Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00369 * 2 1 4 4 H 1.48493 * 109.47564 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46781 * 300.00391 * 3 2 1 6 6 H 1.48506 * 109.47101 * 59.99787 * 3 2 1 7 7 C 1.38812 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.47663 * 126.19929 * 359.97438 * 9 7 2 11 11 C 1.54644 * 106.93887 * 178.36119 * 10 9 7 12 12 C 1.56267 * 102.20602 * 335.91515 * 11 10 9 13 13 H 1.08997 * 112.61638 * 158.27058 * 12 11 10 14 14 C 1.51872 * 106.81860 * 282.54937 * 12 11 10 15 15 N 1.43527 * 116.04548 * 130.06547 * 14 12 11 16 16 C 1.34770 * 115.76319 * 180.54056 * 15 14 12 17 17 O 1.21538 * 120.00470 * 0.02562 * 16 15 14 18 18 C 1.47979 * 119.99731 * 180.02562 * 16 15 14 19 19 C 1.39734 * 119.42837 * 180.02562 * 18 16 15 20 20 C 1.36987 * 119.60229 * 179.97438 * 19 18 16 21 21 C 1.39907 * 118.35465 * 359.97438 * 20 19 18 22 22 N 1.35434 * 133.80689 * 180.02562 * 21 20 19 23 23 C 1.30214 * 109.57576 * 179.97438 * 22 21 20 24 24 N 1.35999 * 110.17826 * 0.02562 * 23 22 21 25 25 H 0.97001 * 126.29248 * 180.02562 * 24 23 22 26 26 C 1.37939 * 107.41387 * 359.97438 * 24 23 22 27 27 N 1.31885 * 133.82866 * 180.34996 * 26 24 23 28 28 C 1.44221 * 128.47251 * 0.56304 * 15 14 12 29 29 C 1.51864 * 112.74934 * 6.20384 * 28 15 14 30 30 C 1.46661 * 126.19820 * 179.97438 * 9 7 2 31 31 H 1.09001 * 108.98356 * 90.75376 * 30 9 7 32 32 H 0.97000 * 119.99299 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.96628 * 58.99147 * 10 9 7 34 34 H 1.08994 * 109.99284 * 297.74704 * 10 9 7 35 35 H 1.08998 * 110.85655 * 217.73850 * 11 10 9 36 36 H 1.08996 * 110.85958 * 94.09752 * 11 10 9 37 37 H 1.09003 * 108.16955 * 251.77390 * 14 12 11 38 38 H 1.09000 * 108.16438 * 8.36289 * 14 12 11 39 39 H 1.07994 * 120.19521 * 359.97347 * 19 18 16 40 40 H 1.07995 * 120.82150 * 179.97438 * 20 19 18 41 41 H 1.07995 * 124.90854 * 179.97438 * 23 22 21 42 42 H 1.09003 * 108.82833 * 245.36776 * 28 15 14 43 43 H 1.08996 * 108.82722 * 127.05014 * 28 15 14 44 44 H 1.08993 * 109.00183 * 203.59622 * 29 28 15 45 45 H 1.09003 * 108.92922 * 84.79401 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1424 -2.5475 0.0005 11 6 -0.4307 -4.0662 -0.0422 12 6 0.8752 -4.6324 -0.6872 13 1 1.0289 -5.6883 -0.4647 14 6 0.7858 -4.3537 -2.1774 15 7 1.9327 -3.7278 -2.7714 16 6 1.8429 -3.4728 -4.0917 17 8 0.8344 -3.7709 -4.7011 18 6 2.9722 -2.8298 -4.7996 19 6 2.8661 -2.5704 -6.1685 20 6 3.9091 -1.9748 -6.8272 21 6 5.0549 -1.6442 -6.0957 22 7 6.2362 -1.0640 -6.4153 23 6 6.9824 -0.9790 -5.3516 24 7 6.3299 -1.4996 -4.2780 25 1 6.6695 -1.5547 -3.3710 26 6 5.0960 -1.9338 -4.7156 27 7 4.0652 -2.5039 -4.1223 28 6 3.1690 -3.3365 -2.1401 29 6 3.2582 -3.7886 -0.6931 30 6 1.9174 -3.7300 -0.0016 31 1 2.0489 -4.0603 1.0288 32 1 -0.4849 0.8401 0.0004 33 1 -0.5701 -2.0626 -0.8770 34 1 -0.5637 -2.1141 0.9075 35 1 -1.2969 -4.2793 -0.6687 36 1 -0.5707 -4.4632 0.9632 37 1 0.6112 -5.2996 -2.6903 38 1 -0.0791 -3.7138 -2.3522 39 1 1.9671 -2.8379 -6.7039 40 1 3.8483 -1.7657 -7.8850 41 1 7.9762 -0.5569 -5.3259 42 1 3.2533 -2.2502 -2.1749 43 1 4.0004 -3.7697 -2.6960 44 1 3.9596 -3.1447 -0.1627 45 1 3.6274 -4.8139 -0.6651 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036748990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 117.174891 kcal Electronic energy + Delta-G solvation = -31089.182540 eV Core-core repulsion = 27109.644031 eV Total energy + Delta-G solvation = -3979.538509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47187 -40.49260 -38.67523 -37.53035 -35.16459 -33.79970 -32.87538 -31.82689 -31.35500 -30.23477 -29.26480 -27.70186 -25.54386 -24.65052 -23.81699 -22.95735 -22.62203 -21.70243 -20.34609 -19.97752 -18.74778 -17.98501 -17.51495 -16.98212 -16.38483 -16.14479 -15.65850 -15.61316 -15.04715 -14.82342 -14.73775 -14.30107 -14.01644 -13.65708 -13.38459 -13.27062 -12.99363 -12.83015 -12.49623 -12.35669 -12.03274 -11.59602 -11.43410 -11.36510 -11.24207 -11.01085 -10.89150 -10.70688 -10.67590 -10.16222 -9.95089 -9.91276 -9.81568 -9.67478 -9.57602 -9.02451 -8.84249 -8.63007 -8.60197 -7.93198 -6.81188 -5.70965 -3.02579 0.41763 1.16280 2.36564 2.45459 3.08554 3.36118 3.38922 3.40344 3.44148 3.90042 3.92712 4.22719 4.47144 4.49649 4.83431 4.92182 5.00418 5.13780 5.26316 5.32701 5.47832 5.55099 5.56047 5.64821 5.70901 5.80291 5.94972 5.96276 6.02822 6.06704 6.12227 6.32163 6.35307 6.38637 6.47945 6.55814 6.63970 6.71607 6.81686 6.87905 6.95154 7.21979 7.48075 7.55680 7.61369 7.63561 7.79462 7.82685 8.24881 8.51195 9.20657 9.83167 10.51319 11.41704 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010413 B = 0.005003 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.396251 B = 5595.559796 C = 6992.833269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.076 0.924 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.141 3.859 15 N -0.549 5.549 16 C 0.553 3.447 17 O -0.542 6.542 18 C 0.126 3.874 19 C -0.123 4.123 20 C -0.031 4.031 21 C 0.018 3.982 22 N -0.494 5.494 23 C 0.281 3.719 24 N -0.586 5.586 25 H 0.431 0.569 26 C 0.229 3.771 27 N -0.434 5.434 28 C 0.138 3.862 29 C -0.130 4.130 30 C 0.169 3.831 31 H 0.023 0.977 32 H 0.251 0.749 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.225 0.775 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.770 -7.548 -7.953 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.344 4.344 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.133 4.133 13 H 0.100 0.900 14 C 0.018 3.982 15 N -0.277 5.277 16 C 0.338 3.662 17 O -0.420 6.420 18 C -0.022 4.022 19 C -0.147 4.147 20 C -0.058 4.058 21 C -0.103 4.103 22 N -0.214 5.214 23 C -0.007 4.007 24 N -0.200 5.200 25 H 0.272 0.728 26 C -0.008 4.008 27 N -0.150 5.150 28 C 0.015 3.985 29 C -0.169 4.169 30 C 0.061 3.939 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.174 0.826 40 H 0.164 0.836 41 H 0.241 0.759 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.448 -7.363 -8.115 15.847 hybrid contribution 0.543 1.076 0.624 1.357 sum 11.991 -6.287 -7.491 15.473 Atomic orbital electron populations 1.69951 1.04765 1.24726 1.57160 1.24737 0.95601 0.97360 1.02651 0.86172 0.78572 0.84527 0.77231 1.20773 1.21988 1.21798 1.18910 0.90148 0.82152 1.43207 0.90592 1.44360 1.01421 0.99205 1.86638 1.21307 0.84330 0.88236 1.00934 1.23331 0.95674 0.99736 0.99356 1.22442 0.98609 0.98717 0.93526 0.89980 1.20375 0.87678 0.96841 0.93289 1.46327 1.16733 1.56873 1.07766 1.17845 0.85826 0.79882 0.82619 1.90751 1.30369 1.53867 1.67038 1.21014 0.91471 0.98024 0.91700 1.21538 1.00077 0.99029 0.94014 1.20411 0.89463 0.95519 1.00420 1.19874 0.95147 1.02720 0.92598 1.70417 1.02856 1.20484 1.27617 1.25502 0.99070 0.95532 0.80629 1.42862 1.12654 1.51362 1.13143 0.72837 1.19183 0.88791 1.01258 0.91580 1.67440 0.98700 1.11481 1.37391 1.21280 0.83497 1.01470 0.92248 1.21383 0.99417 1.00185 0.95899 1.20235 0.90817 0.87344 0.95473 0.95944 0.93893 0.93520 0.93995 0.91874 0.92237 0.92962 0.91150 0.82617 0.83563 0.75902 0.89929 0.90709 0.90901 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.41 55.49 0.58 -26.36 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.90 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -5.70 8.84 -15.06 -0.13 -5.83 16 8 H 0.08 1.94 6.89 -52.49 -0.36 1.57 16 9 N -0.59 -14.22 3.04 -164.19 -0.50 -14.72 16 10 C 0.18 4.21 4.82 -2.54 -0.01 4.20 16 11 C -0.14 -2.61 6.14 -24.11 -0.15 -2.76 16 12 C -0.11 -1.95 3.80 -88.93 -0.34 -2.29 16 13 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 14 C 0.14 2.60 4.61 -6.19 -0.03 2.57 16 15 N -0.55 -10.36 3.19 -180.24 -0.58 -10.93 16 16 C 0.55 10.55 7.50 -12.27 -0.09 10.45 16 17 O -0.54 -11.22 15.86 5.33 0.08 -11.14 16 18 C 0.13 2.12 6.60 -82.96 -0.55 1.58 16 19 C -0.12 -1.76 9.55 -39.48 -0.38 -2.13 16 20 C -0.03 -0.40 10.16 -39.41 -0.40 -0.80 16 21 C 0.02 0.25 7.25 -84.57 -0.61 -0.36 16 22 N -0.49 -6.15 11.27 -11.93 -0.13 -6.29 16 23 C 0.28 2.42 12.96 -89.73 -1.16 1.25 16 24 N -0.59 -5.81 6.22 -13.21 -0.08 -5.90 16 25 H 0.43 3.08 8.96 -40.82 -0.37 2.71 16 26 C 0.23 3.24 8.46 -155.74 -1.32 1.92 16 27 N -0.43 -6.96 5.32 -8.82 -0.05 -7.01 16 28 C 0.14 2.44 4.15 -5.83 -0.02 2.42 16 29 C -0.13 -2.22 5.10 -28.33 -0.14 -2.36 16 30 C 0.17 3.30 2.92 -68.35 -0.20 3.10 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 33 H 0.05 1.27 7.13 -51.93 -0.37 0.90 16 34 H 0.04 1.11 7.58 -51.93 -0.39 0.72 16 35 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.89 8.04 -51.93 -0.42 0.47 16 38 H 0.07 1.48 6.56 -51.93 -0.34 1.14 16 39 H 0.16 2.02 7.61 -52.49 -0.40 1.63 16 40 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.08 1.71 6.45 -51.93 -0.33 1.38 16 43 H 0.08 1.21 6.15 -51.93 -0.32 0.89 16 44 H 0.07 1.26 7.36 -51.93 -0.38 0.88 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -34.55 352.08 -11.79 -46.35 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.76 Total: 2.94 kcal Atomic # 6 Polarization: 16.30 SS G_CDS: -5.63 Total: 10.66 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -0.76 Total: -71.19 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.55 -11.79 -46.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036748990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.520 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds