Wall clock time and date at job start Sat Apr 11 2020 06:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48496 * 109.47192 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47045 * 239.99618 * 3 2 1 6 6 H 1.48510 * 109.47114 * 120.00073 * 3 2 1 7 7 C 1.38814 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99918 * 147.81924 * 7 2 1 9 9 N 1.36939 * 120.00261 * 327.82107 * 7 2 1 10 10 C 1.46867 * 125.33605 * 343.60860 * 9 7 2 11 11 C 1.54462 * 106.66456 * 195.33125 * 10 9 7 12 12 C 1.53388 * 102.53388 * 332.27388 * 11 10 9 13 13 H 1.08999 * 105.69836 * 277.66067 * 12 11 10 14 14 C 1.49273 * 114.27912 * 161.97257 * 12 11 10 15 15 N 1.45263 * 114.71640 * 258.58671 * 14 12 11 16 16 C 1.34775 * 120.15570 * 143.67456 * 15 14 12 17 17 O 1.21538 * 120.00163 * 180.69988 * 16 15 14 18 18 C 1.47979 * 120.00102 * 0.69738 * 16 15 14 19 19 C 1.39727 * 119.42958 * 188.49390 * 18 16 15 20 20 C 1.36991 * 119.59693 * 179.72338 * 19 18 16 21 21 C 1.39894 * 118.36189 * 0.53473 * 20 19 18 22 22 N 1.35439 * 133.81346 * 179.73250 * 21 20 19 23 23 C 1.30217 * 109.57321 * 179.97438 * 22 21 20 24 24 N 1.35992 * 110.18245 * 359.97438 * 23 22 21 25 25 H 0.97008 * 126.29224 * 180.02562 * 24 23 22 26 26 C 1.37946 * 107.41594 * 0.02562 * 24 23 22 27 27 N 1.31877 * 133.82932 * 179.97438 * 26 24 23 28 28 C 1.46820 * 119.54109 * 323.90846 * 15 14 12 29 29 C 1.52967 * 107.40293 * 54.77264 * 28 15 14 30 30 C 1.48003 * 125.33661 * 163.30148 * 9 7 2 31 31 H 1.09003 * 110.23232 * 303.30882 * 30 9 7 32 32 H 0.97008 * 119.99838 * 174.57479 * 1 2 3 33 33 H 1.09008 * 110.01969 * 314.63519 * 10 9 7 34 34 H 1.08997 * 110.01863 * 75.98125 * 10 9 7 35 35 H 1.09003 * 110.79600 * 90.53196 * 11 10 9 36 36 H 1.09004 * 110.79786 * 214.00744 * 11 10 9 37 37 H 1.09003 * 108.44706 * 20.47835 * 14 12 11 38 38 H 1.08999 * 108.44609 * 137.79601 * 14 12 11 39 39 H 1.08000 * 120.19858 * 359.97438 * 19 18 16 40 40 H 1.08004 * 120.81681 * 180.25746 * 20 19 18 41 41 H 1.07998 * 124.90722 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.87343 * 295.29552 * 28 15 14 43 43 H 1.08998 * 109.93468 * 174.27639 * 28 15 14 44 44 H 1.09001 * 109.38660 * 178.38444 * 29 28 15 45 45 H 1.09001 * 109.38386 * 58.70037 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 2.9658 -1.2742 -0.4976 9 7 1.4833 -2.2968 0.6326 10 6 0.3935 -2.2666 1.6166 11 6 0.4039 -3.6360 2.3312 12 6 0.9967 -4.5641 1.2635 13 1 0.1660 -4.8298 0.6096 14 6 1.5186 -5.8574 1.7957 15 7 2.9623 -5.9141 1.9458 16 6 3.5096 -6.5772 2.9836 17 8 4.7176 -6.6121 3.1135 18 6 2.6399 -7.2629 3.9651 19 6 3.2029 -7.7930 5.1288 20 6 2.4001 -8.4235 6.0424 21 6 1.0321 -8.5239 5.7674 22 7 -0.0191 -9.0685 6.4253 23 6 -1.1068 -8.8922 5.7314 24 7 -0.8265 -8.2221 4.5817 25 1 -1.4632 -7.9678 3.8955 26 6 0.5298 -7.9706 4.5706 27 7 1.3399 -7.3676 3.7226 28 6 3.8193 -5.2400 0.9625 29 6 3.3738 -3.7783 0.8932 30 6 1.9186 -3.6963 0.4264 31 1 1.8375 -3.9650 -0.6268 32 1 -0.4850 -0.8364 -0.0794 33 1 0.5643 -1.4677 2.3383 34 1 -0.5608 -2.1155 1.1120 35 1 1.0410 -3.6064 3.2151 36 1 -0.6086 -3.9438 2.5927 37 1 1.0563 -6.0431 2.7653 38 1 1.2192 -6.6558 1.1167 39 1 4.2640 -7.7027 5.3089 40 1 2.8137 -8.8367 6.9504 41 1 -2.0896 -9.2288 6.0267 42 1 3.7028 -5.7095 -0.0142 43 1 4.8612 -5.2951 1.2780 44 1 4.0098 -3.2391 0.1911 45 1 3.4630 -3.3256 1.8808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036748989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:10 Heat of formation + Delta-G solvation = 106.884372 kcal Electronic energy + Delta-G solvation = -30205.880945 eV Core-core repulsion = 26225.896206 eV Total energy + Delta-G solvation = -3979.984739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.76035 -40.56799 -38.81960 -37.88674 -35.57482 -34.15602 -32.85748 -32.23510 -31.47399 -30.29996 -29.44691 -28.24396 -25.69372 -24.49795 -23.80016 -23.53882 -22.46769 -22.00739 -20.51724 -20.26388 -19.07439 -18.49805 -17.71799 -17.52908 -17.21005 -16.24785 -16.00806 -15.42483 -15.31150 -15.01713 -14.70724 -14.50913 -14.06615 -13.84463 -13.63147 -13.29131 -13.22320 -13.03496 -13.02190 -12.63923 -12.34004 -12.06980 -11.74248 -11.63034 -11.40379 -11.20842 -10.94125 -10.63880 -10.50164 -10.39115 -10.21785 -10.03877 -9.99272 -9.73018 -9.54592 -9.34414 -9.04902 -8.87287 -8.47586 -8.26568 -6.92458 -6.09785 -3.11440 0.09853 0.86364 2.07468 2.15546 2.77488 2.99410 3.50735 3.56100 3.57360 3.64396 3.72905 3.92948 4.18111 4.51240 4.58376 4.66852 4.71003 4.96374 5.09635 5.19594 5.22166 5.30559 5.37555 5.47663 5.51038 5.67714 5.69277 5.74753 5.80847 5.87436 5.89289 6.07882 6.11032 6.20332 6.23448 6.34333 6.44600 6.56052 6.58923 6.67310 6.88618 6.94810 7.04962 7.11597 7.21562 7.28668 7.49164 7.83329 8.11759 8.51207 9.02960 9.83300 10.38734 11.20898 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016798 B = 0.003122 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.502406 B = 8967.201168 C = 9938.878540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.024 4.024 3 Si 1.058 2.942 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.144 3.856 11 C -0.122 4.122 12 C -0.107 4.107 13 H 0.061 0.939 14 C 0.101 3.899 15 N -0.574 5.574 16 C 0.568 3.432 17 O -0.537 6.537 18 C 0.125 3.875 19 C -0.123 4.123 20 C -0.025 4.025 21 C 0.022 3.978 22 N -0.492 5.492 23 C 0.286 3.714 24 N -0.586 5.586 25 H 0.432 0.568 26 C 0.229 3.771 27 N -0.439 5.439 28 C 0.108 3.892 29 C -0.134 4.134 30 C 0.170 3.830 31 H 0.040 0.960 32 H 0.268 0.732 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.227 0.773 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 -20.195 10.368 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.227 4.227 3 Si 0.888 3.112 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.222 1.222 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.321 5.321 10 C 0.018 3.982 11 C -0.160 4.160 12 C -0.126 4.126 13 H 0.080 0.920 14 C -0.023 4.023 15 N -0.304 5.304 16 C 0.354 3.646 17 O -0.414 6.414 18 C -0.023 4.023 19 C -0.147 4.147 20 C -0.053 4.053 21 C -0.099 4.099 22 N -0.212 5.212 23 C -0.002 4.002 24 N -0.201 5.201 25 H 0.273 0.727 26 C -0.009 4.009 27 N -0.156 5.156 28 C -0.015 4.015 29 C -0.175 4.175 30 C 0.063 3.937 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.072 0.928 39 H 0.176 0.824 40 H 0.167 0.833 41 H 0.243 0.757 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.855 -18.526 10.458 21.355 hybrid contribution -0.265 -1.371 -0.675 1.551 sum -2.120 -19.897 9.783 22.273 Atomic orbital electron populations 1.70805 1.06855 1.30011 1.47381 1.25664 0.96223 1.01014 0.99749 0.83619 0.75019 0.76330 0.76235 1.21209 1.22013 1.22178 1.19653 1.02329 0.89084 1.35404 0.91729 1.44778 1.41271 1.00613 1.45400 1.21258 0.92358 0.93402 0.91161 1.22411 0.99158 0.96869 0.97602 1.20807 0.99241 0.94609 0.97993 0.92018 1.21549 0.79376 0.95731 1.05614 1.47576 1.08099 1.50142 1.24588 1.17714 0.86809 0.79424 0.80639 1.90780 1.13402 1.62471 1.74762 1.21043 0.88011 0.98032 0.95172 1.21556 1.02333 0.97770 0.92991 1.20480 0.89208 0.96063 0.99507 1.19881 0.94938 1.01575 0.93548 1.70462 0.97281 1.23443 1.29996 1.25585 1.00106 0.92625 0.81863 1.42903 1.06300 1.49045 1.21843 0.72720 1.19171 0.86123 1.00692 0.94864 1.66784 1.03530 1.14926 1.30343 1.21795 0.95279 0.93452 0.90943 1.22315 0.99116 0.93299 1.02729 1.20473 0.91562 0.86059 0.95602 0.94179 0.92082 0.94327 0.95445 0.92393 0.92038 0.84843 0.92849 0.82391 0.83254 0.75672 0.91380 0.89096 0.91037 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.40 12.98 55.49 0.72 -26.68 16 2 C -0.02 -0.69 5.08 -17.43 -0.09 -0.78 16 3 Si 1.06 25.54 30.02 -169.99 -5.10 20.43 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.34 -9.40 9.54 -15.06 -0.14 -9.54 16 8 H 0.06 1.80 7.74 -52.49 -0.41 1.39 16 9 N -0.60 -14.81 2.95 -164.00 -0.48 -15.29 16 10 C 0.14 3.34 5.62 -3.08 -0.02 3.32 16 11 C -0.12 -2.18 6.37 -25.76 -0.16 -2.35 16 12 C -0.11 -1.81 2.45 -92.87 -0.23 -2.03 16 13 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 14 C 0.10 1.45 5.16 -6.54 -0.03 1.42 16 15 N -0.57 -8.85 2.99 -177.70 -0.53 -9.38 16 16 C 0.57 8.79 7.65 -12.27 -0.09 8.69 16 17 O -0.54 -9.33 15.71 5.33 0.08 -9.25 16 18 C 0.12 1.65 6.60 -82.96 -0.55 1.10 16 19 C -0.12 -1.36 9.55 -39.48 -0.38 -1.73 16 20 C -0.03 -0.25 10.16 -39.41 -0.40 -0.65 16 21 C 0.02 0.24 7.25 -84.57 -0.61 -0.37 16 22 N -0.49 -4.82 11.27 -11.93 -0.13 -4.96 16 23 C 0.29 1.69 12.96 -89.74 -1.16 0.53 16 24 N -0.59 -4.00 6.22 -13.21 -0.08 -4.08 16 25 H 0.43 1.74 8.96 -40.82 -0.37 1.37 16 26 C 0.23 2.47 8.46 -155.74 -1.32 1.15 16 27 N -0.44 -5.42 5.99 -8.82 -0.05 -5.48 16 28 C 0.11 1.68 6.43 -3.88 -0.02 1.66 16 29 C -0.13 -2.51 5.18 -26.72 -0.14 -2.65 16 30 C 0.17 3.44 3.41 -67.70 -0.23 3.21 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.27 8.08 6.18 -40.82 -0.25 7.83 16 33 H 0.04 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.03 0.69 6.37 -51.93 -0.33 0.36 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.14 1.87 3.99 -80.46 -0.32 1.55 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.16 1.56 7.63 -52.49 -0.40 1.16 16 40 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.23 0.14 8.06 -52.49 -0.42 -0.28 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 44 H 0.07 1.38 7.87 -51.93 -0.41 0.97 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -35.57 358.21 -11.63 -47.20 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.87 Total: 1.11 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -5.58 Total: 0.98 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.56 Total: -65.87 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.10 Total: 20.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.57 -11.63 -47.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036748989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.087 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds