Wall clock time and date at job start Sat Apr 11 2020 06:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 120.00002 * 2 1 4 4 H 1.48494 * 109.46924 * 264.66596 * 3 2 1 5 5 H 1.48495 * 109.47244 * 24.67225 * 3 2 1 6 6 H 1.48498 * 109.46763 * 144.67060 * 3 2 1 7 7 C 1.38815 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99955 * 336.24522 * 7 2 1 9 9 N 1.36937 * 120.00276 * 156.24265 * 7 2 1 10 10 C 1.47414 * 125.65168 * 162.05254 * 9 7 2 11 11 C 1.54904 * 104.83475 * 155.90466 * 10 9 7 12 12 C 1.55160 * 101.58241 * 37.01229 * 11 10 9 13 13 H 1.08996 * 110.71851 * 83.03462 * 12 11 10 14 14 C 1.52994 * 110.72096 * 206.13458 * 12 11 10 15 15 N 1.46506 * 109.46863 * 182.55979 * 14 12 11 16 16 C 1.34781 * 119.99821 * 180.02562 * 15 14 12 17 17 O 1.21548 * 119.99746 * 359.97438 * 16 15 14 18 18 C 1.47852 * 119.99702 * 179.97438 * 16 15 14 19 19 C 1.39619 * 120.11556 * 359.97438 * 18 16 15 20 20 C 1.37974 * 119.98544 * 180.02562 * 19 18 16 21 21 C 1.38268 * 120.21321 * 0.02562 * 20 19 18 22 22 C 1.38897 * 120.23259 * 0.02562 * 21 20 19 23 23 N 1.40271 * 119.99512 * 179.97438 * 22 21 20 24 24 C 1.36111 * 125.94434 * 4.71315 * 23 22 21 25 25 C 1.35371 * 106.04910 * 179.84546 * 24 23 22 26 26 N 1.33770 * 106.53968 * 0.41154 * 25 24 23 27 27 N 1.28600 * 109.06235 * 359.73188 * 26 25 24 28 28 C 1.38588 * 120.00971 * 359.72170 * 22 21 20 29 29 C 1.47320 * 125.61359 * 342.27873 * 9 7 2 30 30 H 0.97001 * 119.99655 * 359.97438 * 1 2 3 31 31 H 1.09007 * 110.36539 * 37.06990 * 10 9 7 32 32 H 1.08998 * 110.46592 * 274.79372 * 10 9 7 33 33 H 1.08999 * 111.00997 * 278.93700 * 11 10 9 34 34 H 1.09000 * 111.03854 * 155.09728 * 11 10 9 35 35 H 1.08997 * 109.47186 * 62.56259 * 14 12 11 36 36 H 1.08993 * 109.47384 * 302.55236 * 14 12 11 37 37 H 0.96993 * 119.99807 * 359.97438 * 15 14 12 38 38 H 1.08001 * 120.00817 * 0.02890 * 19 18 16 39 39 H 1.07999 * 119.89598 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.88164 * 179.97438 * 21 20 19 41 41 H 1.08002 * 126.97320 * 0.02562 * 24 23 22 42 42 H 1.08009 * 126.72804 * 180.14023 * 25 24 23 43 43 H 1.08003 * 120.10564 * 180.28019 * 28 22 21 44 44 H 1.08995 * 110.06787 * 61.67862 * 29 9 7 45 45 H 1.09011 * 109.84795 * 300.42123 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6104 1.9813 -1.3940 5 1 1.3960 2.6826 0.5844 6 1 3.4869 1.4753 0.8096 7 6 2.0103 -1.2022 0.0005 8 1 1.5389 -2.0976 0.3777 9 7 3.2926 -1.2527 -0.4772 10 6 4.2678 -2.3252 -0.2091 11 6 5.2608 -2.2642 -1.3964 12 6 5.3571 -0.7354 -1.6437 13 1 6.0753 -0.2791 -0.9626 14 6 5.7332 -0.4450 -3.0980 15 7 5.8763 1.0009 -3.2860 16 6 6.2056 1.4937 -4.4964 17 8 6.3844 0.7385 -5.4319 18 6 6.3494 2.9529 -4.6862 19 6 6.1440 3.8225 -3.6134 20 6 6.2784 5.1838 -3.7937 21 6 6.6157 5.6914 -5.0348 22 6 6.8210 4.8346 -6.1085 23 7 7.1625 5.3549 -7.3656 24 6 7.4117 6.6629 -7.6480 25 6 7.7021 6.7117 -8.9693 26 7 7.6098 5.4578 -9.4261 27 7 7.2893 4.6792 -8.4540 28 6 6.6937 3.4653 -5.9368 29 6 3.9270 -0.2413 -1.3404 30 1 -0.4850 0.8401 0.0004 31 1 3.7684 -3.2937 -0.1816 32 1 4.7883 -2.1408 0.7307 33 1 4.8577 -2.7766 -2.2698 34 1 6.2304 -2.6765 -1.1171 35 1 4.9515 -0.8216 -3.7576 36 1 6.6765 -0.9371 -3.3346 37 1 5.7332 1.6034 -2.5395 38 1 5.8801 3.4297 -2.6426 39 1 6.1188 5.8552 -2.9629 40 1 6.7191 6.7580 -5.1700 41 1 7.3860 7.4928 -6.9574 42 1 7.9542 7.5913 -9.5432 43 1 6.8574 2.7973 -6.7696 44 1 3.9678 0.7180 -0.8247 45 1 3.3644 -0.1418 -2.2688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029021903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:43 Heat of formation + Delta-G solvation = 135.221246 kcal Electronic energy + Delta-G solvation = -28440.288323 eV Core-core repulsion = 24461.532363 eV Total energy + Delta-G solvation = -3978.755960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.83252 -40.60742 -39.05729 -37.99040 -35.19530 -34.81105 -32.70030 -32.20363 -31.30752 -30.77335 -30.13094 -28.73960 -26.13285 -24.89202 -24.57272 -23.57919 -22.59931 -21.79052 -20.87111 -20.39145 -20.20260 -19.10394 -17.27026 -16.99433 -16.90182 -16.79344 -16.45586 -16.12410 -15.52614 -15.22053 -15.15424 -14.75036 -14.48307 -14.31307 -13.88170 -13.65816 -13.59055 -13.24670 -12.84509 -12.61617 -12.55440 -12.39637 -12.03652 -11.85158 -11.65686 -11.46161 -11.39642 -11.38147 -11.03804 -10.79634 -10.65371 -10.31001 -10.12036 -9.94466 -9.90610 -9.68190 -9.42598 -9.21916 -9.10971 -8.69673 -7.13356 -6.00885 -3.29279 -0.01931 0.41373 1.43994 1.75383 2.14031 2.51690 2.92716 3.21793 3.34320 3.34608 3.40845 3.84739 4.00638 4.16818 4.42684 4.44716 4.45655 4.46975 4.63775 4.70456 4.75311 4.84018 4.94859 4.99142 5.06435 5.17676 5.28146 5.37762 5.54204 5.55342 5.61889 5.67037 5.72393 5.73846 5.80750 5.93039 5.95913 6.01111 6.20262 6.23397 6.33266 6.37731 6.52685 6.65743 6.72724 7.30308 7.64743 7.99374 8.02793 8.25550 8.77433 9.62756 10.11488 11.15786 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.002481 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.541978 B =11285.288370 C =12307.521331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.019 3.981 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.132 3.868 11 C -0.121 4.121 12 C -0.117 4.117 13 H 0.081 0.919 14 C 0.131 3.869 15 N -0.718 5.718 16 C 0.556 3.444 17 O -0.529 6.529 18 C -0.109 4.109 19 C -0.076 4.076 20 C -0.101 4.101 21 C -0.094 4.094 22 C 0.111 3.889 23 N -0.241 5.241 24 C -0.050 4.050 25 C -0.044 4.044 26 N -0.262 5.262 27 N -0.073 5.073 28 C -0.042 4.042 29 C 0.124 3.876 30 H 0.263 0.737 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.401 0.599 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.140 0.860 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.157 0.843 44 H 0.023 0.977 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.066 14.627 -8.418 24.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.214 1.214 5 H -0.232 1.232 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.111 0.889 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.099 0.901 14 C 0.008 3.992 15 N -0.370 5.370 16 C 0.343 3.657 17 O -0.406 6.406 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.115 4.115 22 C 0.020 3.980 23 N -0.029 5.029 24 C -0.198 4.198 25 C -0.200 4.200 26 N -0.129 5.129 27 N -0.052 5.052 28 C -0.063 4.063 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.158 0.842 41 H 0.212 0.788 42 H 0.213 0.787 43 H 0.175 0.825 44 H 0.040 0.960 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.875 12.751 -9.756 24.026 hybrid contribution 0.294 2.618 1.104 2.857 sum 18.169 15.369 -8.652 25.321 Atomic orbital electron populations 1.69861 1.05531 1.26566 1.52965 1.24977 0.95157 0.97391 1.00385 0.86880 0.78959 0.84987 0.77368 1.21362 1.23229 1.20689 1.18681 0.85224 0.95683 1.37330 0.88912 1.44850 1.10890 1.22204 1.55712 1.21615 0.90136 0.93118 0.94447 1.22732 0.99563 0.93655 1.00042 1.22474 0.98280 0.98256 0.94633 0.90095 1.21503 1.01984 0.79094 0.96595 1.45967 1.70272 1.09422 1.11326 1.18017 0.77426 0.87217 0.83089 1.90811 1.50096 1.59334 1.40398 1.19894 1.03535 0.93967 0.93842 1.21620 0.95639 0.93559 0.98724 1.21014 0.98944 0.95289 0.96739 1.21082 0.99098 0.99815 0.91541 1.17483 1.05567 0.93367 0.81629 1.44767 1.43788 1.06508 1.07840 1.23856 1.08780 0.87770 0.99386 1.23698 1.06128 0.97321 0.92815 1.75162 1.14949 1.01407 1.21340 1.78484 1.17994 1.20912 0.87771 1.21045 0.94486 0.92697 0.98069 1.21770 0.90741 0.92797 0.94800 0.92703 0.93087 0.95737 0.90797 0.91147 0.90538 0.90913 0.76376 0.84310 0.83504 0.84185 0.78819 0.78696 0.82489 0.95985 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.60 13.97 55.49 0.78 -26.82 16 2 C 0.02 0.56 5.43 -17.43 -0.09 0.46 16 3 Si 0.89 21.60 24.39 -169.99 -4.15 17.45 16 4 H -0.29 -6.56 6.84 56.52 0.39 -6.18 16 5 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 7 C -0.24 -6.74 10.56 -15.06 -0.16 -6.90 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 9 N -0.61 -14.18 3.22 -169.84 -0.55 -14.73 16 10 C 0.13 2.44 7.23 -2.54 -0.02 2.42 16 11 C -0.12 -1.74 6.54 -24.58 -0.16 -1.90 16 12 C -0.12 -1.73 2.98 -88.79 -0.26 -1.99 16 13 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.13 1.78 5.00 -4.04 -0.02 1.76 16 15 N -0.72 -9.18 5.38 -61.25 -0.33 -9.51 16 16 C 0.56 7.70 7.77 -12.32 -0.10 7.61 16 17 O -0.53 -9.10 16.34 5.32 0.09 -9.01 16 18 C -0.11 -1.22 5.87 -104.99 -0.62 -1.84 16 19 C -0.08 -0.64 9.54 -39.16 -0.37 -1.02 16 20 C -0.10 -0.64 10.02 -39.67 -0.40 -1.04 16 21 C -0.09 -0.62 9.45 -39.33 -0.37 -0.99 16 22 C 0.11 1.07 6.66 -83.62 -0.56 0.51 16 23 N -0.24 -2.51 3.56 -10.50 -0.04 -2.55 16 24 C -0.05 -0.35 10.91 -16.68 -0.18 -0.54 16 25 C -0.04 -0.36 12.05 -17.73 -0.21 -0.57 16 26 N -0.26 -3.27 12.39 30.24 0.37 -2.89 16 27 N -0.07 -0.97 12.42 60.35 0.75 -0.22 16 28 C -0.04 -0.49 9.16 -39.00 -0.36 -0.85 16 29 C 0.12 2.49 4.55 -2.90 -0.01 2.48 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.40 4.42 6.43 -40.82 -0.26 4.15 16 38 H 0.14 0.97 6.40 -52.49 -0.34 0.64 16 39 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.45 6.77 -52.48 -0.36 0.10 16 41 H 0.19 0.48 7.12 -52.49 -0.37 0.10 16 42 H 0.20 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.16 2.08 7.29 -52.48 -0.38 1.69 16 44 H 0.02 0.48 3.55 -51.93 -0.18 0.29 16 45 H 0.04 0.94 7.73 -51.92 -0.40 0.54 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -36.58 370.76 -7.06 -43.63 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.68 Total: 1.45 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.90 Total: -2.38 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.99 Total: -56.72 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.15 Total: 17.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.58 -7.06 -43.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029021903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.854 kcal (2) G-P(sol) polarization free energy of solvation -36.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds