Wall clock time and date at job start Sat Apr 11 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48501 * 109.47217 * 270.00413 * 3 2 1 5 5 H 1.48501 * 109.47207 * 30.00077 * 3 2 1 6 6 H 1.48500 * 109.47254 * 150.00081 * 3 2 1 7 7 C 1.38811 * 119.99898 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99502 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.48163 * 126.40669 * 359.97291 * 9 7 2 11 11 C 1.55287 * 107.21460 * 184.82489 * 10 9 7 12 12 C 1.54258 * 101.61055 * 22.53672 * 11 10 9 13 13 H 1.08997 * 112.01320 * 79.22459 * 12 11 10 14 14 C 1.52195 * 114.70663 * 207.20366 * 12 11 10 15 15 N 1.47719 * 106.38578 * 169.56926 * 14 12 11 16 16 C 1.34770 * 119.68643 * 127.94720 * 15 14 12 17 17 O 1.21570 * 120.00060 * 355.51100 * 16 15 14 18 18 C 1.47692 * 120.00084 * 175.51787 * 16 15 14 19 19 C 1.39989 * 120.38134 * 327.27100 * 18 16 15 20 20 N 1.31381 * 121.15794 * 179.76471 * 19 18 16 21 21 C 1.32547 * 121.79257 * 0.50876 * 20 19 18 22 22 N 1.37579 * 133.56536 * 179.73383 * 21 20 19 23 23 H 0.97002 * 126.24150 * 0.02967 * 22 21 20 24 24 C 1.36164 * 107.52525 * 180.02562 * 22 21 20 25 25 N 1.30061 * 110.11491 * 0.02562 * 24 22 21 26 26 C 1.35774 * 109.43047 * 359.97438 * 25 24 22 27 27 C 1.39485 * 133.74671 * 180.02562 * 26 25 24 28 28 C 1.46599 * 120.63085 * 307.97031 * 15 14 12 29 29 C 1.53962 * 110.57850 * 47.79822 * 28 15 14 30 30 C 1.45466 * 126.40912 * 179.97438 * 9 7 2 31 31 H 1.09000 * 109.27089 * 265.55493 * 30 9 7 32 32 H 0.96998 * 119.99792 * 359.97438 * 1 2 3 33 33 H 1.09006 * 109.92046 * 304.27360 * 10 9 7 34 34 H 1.08999 * 109.92219 * 65.37186 * 10 9 7 35 35 H 1.09001 * 110.95690 * 140.72099 * 11 10 9 36 36 H 1.09000 * 110.95494 * 264.44296 * 11 10 9 37 37 H 1.09005 * 110.05868 * 50.35218 * 14 12 11 38 38 H 1.09002 * 110.06786 * 288.78979 * 14 12 11 39 39 H 1.08000 * 119.41899 * 0.02562 * 19 18 16 40 40 H 1.08003 * 124.94898 * 180.02562 * 24 22 21 41 41 H 1.08006 * 120.97478 * 0.02562 * 27 26 25 42 42 H 1.08996 * 109.25485 * 287.51228 * 28 15 14 43 43 H 1.09003 * 109.22430 * 168.05627 * 28 15 14 44 44 H 1.09000 * 109.87950 * 189.48800 * 29 28 15 45 45 H 1.08998 * 109.94379 * 68.43867 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1468 -2.5533 -0.0017 11 6 -0.4385 -4.0735 0.1217 12 6 0.8684 -4.5899 0.7579 13 1 0.9014 -4.4040 1.8314 14 6 1.2009 -6.0407 0.4401 15 7 2.5825 -6.2647 0.9123 16 6 2.8489 -7.3044 1.7274 17 8 1.9426 -8.0040 2.1363 18 6 4.2418 -7.5938 2.1241 19 6 5.2977 -7.3324 1.2429 20 7 6.5428 -7.5796 1.5817 21 6 6.8563 -8.0942 2.7623 22 7 8.0455 -8.4474 3.3571 23 1 8.9291 -8.3661 2.9652 24 6 7.7562 -8.9318 4.5964 25 7 6.4721 -8.8999 4.8005 26 6 5.8529 -8.3916 3.7042 27 6 4.5203 -8.1370 3.3803 28 6 3.6665 -5.3666 0.5033 29 6 3.2477 -3.8960 0.6827 30 6 1.9078 -3.7211 -0.0028 31 1 1.9787 -4.0818 -1.0289 32 1 -0.4850 0.8400 0.0004 33 1 -0.5802 -2.0220 0.8457 34 1 -0.5635 -2.1696 -0.9329 35 1 -1.2917 -4.2550 0.7754 36 1 -0.5991 -4.5206 -0.8594 37 1 1.1408 -6.2111 -0.6349 38 1 0.5140 -6.7052 0.9642 39 1 5.0854 -6.9164 0.2692 40 1 8.4866 -9.2904 5.3065 41 1 3.7270 -8.3532 4.0806 42 1 3.9064 -5.5468 -0.5446 43 1 4.5476 -5.5664 1.1132 44 1 3.9878 -3.2411 0.2227 45 1 3.1547 -3.6627 1.7433 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036726736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:56 Heat of formation + Delta-G solvation = 103.562306 kcal Electronic energy + Delta-G solvation = -29626.710299 eV Core-core repulsion = 25646.581504 eV Total energy + Delta-G solvation = -3980.128795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.74177 -40.58455 -38.71825 -37.86992 -35.49959 -34.03912 -32.82144 -31.68227 -31.59817 -30.56887 -29.37154 -28.04610 -25.37603 -24.71217 -24.20226 -22.97019 -22.38462 -22.05226 -20.25012 -19.97430 -19.25326 -19.04085 -18.26209 -16.78200 -16.60036 -16.20382 -16.04049 -15.68454 -15.10425 -15.06141 -14.55456 -14.45407 -14.13101 -13.93343 -13.56599 -13.35833 -13.20850 -13.07603 -12.94259 -12.50266 -12.31986 -11.65406 -11.57670 -11.53387 -11.44026 -11.32605 -10.86202 -10.79149 -10.75088 -10.25213 -10.12228 -10.00917 -9.87286 -9.64646 -9.51377 -9.48642 -9.22699 -8.88860 -8.63339 -8.57362 -6.84892 -5.72749 -3.05964 0.40520 0.54600 2.11952 2.34691 2.66847 2.91170 3.38564 3.43482 3.45621 3.50806 3.69263 4.00641 4.28209 4.39408 4.48060 4.50311 4.70130 4.88569 4.97020 5.10345 5.20417 5.31716 5.37230 5.47543 5.53526 5.57401 5.66073 5.72153 5.78496 5.86219 6.00435 6.06756 6.11920 6.16107 6.21194 6.33351 6.46301 6.60246 6.63188 6.63768 6.79744 7.05147 7.24417 7.37226 7.42359 7.54472 7.60851 7.80496 8.10322 8.23421 9.18171 9.81822 10.49773 11.39742 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015630 B = 0.002819 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.978260 B = 9929.752156 C =11155.735503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.080 0.920 14 C 0.127 3.873 15 N -0.599 5.599 16 C 0.567 3.433 17 O -0.537 6.537 18 C -0.193 4.193 19 C 0.168 3.832 20 N -0.485 5.485 21 C 0.254 3.746 22 N -0.588 5.588 23 H 0.430 0.570 24 C 0.275 3.725 25 N -0.480 5.480 26 C -0.008 4.008 27 C 0.044 3.956 28 C 0.096 3.904 29 C -0.129 4.129 30 C 0.167 3.833 31 H 0.021 0.979 32 H 0.252 0.748 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.182 0.818 40 H 0.227 0.773 41 H 0.153 0.847 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.445 -17.965 4.387 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.173 4.173 12 C -0.146 4.146 13 H 0.099 0.901 14 C 0.005 3.995 15 N -0.331 5.331 16 C 0.354 3.646 17 O -0.415 6.415 18 C -0.201 4.201 19 C 0.000 4.000 20 N -0.198 5.198 21 C 0.018 3.982 22 N -0.203 5.203 23 H 0.270 0.730 24 C -0.014 4.014 25 N -0.199 5.199 26 C -0.128 4.128 27 C 0.016 3.984 28 C -0.027 4.027 29 C -0.168 4.168 30 C 0.059 3.941 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.199 0.801 40 H 0.243 0.757 41 H 0.171 0.829 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.140 -18.169 4.807 23.520 hybrid contribution 0.862 1.183 -0.296 1.493 sum 15.002 -16.986 4.511 23.107 Atomic orbital electron populations 1.69940 1.04888 1.25043 1.56973 1.24791 0.95673 0.97631 1.02330 0.86160 0.78594 0.83707 0.77541 1.21639 1.21732 1.20735 1.18983 0.90337 0.82311 1.43767 0.90383 1.44193 1.01653 0.99432 1.86572 1.21530 0.83893 0.88373 1.01018 1.22785 0.95675 0.99585 0.99300 1.22747 0.97894 0.93187 1.00762 0.90147 1.21683 0.81064 0.97414 0.99290 1.48187 1.10237 1.26831 1.47809 1.17878 0.87351 0.80841 0.78541 1.90781 1.46416 1.49566 1.54772 1.20671 0.95372 1.07287 0.96775 1.23244 0.84972 0.92293 0.99522 1.66483 1.22053 1.15396 1.15836 1.19166 0.87007 0.99635 0.92409 1.42878 1.08215 1.53870 1.15336 0.72958 1.25539 0.94319 0.96251 0.85268 1.70504 1.04411 1.20178 1.24799 1.19528 0.94397 1.06018 0.92826 1.20795 0.93742 0.89303 0.94543 1.22374 0.89358 0.90896 1.00121 1.21898 0.99547 0.93194 1.02204 1.20645 0.91042 0.87293 0.95166 0.96201 0.93751 0.92757 0.94340 0.91975 0.92244 0.90954 0.88948 0.80143 0.75668 0.82917 0.90913 0.89462 0.90335 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.43 55.49 0.58 -26.12 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.03 9.88 -15.06 -0.15 -6.18 16 8 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 9 N -0.59 -14.46 3.35 -163.09 -0.55 -15.01 16 10 C 0.18 4.16 5.44 -1.91 -0.01 4.15 16 11 C -0.13 -2.43 6.57 -24.86 -0.16 -2.59 16 12 C -0.13 -2.16 2.87 -89.12 -0.26 -2.42 16 13 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 14 C 0.13 1.84 5.97 -3.78 -0.02 1.82 16 15 N -0.60 -8.24 3.00 -173.68 -0.52 -8.76 16 16 C 0.57 8.20 7.41 -12.40 -0.09 8.10 16 17 O -0.54 -9.33 16.17 5.30 0.09 -9.25 16 18 C -0.19 -2.42 5.33 -104.85 -0.56 -2.97 16 19 C 0.17 1.85 8.51 -17.09 -0.15 1.70 16 20 N -0.49 -5.56 10.36 -11.96 -0.12 -5.68 16 21 C 0.25 2.77 8.45 -155.63 -1.31 1.46 16 22 N -0.59 -3.94 6.20 -13.22 -0.08 -4.02 16 23 H 0.43 1.42 8.96 -40.82 -0.37 1.05 16 24 C 0.27 1.71 12.97 -89.71 -1.16 0.54 16 25 N -0.48 -5.19 11.29 -12.02 -0.14 -5.32 16 26 C -0.01 -0.10 7.23 -84.69 -0.61 -0.71 16 27 C 0.04 0.55 9.77 -38.58 -0.38 0.18 16 28 C 0.10 1.18 4.61 -3.49 -0.02 1.16 16 29 C -0.13 -2.09 5.48 -26.98 -0.15 -2.24 16 30 C 0.17 3.19 2.58 -67.98 -0.18 3.01 16 31 H 0.02 0.40 7.90 -51.93 -0.41 -0.02 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 34 H 0.04 1.00 7.76 -51.93 -0.40 0.59 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 37 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 38 H 0.09 1.38 6.98 -51.93 -0.36 1.02 16 39 H 0.18 1.62 5.51 -52.49 -0.29 1.33 16 40 H 0.23 0.16 8.06 -52.48 -0.42 -0.26 16 41 H 0.15 1.89 8.01 -52.48 -0.42 1.46 16 42 H 0.07 0.76 7.76 -51.93 -0.40 0.36 16 43 H 0.09 0.96 4.43 -51.93 -0.23 0.73 16 44 H 0.08 1.28 7.62 -51.93 -0.40 0.88 16 45 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -35.05 356.51 -11.39 -46.44 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.70 Total: 0.91 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -5.30 Total: 4.70 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.83 Total: -64.91 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.05 -11.39 -46.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036726736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.005 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds