Wall clock time and date at job start Sat Apr 11 2020 06:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00379 * 2 1 4 4 H 1.48500 * 109.46916 * 269.99793 * 3 2 1 5 5 H 1.48501 * 109.47046 * 29.99467 * 3 2 1 6 6 H 1.48500 * 109.47407 * 149.99613 * 3 2 1 7 7 C 1.38817 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.65114 * 0.02562 * 9 7 2 11 11 C 1.54324 * 107.27615 * 178.92484 * 10 9 7 12 12 C 1.55157 * 102.93736 * 337.80816 * 11 10 9 13 13 H 1.09004 * 111.00253 * 277.39186 * 12 11 10 14 14 C 1.53002 * 111.00626 * 153.57996 * 12 11 10 15 15 N 1.46494 * 109.47466 * 174.99631 * 14 12 11 16 16 C 1.34781 * 120.00178 * 179.97438 * 15 14 12 17 17 O 1.21549 * 119.99607 * 0.02562 * 16 15 14 18 18 C 1.47853 * 119.99791 * 180.02562 * 16 15 14 19 19 C 1.39619 * 120.11912 * 0.02562 * 18 16 15 20 20 C 1.37971 * 119.98923 * 180.02562 * 19 18 16 21 21 C 1.38270 * 120.21324 * 0.02562 * 20 19 18 22 22 C 1.38903 * 120.22949 * 359.97438 * 21 20 19 23 23 N 1.40269 * 119.99511 * 179.97438 * 22 21 20 24 24 C 1.36113 * 125.94066 * 5.24394 * 23 22 21 25 25 C 1.35372 * 106.05066 * 180.13699 * 24 23 22 26 26 N 1.33782 * 106.53660 * 359.64515 * 25 24 23 27 27 N 1.28604 * 109.05744 * 0.23267 * 26 25 24 28 28 C 1.38584 * 120.01048 * 0.26478 * 22 21 20 29 29 C 1.47426 * 125.64867 * 180.02562 * 9 7 2 30 30 H 0.96998 * 119.99463 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88392 * 59.50239 * 10 9 7 32 32 H 1.09004 * 109.88113 * 298.34045 * 10 9 7 33 33 H 1.08992 * 110.71880 * 219.44279 * 11 10 9 34 34 H 1.08998 * 110.87286 * 96.23356 * 11 10 9 35 35 H 1.08997 * 109.46977 * 54.99311 * 14 12 11 36 36 H 1.09004 * 109.46682 * 294.99344 * 14 12 11 37 37 H 0.96999 * 119.99753 * 0.02562 * 15 14 12 38 38 H 1.08006 * 120.00183 * 359.97438 * 19 18 16 39 39 H 1.07992 * 119.89647 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.88535 * 179.97438 * 21 20 19 41 41 H 1.08001 * 126.97712 * 0.02562 * 24 23 22 42 42 H 1.08002 * 126.73483 * 179.91731 * 25 24 23 43 43 H 1.08006 * 120.10670 * 179.74000 * 28 22 21 44 44 H 1.08996 * 110.36990 * 85.30418 * 29 9 7 45 45 H 1.09000 * 110.36181 * 322.98246 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4486 -4.0441 -0.0277 12 6 0.8522 -4.6560 -0.6116 13 1 0.8576 -4.5966 -1.7000 14 6 1.0368 -6.1009 -0.1433 15 7 2.2062 -6.6834 -0.8061 16 6 2.5644 -7.9562 -0.5449 17 8 1.9169 -8.6209 0.2402 18 6 3.7450 -8.5439 -1.2135 19 6 4.4908 -7.7824 -2.1153 20 6 5.5917 -8.3336 -2.7381 21 6 5.9598 -9.6397 -2.4727 22 6 5.2243 -10.4054 -1.5771 23 7 5.6019 -11.7301 -1.3119 24 6 6.7171 -12.3524 -1.7827 25 6 6.6819 -13.6107 -1.2847 26 7 5.5731 -13.6950 -0.5409 27 7 4.9564 -12.5671 -0.5772 28 6 4.1139 -9.8628 -0.9500 29 6 1.9333 -3.7312 0.0016 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5570 -2.0520 -0.8843 32 1 -0.5551 -2.0846 0.9012 33 1 -1.2982 -4.2513 -0.6784 34 1 -0.6341 -4.4206 0.9782 35 1 0.1494 -6.6810 -0.3961 36 1 1.1858 -6.1166 0.9364 37 1 2.7231 -6.1528 -1.4323 38 1 4.2055 -6.7622 -2.3260 39 1 6.1677 -7.7432 -3.4350 40 1 6.8223 -10.0661 -2.9635 41 1 7.4751 -11.9290 -2.4249 42 1 7.4089 -14.3919 -1.4512 43 1 3.5385 -10.4581 -0.2565 44 1 2.1651 -4.0419 1.0203 45 1 2.8335 -3.7406 -0.6129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029021902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:39 Heat of formation + Delta-G solvation = 127.255839 kcal Electronic energy + Delta-G solvation = -27883.325826 eV Core-core repulsion = 23904.224460 eV Total energy + Delta-G solvation = -3979.101366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.85252 -40.59835 -38.99523 -37.66223 -35.19823 -34.75687 -32.65848 -32.18687 -31.27552 -30.59598 -29.71807 -28.32414 -25.85579 -24.90984 -24.61751 -23.49998 -22.55270 -21.80431 -20.79734 -20.05383 -20.02631 -19.03833 -17.23621 -16.98621 -16.92136 -16.67934 -16.38780 -15.60503 -15.52314 -15.18020 -14.81001 -14.67111 -14.56009 -14.32977 -13.91708 -13.63558 -13.53192 -13.03750 -12.63229 -12.41214 -12.40112 -12.07893 -11.87297 -11.80871 -11.50101 -11.44031 -11.40922 -10.95039 -10.83827 -10.51867 -10.24818 -10.11280 -9.96194 -9.92667 -9.87336 -9.70567 -9.69642 -9.22806 -9.07752 -8.64466 -6.88055 -5.75638 -3.09439 -0.03757 0.39627 1.42054 1.73612 2.11976 2.51476 2.95604 3.33638 3.36068 3.41227 3.43486 3.82775 3.99664 4.15165 4.42033 4.42904 4.43930 4.45653 4.62069 4.73089 4.78526 5.02880 5.05756 5.15530 5.26049 5.35703 5.49676 5.52859 5.59567 5.63627 5.65582 5.72166 5.82747 5.91780 5.97859 5.99673 6.27678 6.29799 6.32095 6.42947 6.48415 6.61514 6.84500 7.34821 7.51383 7.59009 7.78455 8.00686 8.02315 8.21609 9.17565 9.77988 10.43812 11.36024 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022838 B = 0.001881 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.752685 B =14881.417079 C =15772.648099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.131 3.869 15 N -0.715 5.715 16 C 0.554 3.446 17 O -0.531 6.531 18 C -0.108 4.108 19 C -0.075 4.075 20 C -0.102 4.102 21 C -0.096 4.096 22 C 0.110 3.890 23 N -0.241 5.241 24 C -0.050 4.050 25 C -0.044 4.044 26 N -0.263 5.263 27 N -0.073 5.073 28 C -0.043 4.043 29 C 0.142 3.858 30 H 0.252 0.748 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.157 0.843 44 H 0.020 0.980 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.587 -21.130 -9.042 26.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.008 3.992 15 N -0.367 5.367 16 C 0.340 3.660 17 O -0.408 6.408 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.117 4.117 22 C 0.019 3.981 23 N -0.029 5.029 24 C -0.198 4.198 25 C -0.200 4.200 26 N -0.129 5.129 27 N -0.052 5.052 28 C -0.064 4.064 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.237 0.763 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.212 0.788 42 H 0.213 0.787 43 H 0.174 0.826 44 H 0.037 0.963 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.806 -21.637 -7.548 25.779 hybrid contribution 1.769 1.426 -1.075 2.514 sum 13.575 -20.211 -8.623 25.829 Atomic orbital electron populations 1.69962 1.04882 1.25071 1.56924 1.24816 0.95738 0.97712 1.02217 0.86119 0.78593 0.83500 0.77534 1.21617 1.21645 1.20714 1.19041 0.90390 0.82427 1.43976 0.90494 1.44475 1.01732 0.99831 1.87205 1.21153 0.84307 0.88145 1.01167 1.22860 0.95341 0.99390 0.99782 1.22633 0.98797 0.91842 1.00532 0.90153 1.21492 0.86872 0.93303 0.97520 1.45985 1.31456 1.12724 1.46505 1.18040 0.83939 0.82036 0.81986 1.90816 1.53989 1.60795 1.35248 1.19921 0.97477 0.94181 0.99597 1.21621 0.93917 1.00169 0.93764 1.21011 0.96977 0.94050 0.99987 1.21085 0.99558 0.94574 0.96435 1.17494 0.98475 0.80705 1.01387 1.44770 1.16238 1.09974 1.31929 1.23856 0.94113 0.95005 1.06847 1.23703 0.98956 0.97063 1.00234 1.75172 1.06323 1.13431 1.17954 1.78480 1.19695 0.94934 1.12051 1.21057 0.93682 0.94406 0.97267 1.21591 0.93878 0.86219 0.96771 0.93718 0.93514 0.93858 0.91925 0.92122 0.91266 0.90944 0.76308 0.84097 0.83538 0.84260 0.78816 0.78705 0.82557 0.96259 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.60 10.31 55.49 0.57 -26.03 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.61 -14.88 3.39 -170.06 -0.58 -15.46 16 10 C 0.18 4.15 5.37 -3.06 -0.02 4.13 16 11 C -0.13 -2.35 6.42 -24.90 -0.16 -2.51 16 12 C -0.12 -1.83 3.05 -88.46 -0.27 -2.10 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 14 C 0.13 1.76 5.13 -4.04 -0.02 1.74 16 15 N -0.72 -8.24 5.45 -61.25 -0.33 -8.58 16 16 C 0.55 7.09 7.77 -12.32 -0.10 7.00 16 17 O -0.53 -8.83 16.34 5.32 0.09 -8.75 16 18 C -0.11 -1.08 5.87 -104.99 -0.62 -1.69 16 19 C -0.08 -0.51 9.54 -39.16 -0.37 -0.89 16 20 C -0.10 -0.51 10.02 -39.67 -0.40 -0.90 16 21 C -0.10 -0.52 9.45 -39.32 -0.37 -0.90 16 22 C 0.11 0.97 6.66 -83.62 -0.56 0.41 16 23 N -0.24 -2.34 3.56 -10.50 -0.04 -2.38 16 24 C -0.05 -0.33 10.91 -16.67 -0.18 -0.51 16 25 C -0.04 -0.33 12.05 -17.72 -0.21 -0.55 16 26 N -0.26 -3.13 12.40 30.24 0.37 -2.76 16 27 N -0.07 -0.92 12.42 60.35 0.75 -0.18 16 28 C -0.04 -0.46 9.16 -39.00 -0.36 -0.82 16 29 C 0.14 2.69 6.65 -2.52 -0.02 2.67 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 32 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 37 H 0.40 3.67 6.50 -40.82 -0.27 3.40 16 38 H 0.14 0.69 6.40 -52.48 -0.34 0.36 16 39 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 40 H 0.14 0.33 6.78 -52.49 -0.36 -0.03 16 41 H 0.19 0.36 7.13 -52.49 -0.37 -0.02 16 42 H 0.20 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.16 1.96 7.29 -52.48 -0.38 1.58 16 44 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -35.70 376.29 -8.23 -43.93 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.81 Total: -0.47 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -3.90 Total: -1.62 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.75 Total: -55.37 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.70 -8.23 -43.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029021902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.184 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds