Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99783 * 2 1 4 4 H 1.48504 * 109.46598 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46859 * 299.99571 * 3 2 1 6 6 H 1.48496 * 109.47464 * 60.00116 * 3 2 1 7 7 C 1.38813 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99782 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.47668 * 134.45539 * 179.97438 * 9 7 2 11 11 C 1.53513 * 85.97720 * 204.28438 * 10 9 7 12 12 C 1.47663 * 134.45921 * 359.95650 * 9 7 2 13 13 C 1.52676 * 113.56626 * 91.01592 * 11 10 9 14 14 C 1.53337 * 109.11049 * 73.81539 * 13 11 10 15 15 N 1.46879 * 108.76421 * 52.40346 * 14 13 11 16 16 C 1.34777 * 120.46641 * 124.47241 * 15 14 13 17 17 O 1.21630 * 120.00217 * 4.64677 * 16 15 14 18 18 C 1.47214 * 120.00170 * 184.65406 * 16 15 14 19 19 C 1.37746 * 119.94050 * 125.05122 * 18 16 15 20 20 C 1.39865 * 119.92516 * 179.78965 * 19 18 16 21 21 C 1.36296 * 119.82023 * 0.48699 * 20 19 18 22 22 C 1.40773 * 119.70988 * 359.49226 * 21 20 19 23 23 N 1.32819 * 132.73989 * 180.25092 * 22 21 20 24 24 C 1.32375 * 109.74138 * 180.02562 * 23 22 21 25 25 N 1.31388 * 109.61677 * 359.97438 * 24 23 22 26 26 N 1.36550 * 119.87869 * 0.27901 * 22 21 20 27 27 C 1.46884 * 119.06741 * 304.74097 * 15 14 13 28 28 C 1.52667 * 113.56644 * 222.22944 * 11 10 9 29 29 H 0.97008 * 119.99717 * 0.02562 * 1 2 3 30 30 H 1.09007 * 113.79074 * 90.02532 * 10 9 7 31 31 H 1.08993 * 113.79152 * 318.55292 * 10 9 7 32 32 H 1.09007 * 113.78808 * 41.44245 * 12 9 7 33 33 H 1.09004 * 113.79580 * 269.98141 * 12 9 7 34 34 H 1.08997 * 109.53511 * 313.92018 * 13 11 10 35 35 H 1.09001 * 109.58744 * 193.73968 * 13 11 10 36 36 H 1.08994 * 109.59056 * 292.61540 * 14 13 11 37 37 H 1.09008 * 109.58579 * 172.18358 * 14 13 11 38 38 H 1.07999 * 120.04088 * 0.02562 * 19 18 16 39 39 H 1.08001 * 120.09016 * 180.27400 * 20 19 18 40 40 H 1.08001 * 120.14668 * 179.76789 * 21 20 19 41 41 H 1.08003 * 125.19049 * 179.97438 * 24 23 22 42 42 H 1.09007 * 109.58586 * 175.03872 * 27 15 14 43 43 H 1.08996 * 109.58621 * 295.47766 * 27 15 14 44 44 H 1.09003 * 109.52911 * 46.08055 * 28 11 10 45 45 H 1.08996 * 109.53153 * 166.22881 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 1.7213 -3.8107 0.0005 11 6 0.3476 -4.0810 -0.6293 12 6 -0.1043 -2.7567 0.0009 13 6 0.3609 -4.0585 -2.1558 14 6 1.0375 -5.3346 -2.6708 15 7 0.3917 -6.4967 -2.0464 16 6 -0.1307 -7.4789 -2.8072 17 8 0.0046 -7.4494 -4.0156 18 6 -0.8652 -8.5874 -2.1757 19 6 -2.1499 -8.8785 -2.5783 20 6 -2.8459 -9.9346 -1.9812 21 6 -2.2529 -10.6657 -0.9955 22 6 -0.9393 -10.3585 -0.5932 23 7 -0.1274 -10.8884 0.3147 24 6 1.0249 -10.2369 0.3185 25 7 0.9920 -9.2770 -0.5780 26 7 -0.2693 -9.3278 -1.1876 27 6 0.3180 -6.5704 -0.5812 28 6 -0.3581 -5.3056 -0.0523 29 1 -0.4850 0.8401 -0.0004 30 1 1.8387 -4.2344 0.9980 31 1 2.5593 -4.0340 -0.6596 32 1 -0.7169 -2.1423 -0.6591 33 1 -0.5298 -2.8669 0.9983 34 1 0.9154 -3.1866 -2.5027 35 1 -0.6620 -4.0121 -2.5295 36 1 2.0951 -5.3191 -2.4078 37 1 0.9288 -5.3942 -3.7538 38 1 -2.6179 -8.2944 -3.3569 39 1 -3.8517 -10.1680 -2.2979 40 1 -2.7868 -11.4799 -0.5282 41 1 1.8641 -10.4604 0.9607 42 1 -0.2644 -7.4440 -0.2882 43 1 1.3240 -6.6437 -0.1680 44 1 -0.2939 -5.2843 1.0356 45 1 -1.4049 -5.2997 -0.3558 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035744009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 163.222092 kcal Electronic energy + Delta-G solvation = -30206.279097 eV Core-core repulsion = 26228.737345 eV Total energy + Delta-G solvation = -3977.541752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.10247 -40.48836 -39.01960 -37.79589 -35.92887 -34.08615 -32.50493 -31.39111 -31.09278 -30.68158 -30.08444 -27.01070 -25.46718 -24.97154 -23.87796 -23.59841 -23.50116 -22.42390 -21.27839 -19.78777 -18.56239 -18.12360 -17.35197 -16.91333 -16.72973 -16.67145 -15.99397 -15.94939 -15.08209 -14.89389 -14.71212 -14.52115 -14.06866 -13.81344 -13.71793 -13.38782 -13.08325 -13.01609 -12.67469 -12.52215 -12.39346 -12.18562 -12.11264 -11.74514 -11.46784 -11.12857 -11.08523 -10.90925 -10.86805 -10.52113 -10.37545 -10.27643 -10.12155 -9.94676 -9.74325 -9.59015 -9.38245 -8.80424 -8.68586 -8.56433 -6.87046 -5.77209 -3.08885 -0.03610 0.55002 1.48873 2.18759 2.52073 2.71862 2.99195 3.37850 3.43605 3.45810 3.57099 3.75361 4.10248 4.36147 4.44824 4.49530 4.69732 4.85064 4.92908 4.99119 5.13320 5.23758 5.27389 5.33271 5.45171 5.51596 5.52395 5.64760 5.74153 5.82228 5.84088 5.86504 5.87898 6.01283 6.08684 6.20107 6.24750 6.27091 6.34887 6.55219 6.59730 6.75877 6.79486 7.19517 7.22073 7.35052 7.57052 7.58976 7.79895 7.98186 9.04823 9.70898 10.60764 11.39791 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021930 B = 0.002785 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.484042 B =10052.072948 C =10391.666874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.079 0.921 9 N -0.608 5.608 10 C 0.127 3.873 11 C -0.109 4.109 12 C 0.174 3.826 13 C -0.096 4.096 14 C 0.113 3.887 15 N -0.578 5.578 16 C 0.563 3.437 17 O -0.525 6.525 18 C 0.110 3.890 19 C -0.101 4.101 20 C -0.063 4.063 21 C -0.090 4.090 22 C 0.277 3.723 23 N -0.542 5.542 24 C 0.237 3.763 25 N -0.329 5.329 26 N -0.275 5.275 27 C 0.118 3.882 28 C -0.120 4.120 29 H 0.252 0.748 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.228 0.772 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 -22.186 -2.673 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.334 5.334 10 C 0.001 3.999 11 C -0.111 4.111 12 C 0.049 3.951 13 C -0.134 4.134 14 C -0.008 4.008 15 N -0.308 5.308 16 C 0.348 3.652 17 O -0.402 6.402 18 C -0.002 4.002 19 C -0.124 4.124 20 C -0.089 4.089 21 C -0.112 4.112 22 C 0.024 3.976 23 N -0.272 5.272 24 C -0.063 4.063 25 N -0.159 5.159 26 N -0.052 5.052 27 C -0.005 4.005 28 C -0.159 4.159 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.185 0.815 39 H 0.177 0.823 40 H 0.179 0.821 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.740 -21.594 -3.122 22.561 hybrid contribution 0.379 0.911 0.381 1.058 sum -5.360 -20.684 -2.741 21.542 Atomic orbital electron populations 1.69826 1.04969 1.25117 1.56912 1.24757 0.95640 0.97421 1.02625 0.86085 0.78771 0.83905 0.77244 1.20514 1.21726 1.21828 1.19060 0.90253 0.82059 1.43459 0.90343 1.45964 1.02297 0.99168 1.86003 1.22585 0.94298 0.86613 0.96434 1.22398 0.98131 0.95459 0.95079 1.22218 0.88145 0.88211 0.96538 1.21506 1.00993 0.96651 0.94224 1.21850 0.96723 0.83593 0.98672 1.48038 1.54853 1.20529 1.07424 1.17521 0.79455 0.81684 0.86565 1.90867 1.59149 1.77136 1.13016 1.20481 0.94208 0.95188 0.90339 1.21366 0.90922 0.99050 1.01111 1.21224 1.00916 0.92937 0.93822 1.20485 0.90093 1.02108 0.98483 1.21890 0.95448 0.87953 0.92316 1.70852 1.03129 1.30723 1.22518 1.26265 0.96251 0.88841 0.94916 1.78819 0.95161 1.25930 1.16027 1.47983 1.11637 1.21877 1.23725 1.21809 1.02095 0.98246 0.78376 1.21798 0.99493 0.93957 1.00650 0.93771 0.95159 0.94073 0.90913 0.95787 0.89034 0.91955 0.90755 0.89018 0.81455 0.82310 0.82113 0.75609 0.91373 0.90210 0.90607 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.96 11.39 55.49 0.63 -26.33 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -15.15 3.53 -179.78 -0.64 -15.78 16 10 C 0.13 2.50 7.73 -3.14 -0.02 2.48 16 11 C -0.11 -1.92 0.77 -154.43 -0.12 -2.04 16 12 C 0.17 3.96 6.64 -3.17 -0.02 3.94 16 13 C -0.10 -1.59 5.21 -26.72 -0.14 -1.72 16 14 C 0.11 1.66 6.29 -3.66 -0.02 1.64 16 15 N -0.58 -8.18 2.95 -174.30 -0.51 -8.70 16 16 C 0.56 8.07 7.20 -12.61 -0.09 7.98 16 17 O -0.53 -8.79 16.48 5.25 0.09 -8.70 16 18 C 0.11 1.29 5.49 -82.05 -0.45 0.84 16 19 C -0.10 -0.82 9.73 -39.15 -0.38 -1.20 16 20 C -0.06 -0.35 10.04 -39.67 -0.40 -0.74 16 21 C -0.09 -0.64 10.09 -39.32 -0.40 -1.03 16 22 C 0.28 3.02 7.88 -156.38 -1.23 1.78 16 23 N -0.54 -6.31 11.24 -13.99 -0.16 -6.46 16 24 C 0.24 2.52 12.98 -92.00 -1.19 1.33 16 25 N -0.33 -4.18 10.45 29.25 0.31 -3.87 16 26 N -0.27 -3.35 2.72 -8.81 -0.02 -3.37 16 27 C 0.12 1.57 4.76 -3.90 -0.02 1.56 16 28 C -0.12 -1.74 5.24 -26.97 -0.14 -1.88 16 29 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.03 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.04 0.79 7.41 -51.93 -0.38 0.40 16 32 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 33 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.09 1.74 8.01 -51.93 -0.42 1.32 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.09 7.49 -51.93 -0.39 0.70 16 37 H 0.09 1.36 7.00 -51.92 -0.36 0.99 16 38 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.16 0.26 8.06 -52.49 -0.42 -0.17 16 40 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.23 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.07 0.89 4.64 -51.93 -0.24 0.65 16 43 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 44 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -34.73 364.57 -10.65 -45.38 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -5.93 Total: -1.02 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -4.89 Total: 6.33 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -0.39 Total: -64.51 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.73 -10.65 -45.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035744009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.602 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds