Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99733 * 2 1 4 4 H 1.48497 * 109.46875 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47113 * 300.00522 * 3 2 1 6 6 H 1.48499 * 109.47168 * 60.00360 * 3 2 1 7 7 C 1.38807 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00350 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64534 * 0.04775 * 9 7 2 11 11 C 1.54910 * 104.83294 * 204.08993 * 10 9 7 12 12 C 1.55160 * 101.58272 * 322.98935 * 11 10 9 13 13 H 1.08998 * 110.87028 * 277.06860 * 12 11 10 14 14 C 1.52998 * 110.72195 * 153.86152 * 12 11 10 15 15 N 1.46496 * 109.46882 * 180.02562 * 14 12 11 16 16 C 1.34782 * 120.00018 * 179.97438 * 15 14 12 17 17 O 1.21579 * 119.99529 * 0.02562 * 16 15 14 18 18 C 1.47686 * 120.00170 * 180.02562 * 16 15 14 19 19 C 1.39698 * 120.07701 * 180.02562 * 18 16 15 20 20 C 1.37740 * 119.91654 * 179.97438 * 19 18 16 21 21 C 1.39027 * 120.08201 * 359.97438 * 20 19 18 22 22 N 1.39935 * 119.91987 * 180.02562 * 21 20 19 23 23 C 1.36311 * 126.86082 * 179.71276 * 22 21 20 24 24 C 1.34968 * 106.77429 * 179.84879 * 23 22 21 25 25 N 1.33375 * 109.01421 * 0.42439 * 24 23 22 26 26 N 1.28758 * 109.93014 * 359.73096 * 25 24 23 27 27 C 1.39030 * 120.15970 * 0.29521 * 21 20 19 28 28 C 1.37745 * 120.07454 * 359.45265 * 27 21 20 29 29 C 1.47016 * 125.65170 * 180.02562 * 9 7 2 30 30 H 0.96996 * 119.99981 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.36894 * 322.93074 * 10 9 7 32 32 H 1.09003 * 110.36907 * 85.14256 * 10 9 7 33 33 H 1.09004 * 111.00840 * 204.91812 * 11 10 9 34 34 H 1.08995 * 111.00589 * 81.06405 * 11 10 9 35 35 H 1.09000 * 109.47003 * 60.02803 * 14 12 11 36 36 H 1.09001 * 109.46795 * 300.02673 * 14 12 11 37 37 H 0.96996 * 120.00506 * 0.02562 * 15 14 12 38 38 H 1.08003 * 120.03875 * 359.95675 * 19 18 16 39 39 H 1.08001 * 119.95947 * 180.02562 * 20 19 18 40 40 H 1.07995 * 126.61412 * 359.95960 * 23 22 21 41 41 H 1.07997 * 125.49281 * 180.13862 * 24 23 22 42 42 H 1.07998 * 119.95993 * 179.71917 * 27 21 20 43 43 H 1.08003 * 120.03980 * 180.25279 * 28 27 21 44 44 H 1.09003 * 109.88274 * 59.56215 * 29 9 7 45 45 H 1.09000 * 110.01562 * 298.47177 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 -0.0010 11 6 -0.4017 -3.9325 0.6104 12 6 0.7785 -4.7525 0.0254 13 1 0.5483 -5.1001 -0.9817 14 6 1.1231 -5.9316 0.9375 15 7 2.2390 -6.6853 0.3606 16 6 2.7172 -7.7735 0.9960 17 8 2.2221 -8.1299 2.0476 18 6 3.8426 -8.5330 0.4147 19 6 4.3391 -9.6615 1.0717 20 6 5.3884 -10.3677 0.5263 21 6 5.9530 -9.9590 -0.6766 22 7 7.0186 -10.6793 -1.2279 23 6 7.6708 -10.4104 -2.3942 24 6 8.6257 -11.3540 -2.5331 25 7 8.5659 -12.1888 -1.4946 26 7 7.6254 -11.8262 -0.6935 27 6 5.4651 -8.8332 -1.3304 28 6 4.4126 -8.1251 -0.7936 29 6 1.9319 -3.7274 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5994 -1.7590 0.6146 32 1 -0.5271 -2.4846 -1.0193 33 1 -1.3589 -4.3329 0.2765 34 1 -0.3523 -3.8987 1.6987 35 1 0.2547 -6.5836 1.0321 36 1 1.4066 -5.5588 1.9217 37 1 2.6343 -6.4008 -0.4782 38 1 3.9009 -9.9796 2.0061 39 1 5.7726 -11.2405 1.0334 40 1 7.4645 -9.5978 -3.0750 41 1 9.3226 -11.4247 -3.3551 42 1 5.9091 -8.5160 -2.2624 43 1 4.0314 -7.2530 -1.3040 44 1 2.5579 -3.8510 0.8832 45 1 2.5305 -3.8660 -0.9008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028924609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = 100.690300 kcal Electronic energy + Delta-G solvation = -27780.108715 eV Core-core repulsion = 23799.855381 eV Total energy + Delta-G solvation = -3980.253334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.24834 -41.36580 -39.84922 -39.09786 -36.13701 -35.57563 -34.34539 -32.63015 -31.77587 -31.65183 -30.91138 -29.67748 -27.38561 -26.16056 -24.99723 -24.42389 -23.13555 -22.21204 -22.13657 -21.40286 -21.08188 -19.71925 -19.04762 -18.61584 -17.38090 -16.96955 -16.92759 -16.62064 -16.35572 -16.06018 -15.99573 -15.72477 -15.44414 -15.29762 -14.81535 -14.56694 -14.47313 -14.24325 -14.01030 -13.84058 -13.52880 -13.35007 -13.11855 -12.97557 -12.79748 -12.69333 -12.30951 -12.20693 -12.14379 -11.96878 -11.89986 -11.80190 -11.56586 -11.36818 -11.06623 -10.73102 -10.47764 -10.26733 -10.17812 -9.59369 -8.85411 -7.76068 -5.19654 -0.84701 0.14087 0.50801 1.05358 1.47667 1.48452 1.52663 1.58370 1.76526 2.07103 2.50616 2.67601 3.26984 3.33927 3.50176 3.58921 3.65915 3.70840 3.81890 3.87157 4.00328 4.03933 4.08902 4.13098 4.23308 4.37855 4.47267 4.48148 4.67271 4.72092 4.79825 4.81773 4.90202 4.94803 5.05356 5.07832 5.11614 5.15978 5.24705 5.31841 5.38901 5.43649 5.50756 5.69056 5.77663 5.85677 6.34287 6.47757 7.03646 7.12703 7.13310 7.81686 8.44573 9.25907 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015607 B = 0.001966 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.652413 B =14241.932109 C =15581.359578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.628 5.628 10 C 0.151 3.849 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.101 0.899 14 C 0.143 3.857 15 N -0.707 5.707 16 C 0.555 3.445 17 O -0.579 6.579 18 C -0.141 4.141 19 C -0.045 4.045 20 C -0.124 4.124 21 C 0.152 3.848 22 N -0.326 5.326 23 C 0.041 3.959 24 C -0.080 4.080 25 N -0.264 5.264 26 N -0.111 5.111 27 C -0.118 4.118 28 C -0.051 4.051 29 C 0.136 3.864 30 H 0.246 0.754 31 H 0.068 0.932 32 H -0.008 1.008 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.414 0.586 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.247 0.753 41 H 0.224 0.776 42 H 0.181 0.819 43 H 0.169 0.831 44 H 0.020 0.980 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.787 -20.768 -8.418 25.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.354 5.354 10 C 0.026 3.974 11 C -0.163 4.163 12 C -0.113 4.113 13 H 0.119 0.881 14 C 0.019 3.981 15 N -0.359 5.359 16 C 0.343 3.657 17 O -0.460 6.460 18 C -0.145 4.145 19 C -0.064 4.064 20 C -0.144 4.144 21 C 0.059 3.941 22 N -0.108 5.108 23 C -0.108 4.108 24 C -0.235 4.235 25 N -0.132 5.132 26 N -0.087 5.087 27 C -0.139 4.139 28 C -0.070 4.070 29 C 0.011 3.989 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.010 0.990 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.252 0.748 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.263 0.737 41 H 0.241 0.759 42 H 0.199 0.801 43 H 0.187 0.813 44 H 0.038 0.962 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.472 -21.854 -6.532 25.532 hybrid contribution 0.298 1.893 -0.788 2.072 sum 11.770 -19.961 -7.320 24.302 Atomic orbital electron populations 1.70064 1.06162 1.24829 1.58868 1.25623 0.96637 1.00972 1.03044 0.85014 0.78175 0.79564 0.76611 1.19021 1.21956 1.22190 1.19482 0.91022 0.83827 1.41999 0.90069 1.44819 1.02789 1.01062 1.86768 1.21729 0.84163 0.94851 0.96679 1.22846 0.97935 0.95520 0.99956 1.22303 0.95699 0.93198 1.00080 0.88097 1.21254 0.89045 0.91751 0.96072 1.45837 1.35574 1.27693 1.26797 1.18479 0.82877 0.80469 0.83841 1.90780 1.61364 1.69527 1.24351 1.20035 0.98378 0.98140 0.97929 1.21160 0.93534 0.92346 0.99373 1.20890 0.97031 1.01663 0.94857 1.18014 0.87991 0.93202 0.94907 1.48187 1.24226 1.21152 1.17270 1.24518 0.93877 1.03064 0.89377 1.24013 1.04157 0.94485 1.00885 1.74334 1.11657 1.23589 1.03651 1.82148 1.07852 0.98982 1.19762 1.21178 0.97634 0.92885 1.02171 1.21486 0.93584 0.99160 0.92786 1.21531 0.94760 0.84517 0.98074 0.94452 0.91360 0.99013 0.89250 0.92086 0.90377 0.92774 0.74768 0.84141 0.84133 0.73664 0.75941 0.80130 0.81321 0.96171 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.55 10.09 21.65 0.22 -55.34 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 44.67 29.55 68.60 2.03 46.70 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 7 C -0.23 -12.67 10.27 84.03 0.86 -11.81 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.63 -30.64 3.39 -691.99 -2.35 -32.99 16 10 C 0.15 7.06 5.89 86.86 0.51 7.57 16 11 C -0.12 -4.15 6.53 31.99 0.21 -3.95 16 12 C -0.09 -2.62 3.02 -9.60 -0.03 -2.65 16 13 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 14 C 0.14 3.53 4.99 86.38 0.43 3.96 16 15 N -0.71 -14.35 5.35 -466.12 -2.49 -16.84 16 16 C 0.56 13.03 7.77 86.74 0.67 13.71 16 17 O -0.58 -18.47 16.34 -3.96 -0.06 -18.53 16 18 C -0.14 -2.47 5.87 -20.08 -0.12 -2.58 16 19 C -0.04 -0.81 9.58 22.50 0.22 -0.59 16 20 C -0.12 -2.09 9.66 22.34 0.22 -1.87 16 21 C 0.15 2.13 6.70 38.23 0.26 2.39 16 22 N -0.33 -4.98 3.85 -187.13 -0.72 -5.70 16 23 C 0.04 0.32 10.92 83.24 0.91 1.23 16 24 C -0.08 -0.87 11.86 83.71 0.99 0.13 16 25 N -0.26 -5.39 12.33 -58.72 -0.72 -6.11 16 26 N -0.11 -2.44 13.15 37.02 0.49 -1.95 16 27 C -0.12 -0.96 9.46 22.34 0.21 -0.75 16 28 C -0.05 -0.53 9.53 22.50 0.21 -0.31 16 29 C 0.14 4.90 6.52 86.73 0.57 5.47 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.07 3.74 5.87 -2.39 -0.01 3.73 16 32 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.06 2.09 8.05 -2.39 -0.02 2.07 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.05 1.58 8.06 -2.39 -0.02 1.56 16 37 H 0.41 5.97 6.35 -92.71 -0.59 5.38 16 38 H 0.14 2.72 7.64 -2.91 -0.02 2.69 16 39 H 0.14 2.44 7.72 -2.91 -0.02 2.42 16 40 H 0.25 -0.88 7.16 -2.91 -0.02 -0.90 16 41 H 0.22 0.61 8.06 -2.91 -0.02 0.59 16 42 H 0.18 -0.04 6.82 -2.91 -0.02 -0.06 16 43 H 0.17 0.82 6.39 -2.91 -0.02 0.80 16 44 H 0.02 0.75 7.76 -2.39 -0.02 0.73 16 45 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -80.01 376.19 3.41 -76.60 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 0.44 Total: 7.67 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.59 Total: 6.49 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -5.58 Total: -118.93 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.06 Total: -18.53 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -80.01 3.41 -76.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028924609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.285 kcal (2) G-P(sol) polarization free energy of solvation -80.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds