Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00222 * 2 1 4 4 H 1.48501 * 109.46927 * 239.99876 * 3 2 1 5 5 H 1.48494 * 109.47033 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46903 * 119.99784 * 3 2 1 7 7 C 1.38810 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00253 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.46871 * 125.33439 * 0.02562 * 9 7 2 11 11 C 1.54469 * 106.65279 * 195.41232 * 10 9 7 12 12 C 1.53381 * 102.54117 * 332.25483 * 11 10 9 13 13 H 1.09006 * 105.68969 * 278.46616 * 12 11 10 14 14 C 1.49266 * 114.29921 * 161.97355 * 12 11 10 15 15 N 1.45649 * 114.67901 * 259.01679 * 14 12 11 16 16 C 1.34770 * 120.30989 * 143.49933 * 15 14 12 17 17 O 1.21573 * 120.00186 * 176.25686 * 16 15 14 18 18 C 1.47691 * 119.99575 * 356.26141 * 16 15 14 19 19 C 1.39979 * 120.38859 * 43.98374 * 18 16 15 20 20 N 1.31388 * 121.16419 * 179.97438 * 19 18 16 21 21 C 1.32542 * 121.78900 * 359.97438 * 20 19 18 22 22 N 1.37578 * 133.56535 * 179.97438 * 21 20 19 23 23 H 0.97008 * 126.23631 * 359.97438 * 22 21 20 24 24 C 1.36162 * 107.52633 * 180.02562 * 22 21 20 25 25 N 1.30059 * 110.11477 * 359.97438 * 24 22 21 26 26 C 1.35780 * 109.43192 * 359.97438 * 25 24 22 27 27 C 1.39485 * 133.74552 * 180.28138 * 26 25 24 28 28 C 1.46831 * 119.38835 * 323.51951 * 15 14 12 29 29 C 1.52960 * 107.38975 * 55.01818 * 28 15 14 30 30 C 1.48010 * 125.33990 * 179.71486 * 9 7 2 31 31 H 1.09004 * 110.21419 * 303.19870 * 30 9 7 32 32 H 0.97003 * 119.99688 * 359.97438 * 1 2 3 33 33 H 1.09004 * 110.01952 * 314.70242 * 10 9 7 34 34 H 1.08993 * 110.02363 * 76.10529 * 10 9 7 35 35 H 1.08993 * 110.80018 * 90.52064 * 11 10 9 36 36 H 1.09005 * 110.79352 * 213.99616 * 11 10 9 37 37 H 1.09010 * 108.44061 * 20.35825 * 14 12 11 38 38 H 1.09000 * 108.44881 * 137.66137 * 14 12 11 39 39 H 1.08001 * 119.41634 * 359.97438 * 19 18 16 40 40 H 1.08004 * 124.94537 * 179.97438 * 24 22 21 41 41 H 1.08000 * 120.97115 * 359.94669 * 27 26 25 42 42 H 1.08999 * 109.87044 * 174.49017 * 28 15 14 43 43 H 1.08999 * 109.87267 * 295.47600 * 28 15 14 44 44 H 1.09001 * 109.38763 * 58.68641 * 29 28 15 45 45 H 1.09000 * 109.38222 * 178.46727 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1368 -2.5246 -0.0005 11 6 -0.4452 -3.9861 0.3932 12 6 0.8040 -4.7323 -0.0917 13 1 0.6537 -4.8964 -1.1589 14 6 0.9877 -6.0828 0.5171 15 7 1.9645 -6.1355 1.5962 16 6 1.7599 -6.9369 2.6602 17 8 2.6098 -7.0284 3.5247 18 6 0.5032 -7.7041 2.7759 19 6 -0.0218 -8.3748 1.6651 20 7 -1.1383 -9.0621 1.7510 21 6 -1.8165 -9.1533 2.8861 22 7 -2.9824 -9.7891 3.2456 23 1 -3.5466 -10.3235 2.6650 24 6 -3.2006 -9.5307 4.5646 25 7 -2.2484 -8.7811 5.0369 26 6 -1.3556 -8.5098 4.0505 27 6 -0.1704 -7.7763 3.9974 28 6 3.1741 -5.3072 1.5143 29 6 2.7239 -3.8595 1.3112 30 6 1.9431 -3.7332 -0.0049 31 1 2.6059 -3.8398 -0.8637 32 1 -0.4850 0.8401 0.0004 33 1 -0.5759 -1.8416 0.7268 34 1 -0.5305 -2.3149 -0.9950 35 1 -0.5575 -4.0805 1.4732 36 1 -1.3356 -4.3461 -0.1225 37 1 0.0265 -6.4197 0.9054 38 1 1.3005 -6.7742 -0.2654 39 1 0.5001 -8.3265 0.7208 40 1 -4.0418 -9.8951 5.1355 41 1 0.2118 -7.2734 4.8735 42 1 3.7443 -5.3917 2.4394 43 1 3.7863 -5.6277 0.6713 44 1 2.0865 -3.5588 2.1427 45 1 3.5989 -3.2106 1.2731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036726737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = 97.023584 kcal Electronic energy + Delta-G solvation = -29952.611421 eV Core-core repulsion = 25972.199086 eV Total energy + Delta-G solvation = -3980.412335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68963 -40.54633 -38.66493 -37.90618 -35.38529 -34.00414 -32.72382 -32.33276 -31.39951 -30.15979 -29.44605 -28.18376 -25.57110 -24.61025 -24.18225 -23.30805 -22.44445 -21.99959 -20.32231 -20.15505 -19.01353 -18.38879 -18.08773 -16.97037 -16.63498 -16.40513 -16.02995 -15.66952 -15.29581 -14.90259 -14.65038 -14.40530 -14.17623 -13.80958 -13.56477 -13.26069 -13.15453 -13.05924 -12.80612 -12.41389 -12.26254 -11.89230 -11.51620 -11.48036 -11.39828 -11.35073 -10.94617 -10.84331 -10.70919 -10.21855 -10.15850 -10.06708 -9.83163 -9.60609 -9.49552 -9.47630 -9.16844 -8.86483 -8.63500 -8.47770 -6.84628 -5.68232 -3.05726 0.45485 0.62858 2.16299 2.39815 2.63804 2.99260 3.40557 3.45059 3.46002 3.52163 3.74424 4.05449 4.31797 4.43338 4.48362 4.54756 4.75106 4.81895 4.99749 5.16430 5.19532 5.35901 5.41767 5.48058 5.53669 5.65776 5.72010 5.76289 5.78760 5.89368 5.94375 6.00872 6.11826 6.22658 6.30569 6.38199 6.52636 6.62419 6.68143 6.69284 6.90289 7.09153 7.29440 7.42504 7.46876 7.53004 7.63864 7.84542 8.13253 8.30764 9.22232 9.82389 10.46566 11.39181 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002900 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.886305 B = 9652.177865 C =10266.210710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.167 3.833 11 C -0.136 4.136 12 C -0.109 4.109 13 H 0.067 0.933 14 C 0.123 3.877 15 N -0.592 5.592 16 C 0.569 3.431 17 O -0.536 6.536 18 C -0.188 4.188 19 C 0.171 3.829 20 N -0.483 5.483 21 C 0.253 3.747 22 N -0.589 5.589 23 H 0.430 0.570 24 C 0.275 3.725 25 N -0.480 5.480 26 C -0.005 4.005 27 C 0.040 3.960 28 C 0.111 3.889 29 C -0.139 4.139 30 C 0.173 3.827 31 H 0.042 0.958 32 H 0.252 0.748 33 H 0.083 0.917 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.175 0.825 40 H 0.227 0.773 41 H 0.152 0.848 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -21.307 3.653 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.042 3.958 11 C -0.174 4.174 12 C -0.129 4.129 13 H 0.086 0.914 14 C -0.001 4.001 15 N -0.324 5.324 16 C 0.356 3.644 17 O -0.414 6.414 18 C -0.196 4.196 19 C 0.003 3.997 20 N -0.196 5.196 21 C 0.016 3.984 22 N -0.203 5.203 23 H 0.270 0.730 24 C -0.013 4.013 25 N -0.199 5.199 26 C -0.124 4.124 27 C 0.013 3.987 28 C -0.011 4.011 29 C -0.179 4.179 30 C 0.066 3.934 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.192 0.808 40 H 0.243 0.757 41 H 0.169 0.831 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.685 -21.197 4.243 22.353 hybrid contribution 0.132 0.787 -0.561 0.976 sum -5.554 -20.410 3.682 21.470 Atomic orbital electron populations 1.69915 1.04867 1.24952 1.57294 1.24782 0.95700 0.97646 1.02377 0.86199 0.78438 0.83251 0.77883 1.21245 1.21668 1.21159 1.18967 0.90438 0.82315 1.43405 0.90519 1.44697 1.01472 0.99397 1.86846 1.21378 0.84532 0.90035 0.99820 1.22682 0.95296 0.99344 1.00107 1.20724 0.98027 0.93548 1.00573 0.91441 1.20859 0.92384 0.97725 0.89106 1.47673 1.22349 1.42097 1.20235 1.17829 0.85676 0.79330 0.81540 1.90789 1.45026 1.65384 1.40161 1.20629 0.98849 1.04890 0.95271 1.22949 0.89350 0.89644 0.97786 1.66436 1.08223 1.20354 1.24571 1.19124 0.89966 0.96996 0.92270 1.42867 1.20677 1.44626 1.12154 0.72993 1.25536 0.99369 0.95618 0.80802 1.70509 1.03211 1.16322 1.29853 1.19508 0.98018 1.03701 0.91216 1.20749 0.89236 0.91668 0.97070 1.21758 0.85700 0.90889 1.02714 1.22507 1.01373 0.93311 1.00700 1.20558 0.92310 0.86032 0.94538 0.93983 0.93769 0.89904 0.96411 0.92639 0.92181 0.90200 0.91901 0.80797 0.75680 0.83070 0.89207 0.91337 0.91350 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.22 55.49 0.57 -26.09 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -5.99 9.83 -15.06 -0.15 -6.14 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.56 3.04 -163.70 -0.50 -15.06 16 10 C 0.17 3.95 5.54 -3.07 -0.02 3.93 16 11 C -0.14 -2.45 6.37 -25.76 -0.16 -2.61 16 12 C -0.11 -1.73 2.45 -92.88 -0.23 -1.96 16 13 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 14 C 0.12 1.55 4.54 -6.34 -0.03 1.52 16 15 N -0.59 -8.33 3.00 -177.50 -0.53 -8.86 16 16 C 0.57 8.46 7.31 -12.40 -0.09 8.37 16 17 O -0.54 -9.54 16.37 5.30 0.09 -9.46 16 18 C -0.19 -2.44 5.08 -104.85 -0.53 -2.97 16 19 C 0.17 1.93 8.61 -17.09 -0.15 1.78 16 20 N -0.48 -5.64 10.37 -11.96 -0.12 -5.76 16 21 C 0.25 2.85 8.45 -155.64 -1.31 1.53 16 22 N -0.59 -4.15 6.20 -13.22 -0.08 -4.23 16 23 H 0.43 1.54 8.96 -40.82 -0.37 1.18 16 24 C 0.28 1.83 12.97 -89.71 -1.16 0.67 16 25 N -0.48 -5.44 11.29 -12.02 -0.14 -5.58 16 26 C 0.00 -0.06 7.23 -84.69 -0.61 -0.67 16 27 C 0.04 0.53 9.87 -38.58 -0.38 0.15 16 28 C 0.11 1.63 6.42 -3.88 -0.02 1.60 16 29 C -0.14 -2.46 5.19 -26.46 -0.14 -2.60 16 30 C 0.17 3.30 3.44 -67.44 -0.23 3.07 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.08 2.24 6.41 -51.93 -0.33 1.90 16 34 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.96 4.75 -51.92 -0.25 0.72 16 38 H 0.06 0.62 7.53 -51.93 -0.39 0.23 16 39 H 0.18 1.55 6.12 -52.49 -0.32 1.23 16 40 H 0.23 0.26 8.06 -52.48 -0.42 -0.16 16 41 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 42 H 0.09 1.36 7.00 -51.93 -0.36 1.00 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.07 1.30 8.11 -51.93 -0.42 0.87 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -34.97 358.15 -11.45 -46.42 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.79 Total: 1.02 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -5.32 Total: 5.32 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.80 Total: -65.59 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.97 -11.45 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036726737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.440 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds