Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86790 * 120.00013 * 2 1 4 4 H 1.48500 * 109.47362 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47334 * 240.00190 * 3 2 1 6 6 H 1.48501 * 109.47419 * 119.99871 * 3 2 1 7 7 C 1.38813 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00627 * 3.58615 * 7 2 1 9 9 N 1.36948 * 119.99418 * 183.58326 * 7 2 1 10 10 C 1.48157 * 126.40240 * 14.00762 * 9 7 2 11 11 C 1.55292 * 107.03926 * 175.03844 * 10 9 7 12 12 C 1.53750 * 101.84237 * 337.52310 * 11 10 9 13 13 H 1.08999 * 111.30235 * 281.04547 * 12 11 10 14 14 C 1.52233 * 114.74360 * 152.75953 * 12 11 10 15 15 N 1.47796 * 106.11869 * 189.87723 * 14 12 11 16 16 C 1.34783 * 119.83651 * 232.11604 * 15 14 12 17 17 O 1.21571 * 119.99780 * 358.00698 * 16 15 14 18 18 C 1.47684 * 120.00143 * 178.00397 * 16 15 14 19 19 C 1.39979 * 120.38502 * 222.92898 * 18 16 15 20 20 N 1.31384 * 121.15991 * 179.71839 * 19 18 16 21 21 C 1.32548 * 121.79288 * 0.60353 * 20 19 18 22 22 N 1.37576 * 133.56658 * 179.70758 * 21 20 19 23 23 H 0.97003 * 126.23606 * 359.97438 * 22 21 20 24 24 C 1.36169 * 107.52622 * 179.97438 * 22 21 20 25 25 N 1.30061 * 110.11057 * 359.97438 * 24 22 21 26 26 C 1.35771 * 109.43777 * 0.02562 * 25 24 22 27 27 C 1.39488 * 133.75273 * 179.97438 * 26 25 24 28 28 C 1.46598 * 120.48302 * 52.47057 * 15 14 12 29 29 C 1.53954 * 110.57225 * 311.84365 * 28 15 14 30 30 C 1.45463 * 126.40166 * 193.69767 * 9 7 2 31 31 H 1.08996 * 109.26654 * 93.84237 * 30 9 7 32 32 H 0.97003 * 119.99683 * 174.81979 * 1 2 3 33 33 H 1.08996 * 109.92292 * 294.39011 * 10 9 7 34 34 H 1.09000 * 109.91670 * 55.49691 * 10 9 7 35 35 H 1.08993 * 110.95276 * 95.65795 * 11 10 9 36 36 H 1.09003 * 110.95462 * 219.38607 * 11 10 9 37 37 H 1.08995 * 110.06995 * 309.63139 * 14 12 11 38 38 H 1.09003 * 110.07195 * 71.21395 * 14 12 11 39 39 H 1.08004 * 119.41786 * 359.97438 * 19 18 16 40 40 H 1.07998 * 124.94646 * 180.02562 * 24 22 21 41 41 H 1.08000 * 120.96769 * 0.02936 * 27 26 25 42 42 H 1.09000 * 109.26017 * 191.56461 * 28 15 14 43 43 H 1.08993 * 109.25567 * 72.12296 * 28 15 14 44 44 H 1.08996 * 109.88624 * 291.58933 * 29 28 15 45 45 H 1.09005 * 109.87975 * 170.51111 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 1.4718 -2.1366 -0.0575 9 7 3.3776 -1.2033 0.0747 10 6 4.2390 -0.0565 0.4460 11 6 5.6978 -0.5849 0.5096 12 6 5.4787 -2.0903 0.7320 13 1 5.2391 -2.3060 1.7733 14 6 6.5987 -2.9809 0.2122 15 7 6.0944 -4.3674 0.2996 16 6 6.8271 -5.3092 0.9264 17 8 7.9161 -5.0256 1.3865 18 6 6.3070 -6.6854 1.0544 19 6 6.4383 -7.3826 2.2612 20 7 5.9764 -8.6054 2.3936 21 6 5.3783 -9.2380 1.3941 22 7 4.8214 -10.4891 1.2617 23 1 4.7756 -11.1720 1.9491 24 6 4.3462 -10.5939 -0.0100 25 7 4.5735 -9.4932 -0.6645 26 6 5.2107 -8.6093 0.1454 27 6 5.6837 -7.3087 -0.0290 28 6 4.8053 -4.7289 -0.2977 29 6 3.7182 -3.7172 0.1084 30 6 4.2556 -2.3324 -0.1903 31 1 4.5813 -2.2985 -1.2299 32 1 -0.4850 -0.8367 -0.0759 33 1 4.1601 0.7267 -0.3080 34 1 3.9393 0.3333 1.4188 35 1 6.2200 -0.4016 -0.4294 36 1 6.2369 -0.1415 1.3468 37 1 6.8339 -2.7219 -0.8200 38 1 7.4846 -2.8715 0.8378 39 1 6.9243 -6.9054 3.0993 40 1 3.8517 -11.4641 -0.4159 41 1 5.5706 -6.7984 -0.9741 42 1 4.5169 -5.7230 0.0441 43 1 4.9017 -4.7366 -1.3833 44 1 3.5044 -3.8102 1.1731 45 1 2.8114 -3.8956 -0.4696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036726735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 109.120349 kcal Electronic energy + Delta-G solvation = -29822.032424 eV Core-core repulsion = 25842.144644 eV Total energy + Delta-G solvation = -3979.887780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.77122 -40.63652 -38.95881 -37.93968 -35.77166 -34.18176 -32.93665 -31.88248 -31.70472 -30.37043 -29.99807 -28.33106 -25.65630 -24.54849 -24.04352 -23.09145 -22.67465 -22.08357 -20.63797 -20.15476 -19.33794 -19.16391 -17.86973 -17.37233 -16.87356 -16.32619 -16.08421 -15.93244 -15.41926 -15.15073 -14.84263 -14.55070 -14.30484 -14.12254 -13.79509 -13.45539 -13.29959 -12.99360 -12.94379 -12.79539 -12.74476 -12.21562 -12.00339 -11.56871 -11.47910 -11.39833 -11.10036 -10.89031 -10.79263 -10.65008 -10.21202 -9.86761 -9.79277 -9.57900 -9.17025 -9.16246 -9.02939 -8.97593 -8.81500 -8.66646 -7.02569 -6.26604 -3.24503 0.33608 0.56497 2.10258 2.33476 2.55736 2.84196 3.40153 3.41136 3.46089 3.64025 3.68907 3.98646 4.26936 4.35406 4.45910 4.60435 4.69542 4.72289 4.89088 4.93031 5.06562 5.15075 5.27453 5.34051 5.36401 5.48530 5.54451 5.55147 5.63433 5.65747 5.78509 5.86047 5.96454 6.01989 6.05897 6.10392 6.19665 6.26458 6.44195 6.45655 6.61945 6.64471 6.76771 6.89784 7.22043 7.26255 7.43743 7.68623 8.00509 8.32200 9.03627 9.58430 10.25374 11.21828 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002975 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.497726 B = 9410.199774 C =10554.351943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.026 4.026 3 Si 1.080 2.920 4 H -0.304 1.304 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.316 4.316 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.091 3.909 11 C -0.117 4.117 12 C -0.127 4.127 13 H 0.084 0.916 14 C 0.129 3.871 15 N -0.597 5.597 16 C 0.568 3.432 17 O -0.536 6.536 18 C -0.188 4.188 19 C 0.194 3.806 20 N -0.485 5.485 21 C 0.255 3.745 22 N -0.589 5.589 23 H 0.430 0.570 24 C 0.277 3.723 25 N -0.480 5.480 26 C -0.007 4.007 27 C 0.017 3.983 28 C 0.098 3.902 29 C -0.127 4.127 30 C 0.169 3.831 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.177 0.823 40 H 0.228 0.772 41 H 0.154 0.846 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.875 -19.990 1.088 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.225 4.225 3 Si 0.915 3.085 4 H -0.232 1.232 5 H -0.226 1.226 6 H -0.211 1.211 7 C -0.444 4.444 8 H 0.096 0.904 9 N -0.331 5.331 10 C -0.033 4.033 11 C -0.156 4.156 12 C -0.147 4.147 13 H 0.103 0.897 14 C 0.007 3.993 15 N -0.329 5.329 16 C 0.355 3.645 17 O -0.414 6.414 18 C -0.196 4.196 19 C 0.025 3.975 20 N -0.197 5.197 21 C 0.018 3.982 22 N -0.204 5.204 23 H 0.270 0.730 24 C -0.011 4.011 25 N -0.199 5.199 26 C -0.126 4.126 27 C -0.011 4.011 28 C -0.025 4.025 29 C -0.166 4.166 30 C 0.061 3.939 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.194 0.806 40 H 0.244 0.756 41 H 0.171 0.829 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.952 -18.450 1.253 22.578 hybrid contribution -0.002 -1.970 0.190 1.979 sum 12.950 -20.420 1.443 24.223 Atomic orbital electron populations 1.70914 1.05556 1.29338 1.51836 1.25850 0.96610 1.01154 0.98877 0.83766 0.72855 0.75677 0.76224 1.23201 1.22609 1.21067 1.20143 0.79022 0.95297 1.49903 0.90394 1.44494 1.02153 1.05886 1.80559 1.22641 0.89589 0.92117 0.98978 1.22384 0.97149 0.94568 1.01457 1.22657 0.96477 0.94691 1.00920 0.89738 1.21646 0.97371 0.78494 1.01778 1.48229 1.20064 1.09714 1.54918 1.17900 0.84509 0.83956 0.78097 1.90789 1.20438 1.81313 1.48896 1.20676 1.05592 0.96846 0.96534 1.22656 0.91869 0.87051 0.95888 1.66494 1.12681 1.10114 1.30423 1.19173 0.98386 0.87859 0.92789 1.42886 1.49656 1.13100 1.14744 0.72958 1.25557 0.96856 0.98908 0.79792 1.70519 1.17564 1.00665 1.31132 1.19514 1.04959 0.96139 0.92021 1.21073 0.90318 0.90565 0.99105 1.22263 0.82796 0.99582 0.97894 1.21856 0.97411 0.95042 1.02332 1.20555 0.89645 0.88335 0.95389 0.95746 0.93029 0.94202 0.92745 0.91303 0.91138 0.90711 0.88777 0.80645 0.75622 0.82894 0.89472 0.91044 0.91414 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.70 55.49 0.76 -28.51 16 2 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 3 Si 1.08 26.74 24.57 -169.99 -4.18 22.57 16 4 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 5 H -0.30 -7.04 6.46 56.52 0.37 -6.68 16 6 H -0.28 -6.40 5.30 56.52 0.30 -6.10 16 7 C -0.32 -8.80 10.27 -15.05 -0.15 -8.95 16 8 H 0.08 2.27 7.40 -52.49 -0.39 1.88 16 9 N -0.60 -14.27 3.29 -163.27 -0.54 -14.81 16 10 C 0.09 1.92 4.68 -1.92 -0.01 1.91 16 11 C -0.12 -1.87 6.54 -25.13 -0.16 -2.04 16 12 C -0.13 -2.03 2.84 -89.51 -0.25 -2.28 16 13 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 14 C 0.13 1.75 5.97 -3.72 -0.02 1.72 16 15 N -0.60 -8.01 2.99 -173.60 -0.52 -8.53 16 16 C 0.57 7.83 7.31 -12.40 -0.09 7.74 16 17 O -0.54 -8.71 16.34 5.30 0.09 -8.63 16 18 C -0.19 -2.28 5.15 -104.85 -0.54 -2.82 16 19 C 0.19 2.25 10.81 -17.09 -0.18 2.06 16 20 N -0.48 -5.69 10.36 -11.96 -0.12 -5.81 16 21 C 0.25 2.76 8.45 -155.63 -1.31 1.45 16 22 N -0.59 -3.94 6.20 -13.22 -0.08 -4.02 16 23 H 0.43 1.43 8.96 -40.82 -0.37 1.07 16 24 C 0.28 1.71 12.97 -89.70 -1.16 0.55 16 25 N -0.48 -5.04 11.29 -12.02 -0.14 -5.18 16 26 C -0.01 -0.08 7.23 -84.69 -0.61 -0.69 16 27 C 0.02 0.19 7.47 -38.58 -0.29 -0.10 16 28 C 0.10 1.25 4.85 -3.49 -0.02 1.24 16 29 C -0.13 -2.12 5.42 -26.98 -0.15 -2.26 16 30 C 0.17 3.18 2.57 -68.13 -0.18 3.00 16 31 H 0.03 0.47 7.91 -51.93 -0.41 0.06 16 32 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 33 H 0.04 0.89 4.22 -51.93 -0.22 0.67 16 34 H 0.05 1.21 5.99 -51.93 -0.31 0.90 16 35 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 0.93 8.07 -51.93 -0.42 0.52 16 38 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 39 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.23 0.18 8.06 -52.49 -0.42 -0.24 16 41 H 0.15 1.56 6.43 -52.49 -0.34 1.22 16 42 H 0.09 1.03 4.41 -51.93 -0.23 0.80 16 43 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 44 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 45 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -36.56 349.10 -10.38 -46.94 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.68 Total: 1.05 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -5.23 Total: -0.33 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -0.64 Total: -66.86 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.18 Total: 22.57 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.56 -10.38 -46.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036726735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.065 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds