Wall clock time and date at job start Sat Apr 11 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47348 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46971 * 300.00017 * 3 2 1 6 6 H 1.48506 * 109.47355 * 59.99692 * 3 2 1 7 7 C 1.38820 * 119.99648 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00085 * 194.59589 * 7 2 1 9 9 N 1.36935 * 119.99733 * 14.60621 * 7 2 1 10 10 C 1.44789 * 120.18136 * 202.42845 * 9 7 2 11 11 C 1.52353 * 111.74409 * 265.09710 * 10 9 7 12 12 C 1.51315 * 112.41465 * 284.33574 * 11 10 9 13 13 H 1.08997 * 111.31481 * 186.29143 * 12 11 10 14 14 C 1.54716 * 107.22239 * 308.33561 * 12 11 10 15 15 C 1.54234 * 104.37381 * 89.46685 * 14 12 11 16 16 C 1.51130 * 105.27742 * 11.32751 * 15 14 12 17 17 H 1.09001 * 106.47366 * 122.81822 * 16 15 14 18 18 C 1.49816 * 120.18770 * 22.40171 * 9 7 2 19 19 N 1.48055 * 109.76510 * 8.26052 * 16 15 14 20 20 C 1.34779 * 127.84472 * 155.03961 * 19 16 15 21 21 O 1.21570 * 120.00120 * 184.12152 * 20 19 16 22 22 C 1.47693 * 119.99817 * 4.11284 * 20 19 16 23 23 C 1.39978 * 120.38118 * 132.65257 * 22 20 19 24 24 N 1.31385 * 121.16048 * 180.25917 * 23 22 20 25 25 C 1.32546 * 121.79309 * 0.03616 * 24 23 22 26 26 N 1.37576 * 133.56973 * 179.97438 * 25 24 23 27 27 H 0.97003 * 126.23116 * 359.97438 * 26 25 24 28 28 C 1.36163 * 107.52836 * 179.97438 * 26 25 24 29 29 N 1.30062 * 110.11091 * 359.97438 * 28 26 25 30 30 C 1.35776 * 109.43788 * 0.02562 * 29 28 26 31 31 C 1.39478 * 133.75127 * 179.97438 * 30 29 28 32 32 H 0.97006 * 119.99468 * 0.02562 * 1 2 3 33 33 H 1.09006 * 108.92989 * 25.23470 * 10 9 7 34 34 H 1.08998 * 108.93571 * 143.90612 * 10 9 7 35 35 H 1.08998 * 108.31696 * 164.17667 * 11 10 9 36 36 H 1.09006 * 109.99577 * 45.64117 * 11 10 9 37 37 H 1.09003 * 110.45345 * 208.19180 * 14 12 11 38 38 H 1.09004 * 110.45383 * 330.74841 * 14 12 11 39 39 H 1.09008 * 110.28368 * 130.51159 * 15 14 12 40 40 H 1.08997 * 110.28787 * 252.52017 * 15 14 12 41 41 H 1.09004 * 109.53914 * 30.85807 * 18 9 7 42 42 H 1.09002 * 109.54750 * 270.58374 * 18 9 7 43 43 H 1.08003 * 119.42260 * 0.27140 * 23 22 20 44 44 H 1.07998 * 124.94371 * 180.02562 * 28 26 25 45 45 H 1.08007 * 120.97110 * 359.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0641 -1.2173 0.2362 9 7 1.3586 -2.3690 -0.2980 10 6 1.8936 -3.6371 0.1516 11 6 2.7525 -4.2986 -0.9189 12 6 1.9234 -4.9168 -2.0234 13 1 2.5463 -5.4785 -2.7194 14 6 0.8686 -5.8266 -1.3500 15 6 -0.3369 -4.8969 -1.1025 16 6 -0.0339 -3.6365 -1.8793 17 1 -0.8660 -3.4904 -2.5681 18 6 0.0879 -2.3406 -1.0910 19 7 1.1671 -3.8431 -2.7201 20 6 1.5019 -3.1997 -3.8561 21 8 2.4917 -3.5366 -4.4764 22 6 0.6662 -2.0855 -4.3474 23 6 1.2567 -0.8829 -4.7529 24 7 0.5276 0.1198 -5.1877 25 6 -0.7934 0.0419 -5.2623 26 7 -1.7735 0.9177 -5.6685 27 1 -1.6359 1.8202 -5.9966 28 6 -2.9718 0.2870 -5.5262 29 7 -2.7924 -0.9145 -5.0615 30 6 -1.4654 -1.1330 -4.8744 31 6 -0.7229 -2.2178 -4.4083 32 1 -0.4850 0.8401 -0.0004 33 1 2.5065 -3.4684 1.0370 34 1 1.0666 -4.2965 0.4149 35 1 3.3457 -5.0817 -0.4465 36 1 3.4303 -3.5665 -1.3580 37 1 0.5894 -6.6433 -2.0157 38 1 1.2490 -6.2166 -0.4059 39 1 -1.2529 -5.3602 -1.4693 40 1 -0.4278 -4.6707 -0.0401 41 1 0.1064 -1.4954 -1.7792 42 1 -0.7618 -2.2436 -0.4151 43 1 2.3307 -0.7775 -4.7077 44 1 -3.9315 0.7208 -5.7654 45 1 -1.2080 -3.1331 -4.1025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039381295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:26 Heat of formation + Delta-G solvation = 83.266400 kcal Electronic energy + Delta-G solvation = -31656.980822 eV Core-core repulsion = 27675.971931 eV Total energy + Delta-G solvation = -3981.008891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.42681 -41.83788 -39.86074 -38.69314 -36.38493 -35.12259 -34.11707 -33.01113 -32.73231 -31.96310 -30.90103 -28.77409 -27.24963 -25.91852 -25.47364 -25.03947 -23.25485 -22.59296 -22.32558 -20.99765 -20.04580 -19.88286 -18.99158 -18.35928 -17.90783 -17.14349 -17.05736 -16.88179 -16.70841 -16.37870 -15.79666 -15.41299 -15.04658 -14.99701 -14.76134 -14.61083 -14.51193 -14.23237 -13.80268 -13.74725 -13.57564 -13.30417 -13.06064 -12.84567 -12.74706 -12.38637 -12.34405 -12.24972 -12.17227 -12.01466 -11.87820 -11.65912 -11.50646 -11.23156 -10.76499 -10.59999 -10.39893 -10.04651 -9.70387 -9.53464 -8.70238 -7.86200 -5.24343 -0.38352 -0.20939 1.34679 1.39227 1.46304 1.48763 1.52650 1.74783 1.97999 2.46839 2.64446 2.95108 3.25249 3.31170 3.43377 3.51078 3.64120 3.70003 3.79721 3.92107 4.05999 4.15092 4.18622 4.22623 4.35108 4.48126 4.63184 4.68919 4.70644 4.73347 4.81345 4.89146 4.95358 5.03291 5.13133 5.14323 5.20677 5.29272 5.34727 5.40206 5.56173 5.57310 5.68592 5.71580 6.12147 6.33601 6.53238 6.58607 6.70229 7.03839 7.14837 7.91198 8.37307 9.18966 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.006303 C = 0.004632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.201122 B = 4440.952189 C = 6043.201178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.043 4.043 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.289 1.289 7 C -0.245 4.245 8 H 0.057 0.943 9 N -0.605 5.605 10 C 0.141 3.859 11 C -0.145 4.145 12 C 0.131 3.869 13 H 0.089 0.911 14 C -0.111 4.111 15 C -0.115 4.115 16 C 0.105 3.895 17 H 0.066 0.934 18 C 0.198 3.802 19 N -0.587 5.587 20 C 0.595 3.405 21 O -0.577 6.577 22 C -0.182 4.182 23 C 0.173 3.827 24 N -0.496 5.496 25 C 0.232 3.768 26 N -0.578 5.578 27 H 0.445 0.555 28 C 0.306 3.694 29 N -0.518 5.518 30 C -0.012 4.012 31 C 0.011 3.989 32 H 0.243 0.757 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.022 0.978 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.023 0.977 43 H 0.167 0.833 44 H 0.287 0.713 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -6.814 -8.468 13.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.228 1.228 6 H -0.216 1.216 7 C -0.376 4.376 8 H 0.075 0.925 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.186 4.186 12 C 0.029 3.971 13 H 0.107 0.893 14 C -0.149 4.149 15 C -0.153 4.153 16 C 0.001 3.999 17 H 0.084 0.916 18 C 0.073 3.927 19 N -0.318 5.318 20 C 0.384 3.616 21 O -0.459 6.459 22 C -0.190 4.190 23 C 0.005 3.995 24 N -0.208 5.208 25 C -0.006 4.006 26 N -0.194 5.194 27 H 0.288 0.712 28 C 0.019 3.981 29 N -0.238 5.238 30 C -0.131 4.131 31 C -0.017 4.017 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.041 0.959 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.184 0.816 44 H 0.302 0.698 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.578 -6.661 -8.939 13.480 hybrid contribution 1.102 2.084 0.017 2.358 sum -6.477 -4.577 -8.922 11.937 Atomic orbital electron populations 1.70134 1.05765 1.24721 1.56889 1.25385 0.95948 1.00070 1.02425 0.85555 0.78833 0.81800 0.76520 1.19739 1.22829 1.21571 1.19368 0.91860 0.86240 1.40106 0.92530 1.44370 1.25882 1.01632 1.60956 1.20685 0.96604 0.87218 0.93984 1.22140 0.98819 0.99990 0.97631 1.21980 0.94581 0.87685 0.92846 0.89333 1.22618 0.93296 0.96731 1.02263 1.21940 0.99946 0.92487 1.00890 1.21964 0.86699 0.97436 0.93806 0.91615 1.21062 0.87608 0.92254 0.91791 1.48916 1.24399 1.36923 1.21538 1.17383 0.83791 0.80896 0.79554 1.90715 1.29131 1.67539 1.58485 1.20495 0.94311 0.97163 1.07063 1.22529 0.99700 0.86210 0.91079 1.66393 1.04381 1.31336 1.18703 1.19477 0.89196 0.91604 1.00324 1.42917 1.04776 1.16596 1.55160 0.71194 1.26757 0.91151 0.87373 0.92849 1.70484 1.14000 1.17900 1.21419 1.19669 0.92083 0.95320 1.06002 1.20965 0.90683 0.97774 0.92258 0.94781 0.94581 0.90846 0.88869 0.95871 0.88893 0.87562 0.87940 0.89802 0.95695 0.95938 0.81600 0.69762 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 10.83 21.65 0.23 -54.26 16 2 C -0.04 -2.45 5.06 84.86 0.43 -2.02 16 3 Si 0.94 47.05 29.58 68.60 2.03 49.08 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 5 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 7 C -0.24 -13.58 9.62 84.04 0.81 -12.77 16 8 H 0.06 3.17 7.87 -2.91 -0.02 3.15 16 9 N -0.60 -29.15 2.90 -700.31 -2.03 -31.18 16 10 C 0.14 5.37 5.35 86.48 0.46 5.84 16 11 C -0.15 -4.86 5.13 29.83 0.15 -4.71 16 12 C 0.13 3.97 3.78 44.61 0.17 4.14 16 13 H 0.09 2.66 7.99 -2.39 -0.02 2.64 16 14 C -0.11 -2.35 6.02 31.60 0.19 -2.16 16 15 C -0.11 -2.85 5.81 30.40 0.18 -2.67 16 16 C 0.10 3.59 2.01 43.81 0.09 3.68 16 17 H 0.07 2.15 4.65 -2.39 -0.01 2.14 16 18 C 0.20 9.07 4.45 85.46 0.38 9.45 16 19 N -0.59 -21.19 2.62 -773.34 -2.02 -23.22 16 20 C 0.60 24.14 7.44 86.74 0.64 24.78 16 21 O -0.58 -25.88 17.36 -3.94 -0.07 -25.95 16 22 C -0.18 -7.12 4.58 -20.01 -0.09 -7.22 16 23 C 0.17 6.90 10.85 85.18 0.92 7.82 16 24 N -0.50 -18.92 10.36 -191.76 -1.99 -20.90 16 25 C 0.23 7.81 8.45 133.91 1.13 8.94 16 26 N -0.58 -12.65 6.20 -195.73 -1.21 -13.86 16 27 H 0.45 6.44 8.96 -92.71 -0.83 5.61 16 28 C 0.31 5.59 12.97 180.03 2.33 7.92 16 29 N -0.52 -14.79 11.29 -191.94 -2.17 -16.96 16 30 C -0.01 -0.40 7.23 39.46 0.29 -0.12 16 31 C 0.01 0.37 8.36 22.91 0.19 0.56 16 32 H 0.24 14.11 8.31 -92.70 -0.77 13.34 16 33 H 0.04 1.42 7.96 -2.38 -0.02 1.40 16 34 H 0.07 2.40 3.93 -2.39 -0.01 2.39 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 1.83 7.39 -2.38 -0.02 1.81 16 39 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.08 2.20 6.17 -2.39 -0.01 2.19 16 41 H 0.02 1.33 6.13 -2.38 -0.01 1.31 16 42 H 0.02 1.15 7.65 -2.39 -0.02 1.13 16 43 H 0.17 6.46 8.06 -2.91 -0.02 6.44 16 44 H 0.29 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.16 4.96 6.05 -2.91 -0.02 4.94 16 Total: -1.00 -81.29 351.33 1.28 -80.00 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.23 Total: 15.78 kcal Atomic # 6 Polarization: 33.20 SS G_CDS: 8.28 Total: 41.48 kcal Atomic # 7 Polarization: -151.20 SS G_CDS: -9.18 Total: -160.39 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.07 Total: -25.95 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -81.29 1.28 -80.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039381295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.271 kcal (2) G-P(sol) polarization free energy of solvation -81.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds