81 16 23 C 0.02 0.14 10.92 -16.72 -0.18 -0.04 16 24 C -0.07 -0.48 11.86 -18.04 -0.21 -0.70 16 25 N -0.23 -2.42 12.33 30.09 0.37 -2.05 16 26 N -0.06 -0.67 13.15 60.35 0.79 0.12 16 27 C -0.13 -0.83 9.46 -39.47 -0.37 -1.20 16 28 C -0.06 -0.43 9.53 -39.22 -0.37 -0.80 16 29 C 0.14 2.68 6.52 -3.06 -0.02 2.66 16 30 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 31 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 37 H 0.40 3.67 6.35 -40.82 -0.26 3.41 16 38 H 0.15 1.34 7.64 -52.48 -0.40 0.94 16 39 H 0.15 1.18 7.72 -52.49 -0.41 0.77 16 40 H 0.20 0.29 7.16 -52.49 -0.38 -0.09 16 41 H 0.19 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 0.46 6.82 -52.49 -0.36 0.10 16 43 H 0.14 0.72 6.39 -52.48 -0.34 0.38 16 44 H 0.02 0.47 7.76 -51.93 -0.40 0.07 16 45 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 376.19 15.07 5.67 5.67 Total: -1.00 -34.57 376.19 -8.16 -42.73 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.76 Total: 0.30 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.91 Total: -2.43 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.78 Total: -54.40 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.09 Total: -8.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.57 -8.16 -42.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028924609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.430 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds