Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00166 * 2 1 4 4 H 1.48501 * 109.46815 * 270.00496 * 3 2 1 5 5 H 1.48504 * 109.46793 * 30.00080 * 3 2 1 6 6 H 1.48502 * 109.47205 * 150.00157 * 3 2 1 7 7 C 1.38810 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99989 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00419 * 359.97438 * 7 2 1 10 10 C 1.48263 * 126.39272 * 359.97119 * 9 7 2 11 11 C 1.55282 * 106.99480 * 184.94043 * 10 9 7 12 12 C 1.53742 * 101.87592 * 22.49427 * 11 10 9 13 13 H 1.08994 * 111.31134 * 79.81819 * 12 11 10 14 14 C 1.52235 * 114.74337 * 207.22157 * 12 11 10 15 15 N 1.47717 * 106.37216 * 169.57683 * 14 12 11 16 16 C 1.34776 * 119.69172 * 127.93303 * 15 14 12 17 17 O 1.21534 * 120.00212 * 180.23655 * 16 15 14 18 18 C 1.47978 * 119.99355 * 0.23917 * 16 15 14 19 19 C 1.39731 * 119.42193 * 202.99516 * 18 16 15 20 20 C 1.36991 * 119.59565 * 179.70546 * 19 18 16 21 21 C 1.39893 * 118.35881 * 0.57175 * 20 19 18 22 22 N 1.35438 * 133.81161 * 179.71603 * 21 20 19 23 23 C 1.30219 * 109.57576 * 179.97438 * 22 21 20 24 24 N 1.35989 * 110.18169 * 359.97438 * 23 22 21 25 25 H 0.96997 * 126.29731 * 180.02562 * 24 23 22 26 26 C 1.37947 * 107.41527 * 0.02562 * 24 23 22 27 27 N 1.31883 * 133.83026 * 180.02562 * 26 24 23 28 28 C 1.46599 * 120.62449 * 307.96452 * 15 14 12 29 29 C 1.53956 * 110.58170 * 47.80235 * 28 15 14 30 30 C 1.45468 * 126.40960 * 180.02562 * 9 7 2 31 31 H 1.09002 * 108.77075 * 265.95581 * 30 9 7 32 32 H 0.96999 * 119.99704 * 359.97438 * 1 2 3 33 33 H 1.09007 * 109.94867 * 65.60274 * 10 9 7 34 34 H 1.09004 * 109.93208 * 304.27523 * 10 9 7 35 35 H 1.08999 * 110.96149 * 264.33240 * 11 10 9 36 36 H 1.09008 * 110.95366 * 140.64517 * 11 10 9 37 37 H 1.09004 * 110.07094 * 288.78453 * 14 12 11 38 38 H 1.09002 * 110.07270 * 50.36045 * 14 12 11 39 39 H 1.07998 * 120.20316 * 0.02562 * 19 18 16 40 40 H 1.08005 * 120.82247 * 180.28584 * 20 19 18 41 41 H 1.08005 * 124.90705 * 179.97438 * 23 22 21 42 42 H 1.09006 * 109.25343 * 168.08543 * 28 15 14 43 43 H 1.09002 * 109.25434 * 287.51343 * 28 15 14 44 44 H 1.08994 * 109.87939 * 68.39834 * 29 28 15 45 45 H 1.08994 * 109.88438 * 189.48789 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1478 -2.5532 0.0006 11 6 -0.4339 -4.0741 0.1280 12 6 0.8689 -4.5892 0.7612 13 1 0.8865 -4.4064 1.8356 14 6 1.2012 -6.0406 0.4439 15 7 2.5831 -6.2641 0.9157 16 6 2.8501 -7.3030 1.7316 17 8 3.9843 -7.4896 2.1266 18 6 1.7624 -8.2165 2.1464 19 6 1.9029 -8.9634 3.3190 20 6 0.8956 -9.8056 3.7095 21 6 -0.2445 -9.8963 2.9039 22 7 -1.3934 -10.6093 2.9819 23 6 -2.1509 -10.3292 1.9604 24 7 -1.5390 -9.4171 1.1587 25 1 -1.8946 -9.0453 0.3364 26 6 -0.3195 -9.1177 1.7297 27 7 0.6726 -8.3152 1.3966 28 6 3.6667 -5.3660 0.5053 29 6 3.2478 -3.8954 0.6839 30 6 1.9078 -3.7211 -0.0005 31 1 1.9815 -4.0717 -1.0300 32 1 -0.4850 0.8401 0.0004 33 1 -0.5653 -2.1736 -0.9320 34 1 -0.5807 -2.0215 0.8480 35 1 -0.5957 -4.5239 -0.8516 36 1 -1.2850 -4.2571 0.7840 37 1 0.5148 -6.7049 0.9690 38 1 1.1407 -6.2119 -0.6308 39 1 2.7981 -8.8734 3.9164 40 1 0.9814 -10.3887 4.6146 41 1 -3.1245 -10.7592 1.7766 42 1 4.5486 -5.5651 1.1144 43 1 3.9061 -5.5470 -0.5426 44 1 3.1550 -3.6626 1.7447 45 1 3.9873 -3.2407 0.2231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036748988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = 108.038345 kcal Electronic energy + Delta-G solvation = -30003.018713 eV Core-core repulsion = 26023.084014 eV Total energy + Delta-G solvation = -3979.934699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.72944 -40.48270 -38.73283 -37.83192 -35.35275 -34.12556 -32.56875 -32.14401 -31.43965 -30.23388 -29.42165 -28.02491 -25.62701 -24.58989 -23.76581 -23.24636 -22.17028 -21.96828 -20.37093 -19.95529 -19.30970 -18.98222 -17.78661 -17.25510 -16.59656 -16.18650 -15.82297 -15.38080 -15.11275 -14.99372 -14.89380 -14.47738 -13.98194 -13.78142 -13.65963 -13.30488 -13.22518 -12.98479 -12.77398 -12.51414 -12.16046 -11.81535 -11.59596 -11.51253 -11.41721 -11.15116 -10.82110 -10.74940 -10.62342 -10.31582 -10.12353 -10.03474 -9.87297 -9.75782 -9.61054 -9.32471 -8.97570 -8.80511 -8.62438 -8.46364 -6.83433 -5.71820 -3.04498 0.14509 0.89303 2.08371 2.20546 2.78053 2.99245 3.39816 3.45172 3.46685 3.54318 3.69194 3.96739 4.19999 4.49708 4.52605 4.69597 4.73672 5.05203 5.19384 5.28232 5.36146 5.37875 5.42527 5.56231 5.62855 5.70663 5.71618 5.78920 5.88046 5.91486 6.09785 6.14190 6.21178 6.25361 6.31746 6.43702 6.47260 6.59799 6.64390 6.67434 6.88454 7.08482 7.24669 7.31371 7.46046 7.54754 7.59736 7.79809 8.12925 8.23980 9.19467 9.83133 10.51177 11.40904 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.002998 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.863379 B = 9338.458459 C =10457.612722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.178 3.822 11 C -0.134 4.134 12 C -0.127 4.127 13 H 0.076 0.924 14 C 0.098 3.902 15 N -0.582 5.582 16 C 0.568 3.432 17 O -0.538 6.538 18 C 0.126 3.874 19 C -0.124 4.124 20 C -0.026 4.026 21 C 0.022 3.978 22 N -0.492 5.492 23 C 0.286 3.714 24 N -0.586 5.586 25 H 0.433 0.567 26 C 0.229 3.771 27 N -0.439 5.439 28 C 0.114 3.886 29 C -0.128 4.128 30 C 0.167 3.833 31 H 0.020 0.980 32 H 0.251 0.749 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.129 0.871 38 H 0.068 0.932 39 H 0.157 0.843 40 H 0.149 0.851 41 H 0.227 0.773 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -21.743 2.892 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.148 4.148 13 H 0.095 0.905 14 C -0.024 4.024 15 N -0.312 5.312 16 C 0.354 3.646 17 O -0.416 6.416 18 C -0.022 4.022 19 C -0.148 4.148 20 C -0.053 4.053 21 C -0.100 4.100 22 N -0.212 5.212 23 C -0.002 4.002 24 N -0.201 5.201 25 H 0.273 0.727 26 C -0.008 4.008 27 N -0.155 5.155 28 C -0.009 4.009 29 C -0.167 4.167 30 C 0.059 3.941 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.145 0.855 38 H 0.086 0.914 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.243 0.757 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.750 -21.655 2.994 22.181 hybrid contribution 0.202 1.330 -0.516 1.441 sum -3.548 -20.325 2.478 20.781 Atomic orbital electron populations 1.69937 1.04887 1.24970 1.57255 1.24783 0.95684 0.97616 1.02422 0.86151 0.78636 0.83651 0.77540 1.21664 1.21743 1.20683 1.19014 0.90398 0.82333 1.43459 0.90359 1.44250 1.01606 0.99541 1.86618 1.21534 0.84035 0.88211 1.00879 1.22682 0.95663 0.99806 0.99102 1.22686 0.97764 0.93950 1.00385 0.90543 1.22753 0.81740 0.97528 1.00404 1.48192 1.10601 1.26425 1.45981 1.17784 0.86828 0.81013 0.78951 1.90781 1.21006 1.73326 1.56459 1.20987 0.90978 0.97203 0.93005 1.21538 1.00367 0.96020 0.96847 1.20464 0.89497 0.96728 0.98619 1.19868 0.95655 0.98407 0.96037 1.70458 1.03000 1.25319 1.22439 1.25578 0.99118 0.89224 0.86278 1.42896 1.14340 1.38019 1.24807 0.72706 1.19096 0.89389 0.98147 0.94177 1.66610 0.99563 1.16643 1.32703 1.21732 0.89545 0.89433 1.00168 1.21871 0.99253 0.93605 1.01970 1.20650 0.91257 0.87096 0.95124 0.96278 0.93824 0.94414 0.92802 0.92455 0.92431 0.85498 0.91387 0.82566 0.83281 0.75679 0.89192 0.91638 0.91436 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.44 55.49 0.58 -26.36 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.12 9.88 -15.06 -0.15 -6.27 16 8 H 0.08 2.06 7.21 -52.48 -0.38 1.69 16 9 N -0.60 -14.89 3.35 -163.05 -0.55 -15.44 16 10 C 0.18 4.24 5.45 -1.86 -0.01 4.23 16 11 C -0.13 -2.41 6.53 -25.14 -0.16 -2.57 16 12 C -0.13 -2.24 2.85 -89.38 -0.26 -2.50 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.10 1.44 5.41 -3.77 -0.02 1.42 16 15 N -0.58 -8.95 3.00 -173.55 -0.52 -9.47 16 16 C 0.57 8.76 7.57 -12.27 -0.09 8.67 16 17 O -0.54 -9.32 15.85 5.34 0.08 -9.23 16 18 C 0.13 1.67 6.39 -82.97 -0.53 1.14 16 19 C -0.12 -1.38 9.54 -39.48 -0.38 -1.76 16 20 C -0.03 -0.26 10.16 -39.41 -0.40 -0.66 16 21 C 0.02 0.24 7.25 -84.57 -0.61 -0.37 16 22 N -0.49 -4.88 11.27 -11.93 -0.13 -5.01 16 23 C 0.29 1.72 12.96 -89.74 -1.16 0.55 16 24 N -0.59 -4.06 6.22 -13.20 -0.08 -4.14 16 25 H 0.43 1.76 8.96 -40.82 -0.37 1.39 16 26 C 0.23 2.50 8.46 -155.73 -1.32 1.19 16 27 N -0.44 -5.48 6.37 -8.82 -0.06 -5.54 16 28 C 0.11 1.76 6.33 -3.49 -0.02 1.74 16 29 C -0.13 -2.30 5.48 -27.01 -0.15 -2.45 16 30 C 0.17 3.37 2.55 -68.02 -0.17 3.20 16 31 H 0.02 0.41 7.94 -51.93 -0.41 0.00 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.04 0.98 7.77 -51.92 -0.40 0.58 16 34 H 0.05 1.43 7.22 -51.93 -0.37 1.06 16 35 H 0.06 0.95 8.11 -51.93 -0.42 0.52 16 36 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.13 1.78 4.10 -76.93 -0.32 1.47 16 38 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 39 H 0.16 1.54 7.78 -52.49 -0.41 1.13 16 40 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.23 0.15 8.06 -52.48 -0.42 -0.27 16 42 H 0.09 1.38 6.94 -51.93 -0.36 1.02 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 45 H 0.08 1.40 7.62 -51.93 -0.40 1.00 16 LS Contribution 358.41 15.07 5.40 5.40 Total: -1.00 -34.80 358.41 -11.76 -46.55 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -5.93 Total: 0.98 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -5.53 Total: 5.20 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.76 Total: -65.96 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.80 -11.76 -46.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036748988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.593 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds