Wall clock time and date at job start Sat Apr 11 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99871 * 2 1 4 4 H 1.48496 * 109.47139 * 274.59567 * 3 2 1 5 5 H 1.48495 * 109.47242 * 34.60043 * 3 2 1 6 6 H 1.48497 * 109.46784 * 154.59943 * 3 2 1 7 7 C 1.38810 * 119.99319 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99372 * 182.48994 * 7 2 1 9 9 N 1.36932 * 120.00835 * 2.48953 * 7 2 1 10 10 C 1.48164 * 126.40286 * 7.25911 * 9 7 2 11 11 C 1.55284 * 107.04080 * 175.07669 * 10 9 7 12 12 C 1.53741 * 101.84609 * 337.52831 * 11 10 9 13 13 H 1.09001 * 111.30941 * 280.14864 * 12 11 10 14 14 C 1.52247 * 114.74061 * 152.74965 * 12 11 10 15 15 N 1.47721 * 106.36618 * 190.43088 * 14 12 11 16 16 C 1.34774 * 119.67864 * 232.03809 * 15 14 12 17 17 O 1.21547 * 119.99879 * 172.28014 * 16 15 14 18 18 C 1.47963 * 120.00136 * 352.27261 * 16 15 14 19 19 C 1.39740 * 119.42811 * 166.96165 * 18 16 15 20 20 C 1.36983 * 119.60164 * 180.02562 * 19 18 16 21 21 C 1.39904 * 118.36096 * 359.97438 * 20 19 18 22 22 N 1.35431 * 133.81208 * 180.02562 * 21 20 19 23 23 C 1.30211 * 109.57221 * 179.97438 * 22 21 20 24 24 N 1.35991 * 110.18715 * 0.02562 * 23 22 21 25 25 H 0.97000 * 126.30058 * 179.97438 * 24 23 22 26 26 C 1.37948 * 107.41144 * 0.02562 * 24 23 22 27 27 N 1.31884 * 133.83126 * 180.35200 * 26 24 23 28 28 C 1.46597 * 120.63735 * 52.05518 * 15 14 12 29 29 C 1.53961 * 110.57475 * 312.17887 * 28 15 14 30 30 C 1.45465 * 126.40831 * 186.95865 * 9 7 2 31 31 H 1.08999 * 109.26730 * 93.79332 * 30 9 7 32 32 H 0.97007 * 120.00228 * 359.97438 * 1 2 3 33 33 H 1.08993 * 109.91898 * 294.43252 * 10 9 7 34 34 H 1.09002 * 109.91259 * 55.73262 * 10 9 7 35 35 H 1.09003 * 110.95255 * 95.66558 * 11 10 9 36 36 H 1.08998 * 110.95925 * 219.38418 * 11 10 9 37 37 H 1.09001 * 110.06549 * 309.63945 * 14 12 11 38 38 H 1.08992 * 110.07002 * 71.10727 * 14 12 11 39 39 H 1.08005 * 120.19645 * 0.02562 * 19 18 16 40 40 H 1.08006 * 120.82083 * 179.97438 * 20 19 18 41 41 H 1.08007 * 124.90709 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.25291 * 72.45659 * 28 15 14 43 43 H 1.08993 * 109.25677 * 191.92992 * 28 15 14 44 44 H 1.08998 * 109.88335 * 170.51189 * 29 28 15 45 45 H 1.09000 * 109.87587 * 291.51929 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4005 2.1025 -1.3955 5 1 1.4996 2.6226 0.7950 6 1 3.5929 1.4140 0.6006 7 6 2.0101 -1.2022 -0.0005 8 1 3.0894 -1.2027 0.0401 9 7 1.3265 -2.3875 -0.0526 10 6 -0.1309 -2.5536 -0.2620 11 6 -0.4046 -4.0784 -0.3679 12 6 0.9740 -4.6185 -0.7821 13 1 1.1493 -4.4803 -1.8490 14 6 1.2484 -6.0554 -0.3604 15 7 2.6832 -6.2972 -0.6153 16 6 3.0608 -7.3692 -1.3396 17 8 4.2227 -7.4992 -1.6722 18 6 2.0612 -8.3879 -1.7299 19 6 2.3927 -9.3397 -2.6978 20 6 1.4698 -10.2841 -3.0621 21 6 0.2150 -10.2603 -2.4438 22 7 -0.9009 -11.0193 -2.5576 23 6 -1.8151 -10.5757 -1.7435 24 7 -1.3473 -9.5016 -1.0528 25 1 -1.8335 -8.9911 -0.3867 26 6 -0.0543 -9.2709 -1.4747 27 7 0.8671 -8.3841 -1.1523 28 6 3.7002 -5.3827 -0.0877 29 6 3.3202 -3.9208 -0.3858 30 6 1.8960 -3.7193 0.0813 31 1 1.8289 -4.0362 1.1220 32 1 -0.4851 0.8401 0.0004 33 1 -0.6775 -2.1359 0.5835 34 1 -0.4323 -2.0572 -1.1844 35 1 -0.7102 -4.4874 0.5952 36 1 -1.1516 -4.2882 -1.1335 37 1 1.0304 -6.1820 0.7001 38 1 0.6411 -6.7410 -0.9511 39 1 3.3708 -9.3307 -3.1559 40 1 1.7049 -11.0286 -3.8084 41 1 -2.8024 -10.9994 -1.6327 42 1 3.7824 -5.5200 0.9905 43 1 4.6603 -5.6060 -0.5527 44 1 3.9881 -3.2473 0.1513 45 1 3.3864 -3.7318 -1.4572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036748987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:04 Heat of formation + Delta-G solvation = 108.698510 kcal Electronic energy + Delta-G solvation = -29973.071226 eV Core-core repulsion = 25993.165154 eV Total energy + Delta-G solvation = -3979.906072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.73701 -40.48485 -38.74720 -37.83031 -35.35972 -34.12968 -32.57178 -32.15820 -31.43036 -30.23637 -29.43128 -28.02132 -25.62912 -24.58918 -23.76895 -23.24660 -22.17798 -21.97245 -20.37781 -19.95586 -19.31458 -18.98891 -17.77767 -17.24104 -16.58082 -16.17638 -15.83768 -15.30866 -15.15009 -14.99603 -14.94043 -14.47697 -13.99240 -13.80172 -13.65908 -13.30828 -13.23668 -12.98427 -12.72708 -12.51248 -12.17583 -11.84100 -11.61333 -11.51741 -11.39792 -11.13505 -10.82099 -10.75499 -10.60684 -10.31288 -10.11701 -10.06955 -9.86796 -9.74575 -9.60666 -9.32807 -8.96463 -8.80827 -8.62051 -8.44152 -6.81503 -5.72398 -3.05456 0.12047 0.88475 2.09208 2.17978 2.78972 2.99820 3.39850 3.45323 3.46878 3.57417 3.67475 3.95425 4.19583 4.49752 4.51902 4.68820 4.73120 5.06619 5.19459 5.27953 5.36471 5.37336 5.44061 5.56339 5.62516 5.70204 5.70999 5.79621 5.89167 5.91799 6.10069 6.14208 6.23040 6.25667 6.33030 6.45623 6.47746 6.59832 6.64002 6.67738 6.89800 7.09040 7.23811 7.30616 7.47556 7.51152 7.63206 7.79068 8.13156 8.24321 9.19401 9.83171 10.51774 11.40756 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.002951 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.096713 B = 9485.402479 C =10660.733030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.178 3.822 11 C -0.133 4.133 12 C -0.127 4.127 13 H 0.076 0.924 14 C 0.100 3.900 15 N -0.583 5.583 16 C 0.568 3.432 17 O -0.538 6.538 18 C 0.124 3.876 19 C -0.123 4.123 20 C -0.026 4.026 21 C 0.022 3.978 22 N -0.493 5.493 23 C 0.286 3.714 24 N -0.586 5.586 25 H 0.433 0.567 26 C 0.229 3.771 27 N -0.437 5.437 28 C 0.114 3.886 29 C -0.129 4.129 30 C 0.167 3.833 31 H 0.018 0.982 32 H 0.251 0.749 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.149 0.851 41 H 0.227 0.773 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 -22.325 -2.374 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.148 4.148 13 H 0.094 0.906 14 C -0.022 4.022 15 N -0.313 5.313 16 C 0.354 3.646 17 O -0.415 6.415 18 C -0.023 4.023 19 C -0.147 4.147 20 C -0.054 4.054 21 C -0.099 4.099 22 N -0.213 5.213 23 C -0.002 4.002 24 N -0.201 5.201 25 H 0.273 0.727 26 C -0.009 4.009 27 N -0.154 5.154 28 C -0.009 4.009 29 C -0.168 4.168 30 C 0.059 3.941 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.147 0.853 39 H 0.175 0.825 40 H 0.167 0.833 41 H 0.243 0.757 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.267 -22.205 -2.440 22.576 hybrid contribution 0.132 1.404 0.373 1.459 sum -3.135 -20.801 -2.067 21.137 Atomic orbital electron populations 1.69941 1.04905 1.24978 1.57087 1.24804 0.95674 0.97653 1.02326 0.86132 0.78678 0.83702 0.77466 1.21723 1.21759 1.20608 1.19020 0.90414 0.82354 1.43501 0.90402 1.44189 1.03419 0.99605 1.84620 1.21504 0.84570 0.88147 1.00461 1.22672 0.95104 0.99648 0.99749 1.22638 0.97740 0.94046 1.00370 0.90603 1.22762 0.79702 0.97477 1.02223 1.48173 1.08735 1.23838 1.50550 1.17783 0.86759 0.81436 0.78632 1.90778 1.18119 1.77224 1.55409 1.21017 0.89705 0.96374 0.95252 1.21560 1.01427 0.94131 0.97573 1.20470 0.89159 0.97909 0.97843 1.19883 0.95430 0.95640 0.98988 1.70456 0.99895 1.27887 1.23017 1.25581 1.00007 0.85460 0.89117 1.42904 1.10959 1.28888 1.37306 0.72671 1.19131 0.87924 0.96176 0.97624 1.66709 1.00432 1.20979 1.27269 1.21731 0.91497 0.89254 0.98404 1.21837 0.98987 0.93752 1.02225 1.20506 0.91282 0.86973 0.95323 0.96481 0.93830 0.93185 0.94252 0.92343 0.92433 0.91525 0.85348 0.82464 0.83297 0.75677 0.91652 0.89174 0.90462 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.53 55.49 0.58 -26.36 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.16 9.90 -15.06 -0.15 -6.31 16 8 H 0.08 2.06 7.17 -52.48 -0.38 1.69 16 9 N -0.59 -14.89 3.35 -163.46 -0.55 -15.44 16 10 C 0.18 4.23 5.44 -1.92 -0.01 4.22 16 11 C -0.13 -2.39 6.54 -25.14 -0.16 -2.55 16 12 C -0.13 -2.24 2.85 -89.53 -0.26 -2.50 16 13 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 14 C 0.10 1.48 5.26 -3.76 -0.02 1.46 16 15 N -0.58 -8.96 3.00 -173.55 -0.52 -9.48 16 16 C 0.57 8.71 7.60 -12.28 -0.09 8.62 16 17 O -0.54 -9.26 15.70 5.32 0.08 -9.18 16 18 C 0.12 1.63 6.49 -82.97 -0.54 1.09 16 19 C -0.12 -1.35 9.54 -39.48 -0.38 -1.73 16 20 C -0.03 -0.26 10.16 -39.41 -0.40 -0.66 16 21 C 0.02 0.24 7.25 -84.57 -0.61 -0.37 16 22 N -0.49 -4.82 11.27 -11.93 -0.13 -4.95 16 23 C 0.29 1.69 12.96 -89.74 -1.16 0.52 16 24 N -0.59 -4.00 6.22 -13.20 -0.08 -4.08 16 25 H 0.43 1.75 8.96 -40.82 -0.37 1.38 16 26 C 0.23 2.47 8.46 -155.73 -1.32 1.15 16 27 N -0.44 -5.41 6.18 -8.82 -0.05 -5.46 16 28 C 0.11 1.76 6.34 -3.49 -0.02 1.74 16 29 C -0.13 -2.33 5.45 -27.12 -0.15 -2.48 16 30 C 0.17 3.40 2.55 -68.29 -0.17 3.22 16 31 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.05 1.32 7.37 -51.93 -0.38 0.93 16 34 H 0.04 1.04 7.70 -51.93 -0.40 0.64 16 35 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.13 1.79 4.23 -77.62 -0.33 1.47 16 39 H 0.16 1.54 7.67 -52.48 -0.40 1.13 16 40 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 41 H 0.23 0.13 8.06 -52.48 -0.42 -0.29 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.39 6.92 -51.93 -0.36 1.03 16 44 H 0.08 1.41 7.63 -51.93 -0.40 1.01 16 45 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 LS Contribution 358.12 15.07 5.40 5.40 Total: -1.00 -34.83 358.12 -11.77 -46.61 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.93 Total: 0.76 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -5.54 Total: 5.09 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -0.76 Total: -65.77 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.83 -11.77 -46.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036748987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.306 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds