Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46971 * 300.00017 * 3 2 1 6 6 H 1.48506 * 109.47355 * 59.99692 * 3 2 1 7 7 C 1.38820 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00085 * 194.59589 * 7 2 1 9 9 N 1.36935 * 119.99733 * 14.60621 * 7 2 1 10 10 C 1.44789 * 120.18136 * 202.42845 * 9 7 2 11 11 C 1.52353 * 111.74409 * 265.09710 * 10 9 7 12 12 C 1.51315 * 112.41465 * 284.33574 * 11 10 9 13 13 H 1.08997 * 111.31481 * 186.29143 * 12 11 10 14 14 C 1.54716 * 107.22239 * 308.33561 * 12 11 10 15 15 C 1.54234 * 104.37381 * 89.46685 * 14 12 11 16 16 C 1.51130 * 105.27742 * 11.32751 * 15 14 12 17 17 H 1.09001 * 106.47366 * 122.81822 * 16 15 14 18 18 C 1.49816 * 120.18770 * 22.40171 * 9 7 2 19 19 N 1.48055 * 109.76510 * 8.26052 * 16 15 14 20 20 C 1.34779 * 127.84472 * 155.03961 * 19 16 15 21 21 O 1.21570 * 120.00120 * 184.12152 * 20 19 16 22 22 C 1.47693 * 119.99817 * 4.11284 * 20 19 16 23 23 C 1.39978 * 120.38118 * 132.65257 * 22 20 19 24 24 N 1.31385 * 121.16048 * 180.25917 * 23 22 20 25 25 C 1.32546 * 121.79309 * 0.03616 * 24 23 22 26 26 N 1.37576 * 133.56973 * 179.97438 * 25 24 23 27 27 H 0.97003 * 126.23116 * 359.97438 * 26 25 24 28 28 C 1.36163 * 107.52836 * 179.97438 * 26 25 24 29 29 N 1.30062 * 110.11091 * 359.97438 * 28 26 25 30 30 C 1.35776 * 109.43788 * 0.02562 * 29 28 26 31 31 C 1.39478 * 133.75127 * 179.97438 * 30 29 28 32 32 H 0.97006 * 119.99468 * 0.02562 * 1 2 3 33 33 H 1.09006 * 108.92989 * 25.23470 * 10 9 7 34 34 H 1.08998 * 108.93571 * 143.90612 * 10 9 7 35 35 H 1.08998 * 108.31696 * 164.17667 * 11 10 9 36 36 H 1.09006 * 109.99577 * 45.64117 * 11 10 9 37 37 H 1.09003 * 110.45345 * 208.19180 * 14 12 11 38 38 H 1.09004 * 110.45383 * 330.74841 * 14 12 11 39 39 H 1.09008 * 110.28368 * 130.51159 * 15 14 12 40 40 H 1.08997 * 110.28787 * 252.52017 * 15 14 12 41 41 H 1.09004 * 109.53914 * 30.85807 * 18 9 7 42 42 H 1.09002 * 109.54750 * 270.58374 * 18 9 7 43 43 H 1.08003 * 119.42260 * 0.27140 * 23 22 20 44 44 H 1.07998 * 124.94371 * 180.02562 * 28 26 25 45 45 H 1.08007 * 120.97110 * 359.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0641 -1.2173 0.2362 9 7 1.3586 -2.3690 -0.2980 10 6 1.8936 -3.6371 0.1516 11 6 2.7525 -4.2986 -0.9189 12 6 1.9234 -4.9168 -2.0234 13 1 2.5463 -5.4785 -2.7194 14 6 0.8686 -5.8266 -1.3500 15 6 -0.3369 -4.8969 -1.1025 16 6 -0.0339 -3.6365 -1.8793 17 1 -0.8660 -3.4904 -2.5681 18 6 0.0879 -2.3406 -1.0910 19 7 1.1671 -3.8431 -2.7201 20 6 1.5019 -3.1997 -3.8561 21 8 2.4917 -3.5366 -4.4764 22 6 0.6662 -2.0855 -4.3474 23 6 1.2567 -0.8829 -4.7529 24 7 0.5276 0.1198 -5.1877 25 6 -0.7934 0.0419 -5.2623 26 7 -1.7735 0.9177 -5.6685 27 1 -1.6359 1.8202 -5.9966 28 6 -2.9718 0.2870 -5.5262 29 7 -2.7924 -0.9145 -5.0615 30 6 -1.4654 -1.1330 -4.8744 31 6 -0.7229 -2.2178 -4.4083 32 1 -0.4850 0.8401 -0.0004 33 1 2.5065 -3.4684 1.0370 34 1 1.0666 -4.2965 0.4149 35 1 3.3457 -5.0817 -0.4465 36 1 3.4303 -3.5665 -1.3580 37 1 0.5894 -6.6433 -2.0157 38 1 1.2490 -6.2166 -0.4059 39 1 -1.2529 -5.3602 -1.4693 40 1 -0.4278 -4.6707 -0.0401 41 1 0.1064 -1.4954 -1.7792 42 1 -0.7618 -2.2436 -0.4151 43 1 2.3307 -0.7775 -4.7077 44 1 -3.9315 0.7208 -5.7654 45 1 -1.2080 -3.1331 -4.1025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039381295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 105.925051 kcal Electronic energy + Delta-G solvation = -31655.998269 eV Core-core repulsion = 27675.971931 eV Total energy + Delta-G solvation = -3980.026338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.26590 -40.43197 -38.49766 -37.25225 -34.57492 -33.83220 -32.72970 -31.43565 -31.10348 -30.64717 -29.65478 -27.06455 -25.74699 -24.46273 -23.87638 -23.68387 -21.97831 -21.33610 -20.95229 -19.44089 -18.71949 -18.64466 -17.50043 -16.94694 -16.25631 -15.79391 -15.60211 -15.45527 -15.31716 -14.86405 -14.17220 -14.00802 -13.76057 -13.57256 -13.31178 -13.09212 -12.93440 -12.75394 -12.45490 -12.33994 -12.14985 -11.65588 -11.52332 -11.24173 -11.07579 -11.02333 -10.85649 -10.78064 -10.70245 -10.39324 -10.21574 -10.07009 -9.76683 -9.74199 -9.33570 -9.06498 -8.76223 -8.52055 -8.46139 -8.06876 -6.72797 -5.76096 -3.14562 0.86463 1.12869 2.56390 2.81313 3.01433 3.34562 3.37680 3.46179 3.47646 3.98372 4.10867 4.45435 4.50625 4.69100 4.77098 4.88407 4.98639 5.06586 5.17695 5.26235 5.37583 5.43791 5.46767 5.61182 5.72463 5.73954 5.82803 5.92589 6.03605 6.06361 6.07461 6.15911 6.23999 6.39937 6.44421 6.48245 6.55165 6.59902 6.74280 6.80659 7.05538 7.08001 7.33318 7.50099 7.67140 7.81385 7.93037 8.04416 8.39269 8.53031 9.19542 9.87820 10.38871 11.32501 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.006303 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.201122 B = 4440.952189 C = 6043.201178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.003 3.997 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.147 3.853 11 C -0.156 4.156 12 C 0.141 3.859 13 H 0.085 0.915 14 C -0.126 4.126 15 C -0.119 4.119 16 C 0.099 3.901 17 H 0.057 0.943 18 C 0.182 3.818 19 N -0.586 5.586 20 C 0.600 3.400 21 O -0.548 6.548 22 C -0.169 4.169 23 C 0.199 3.801 24 N -0.484 5.484 25 C 0.255 3.745 26 N -0.591 5.591 27 H 0.428 0.572 28 C 0.271 3.729 29 N -0.481 5.481 30 C -0.002 4.002 31 C 0.015 3.985 32 H 0.250 0.750 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.172 0.828 44 H 0.224 0.776 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 -5.396 -8.276 11.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.195 4.195 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.197 4.197 12 C 0.038 3.962 13 H 0.103 0.897 14 C -0.164 4.164 15 C -0.157 4.157 16 C -0.005 4.005 17 H 0.075 0.925 18 C 0.057 3.943 19 N -0.318 5.318 20 C 0.388 3.612 21 O -0.427 6.427 22 C -0.177 4.177 23 C 0.031 3.969 24 N -0.196 5.196 25 C 0.019 3.981 26 N -0.205 5.205 27 H 0.267 0.733 28 C -0.018 4.018 29 N -0.200 5.200 30 C -0.121 4.121 31 C -0.012 4.012 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.189 0.811 44 H 0.240 0.760 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.743 -5.228 -8.763 11.709 hybrid contribution 0.608 1.562 -0.016 1.676 sum -5.135 -3.667 -8.779 10.811 Atomic orbital electron populations 1.69997 1.04990 1.24952 1.55402 1.24868 0.95277 0.97880 1.01447 0.86330 0.79492 0.84530 0.77185 1.20293 1.21738 1.21851 1.19189 0.92037 0.84662 1.41434 0.91603 1.44135 1.25664 1.01041 1.60494 1.20452 0.95610 0.88360 0.93700 1.22291 0.99426 1.00124 0.97844 1.21712 0.93480 0.87694 0.93271 0.89734 1.22613 0.95568 0.97312 1.00929 1.21903 0.97773 0.94194 1.01795 1.22067 0.86613 0.97783 0.94010 0.92473 1.21439 0.89165 0.90727 0.92994 1.48810 1.24013 1.36873 1.22108 1.17172 0.84072 0.80818 0.79177 1.90755 1.27935 1.66633 1.57396 1.20549 0.93614 0.97426 1.06124 1.22544 0.99556 0.85418 0.89416 1.66444 1.03297 1.31449 1.18448 1.19117 0.89164 0.90180 0.99659 1.42792 1.05606 1.16185 1.55961 0.73283 1.25410 0.89900 0.89040 0.97413 1.70444 1.15441 1.15446 1.18712 1.19411 0.90837 0.95337 1.06488 1.20861 0.91193 0.96975 0.92214 0.94002 0.93681 0.93721 0.92498 0.91797 0.91662 0.89919 0.91218 0.89343 0.91698 0.93210 0.81065 0.75984 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.83 10.83 55.49 0.60 -25.23 16 2 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 3 Si 0.89 22.20 29.58 -169.99 -5.03 17.18 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.24 -6.55 9.62 -15.06 -0.14 -6.70 16 8 H 0.07 1.79 7.87 -52.49 -0.41 1.37 16 9 N -0.59 -13.97 2.90 -172.70 -0.50 -14.47 16 10 C 0.15 2.85 5.35 -5.29 -0.03 2.82 16 11 C -0.16 -2.70 5.13 -27.91 -0.14 -2.84 16 12 C 0.14 2.27 3.78 -66.68 -0.25 2.02 16 13 H 0.08 1.35 7.99 -51.93 -0.41 0.94 16 14 C -0.13 -1.61 6.02 -25.18 -0.15 -1.76 16 15 C -0.12 -1.67 5.81 -27.03 -0.16 -1.83 16 16 C 0.10 1.74 2.01 -68.44 -0.14 1.60 16 17 H 0.06 0.95 4.65 -51.93 -0.24 0.71 16 18 C 0.18 4.07 4.45 -2.61 -0.01 4.06 16 19 N -0.59 -10.64 2.62 -158.40 -0.41 -11.06 16 20 C 0.60 11.76 7.44 -12.40 -0.09 11.67 16 21 O -0.55 -11.83 17.36 5.30 0.09 -11.74 16 22 C -0.17 -3.15 4.58 -104.85 -0.48 -3.63 16 23 C 0.20 3.71 10.85 -17.09 -0.19 3.53 16 24 N -0.48 -8.85 10.36 -11.96 -0.12 -8.98 16 25 C 0.26 4.28 8.45 -155.63 -1.31 2.96 16 26 N -0.59 -7.03 6.20 -13.22 -0.08 -7.11 16 27 H 0.43 3.59 8.96 -40.82 -0.37 3.22 16 28 C 0.27 2.92 12.97 -89.71 -1.16 1.75 16 29 N -0.48 -7.28 11.29 -12.02 -0.14 -7.42 16 30 C 0.00 -0.03 7.23 -84.69 -0.61 -0.64 16 31 C 0.02 0.26 8.36 -38.59 -0.32 -0.06 16 32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.04 0.90 7.96 -51.93 -0.41 0.49 16 34 H 0.04 0.79 3.93 -51.93 -0.20 0.58 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.94 7.39 -51.93 -0.38 0.56 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 41 H 0.06 1.67 6.13 -51.93 -0.32 1.35 16 42 H 0.05 1.23 7.65 -51.93 -0.40 0.83 16 43 H 0.17 3.01 8.06 -52.48 -0.42 2.59 16 44 H 0.22 1.09 8.06 -52.49 -0.42 0.66 16 45 H 0.15 2.28 6.05 -52.48 -0.32 1.96 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -34.81 351.33 -11.04 -45.85 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.46 Total: 4.73 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: -5.29 Total: 12.95 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -0.66 Total: -74.26 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.81 -11.04 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039381295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.776 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds