Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48499 * 109.46776 * 274.61559 * 3 2 1 5 5 H 1.48492 * 109.47476 * 34.61643 * 3 2 1 6 6 H 1.48504 * 109.47295 * 154.61707 * 3 2 1 7 7 C 1.38806 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00237 * 205.87763 * 7 2 1 9 9 N 1.37156 * 120.00313 * 25.88101 * 7 2 1 10 10 C 1.44773 * 119.96956 * 7.52654 * 9 7 2 11 11 C 1.51426 * 113.02829 * 267.44081 * 10 9 7 12 12 C 1.51194 * 114.14653 * 294.92158 * 11 10 9 13 13 H 1.09682 * 110.76792 * 179.52738 * 12 11 10 14 14 C 1.54141 * 108.47238 * 301.55735 * 12 11 10 15 15 C 1.54012 * 104.74392 * 92.08437 * 14 12 11 16 16 C 1.52093 * 105.51948 * 12.04432 * 15 14 12 17 17 H 1.09423 * 108.24407 * 122.74811 * 16 15 14 18 18 C 1.49268 * 120.00603 * 187.22263 * 9 7 2 19 19 N 1.47752 * 109.51253 * 5.01841 * 16 15 14 20 20 C 1.34991 * 127.15356 * 158.79221 * 19 16 15 21 21 O 1.21540 * 119.99971 * 180.54910 * 20 19 16 22 22 C 1.47970 * 120.00111 * 0.54012 * 20 19 16 23 23 C 1.39726 * 119.43044 * 180.02562 * 22 20 19 24 24 C 1.36986 * 119.60268 * 179.97438 * 23 22 20 25 25 C 1.39900 * 118.35798 * 0.02562 * 24 23 22 26 26 N 1.35438 * 133.80814 * 180.02562 * 25 24 23 27 27 C 1.30218 * 109.57304 * 179.97438 * 26 25 24 28 28 N 1.35996 * 110.17831 * 0.02562 * 27 26 25 29 29 H 0.97002 * 126.29046 * 180.02562 * 28 27 26 30 30 C 1.37941 * 107.41634 * 359.97438 * 28 27 26 31 31 N 1.31885 * 133.82759 * 180.30828 * 30 28 27 32 32 H 0.96992 * 119.99840 * 0.02562 * 1 2 3 33 33 H 1.08836 * 109.29139 * 145.42195 * 10 9 7 34 34 H 1.09362 * 108.40668 * 27.78379 * 10 9 7 35 35 H 1.09278 * 108.52976 * 173.69678 * 11 10 9 36 36 H 1.09168 * 108.72597 * 56.56082 * 11 10 9 37 37 H 1.09339 * 110.58903 * 211.12496 * 14 12 11 38 38 H 1.09284 * 110.68485 * 332.85728 * 14 12 11 39 39 H 1.09054 * 110.67016 * 252.45157 * 15 14 12 40 40 H 1.09289 * 110.26887 * 130.95618 * 15 14 12 41 41 H 1.09153 * 109.52027 * 16.16073 * 18 9 7 42 42 H 1.09153 * 109.53520 * 256.58872 * 18 9 7 43 43 H 1.08006 * 120.19794 * 0.02562 * 23 22 20 44 44 H 1.08001 * 120.82282 * 179.97438 * 24 23 22 45 45 H 1.07996 * 124.91070 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4000 2.1027 -1.3956 5 1 1.4999 2.6225 0.7953 6 1 3.5931 1.4140 0.6002 7 6 2.0103 -1.2021 0.0005 8 1 3.0091 -1.2488 0.4088 9 7 1.4278 -2.3306 -0.5174 10 6 0.1599 -2.2372 -1.2100 11 6 -1.0297 -2.4654 -0.3013 12 6 -1.1112 -3.8620 0.2720 13 1 -1.9856 -3.9635 0.9263 14 6 -1.1760 -4.8663 -0.8955 15 6 0.2909 -5.2517 -1.1630 16 6 1.0760 -4.7128 0.0230 17 1 1.6068 -5.5477 0.4904 18 6 2.1042 -3.6533 -0.3729 19 7 0.1413 -4.1464 1.0172 20 6 0.3747 -3.9401 2.3307 21 8 -0.4970 -3.4722 3.0367 22 6 1.6916 -4.2840 2.9111 23 6 1.9201 -4.0661 4.2722 24 6 3.1379 -4.3837 4.8133 25 6 4.1190 -4.9202 3.9726 26 7 5.3937 -5.3353 4.1651 27 6 5.8888 -5.7608 3.0383 28 7 4.9647 -5.6466 2.0471 29 1 5.0864 -5.8950 1.1173 30 6 3.8223 -5.1137 2.6070 31 7 2.6338 -4.7971 2.1309 32 1 -0.4849 0.8400 -0.0004 33 1 0.1388 -2.9630 -2.0208 34 1 0.0773 -1.2376 -1.6459 35 1 -1.9428 -2.2681 -0.8684 36 1 -0.9844 -1.7496 0.5217 37 1 -1.7577 -5.7478 -0.6126 38 1 -1.6189 -4.4018 -1.7800 39 1 0.6440 -4.8018 -2.0916 40 1 0.3927 -6.3384 -1.2191 41 1 2.8757 -3.5863 0.3963 42 1 2.5689 -3.9311 -1.3207 43 1 1.1410 -3.6506 4.8942 44 1 3.3359 -4.2231 5.8628 45 1 6.8886 -6.1483 2.9096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039392058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = 116.902206 kcal Electronic energy + Delta-G solvation = -31800.517162 eV Core-core repulsion = 27820.966829 eV Total energy + Delta-G solvation = -3979.550333 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.34471 -40.11898 -38.42400 -37.06463 -34.64760 -33.82121 -32.34820 -31.47791 -30.97273 -30.60388 -29.64510 -27.05918 -25.62660 -24.58557 -23.63000 -23.29628 -21.70699 -21.57163 -20.82590 -19.39488 -18.67977 -18.52552 -17.35817 -16.93294 -16.41147 -15.73390 -15.37214 -15.19759 -14.77367 -14.74451 -14.34814 -14.13404 -13.61599 -13.39262 -13.28948 -12.93209 -12.85435 -12.68733 -12.48689 -12.28795 -11.93526 -11.51224 -11.26820 -11.22748 -11.18580 -10.95765 -10.80125 -10.60518 -10.42995 -10.18624 -10.02311 -9.91958 -9.72650 -9.57283 -9.05265 -8.87837 -8.84963 -8.50467 -8.27210 -7.79235 -6.77843 -5.67406 -2.97047 0.56543 1.30845 2.45550 2.58250 3.28288 3.42777 3.48946 3.51426 3.51845 4.00816 4.16659 4.33353 4.54128 4.63188 4.92622 5.02155 5.08497 5.12800 5.26996 5.28651 5.44764 5.60153 5.64465 5.76364 5.83965 5.90721 6.07643 6.07929 6.13487 6.17940 6.24056 6.32667 6.40829 6.48536 6.59106 6.68026 6.78931 6.87675 6.92766 6.98869 7.17228 7.33839 7.58769 7.70336 7.78158 7.80666 8.24334 8.24895 8.44270 8.76614 9.35580 9.94571 10.41640 11.34708 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.005474 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.243323 B = 5113.878770 C = 6177.986899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.002 4.002 3 Si 0.891 3.109 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.241 4.241 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.187 3.813 11 C -0.144 4.144 12 C 0.138 3.862 13 H 0.075 0.925 14 C -0.125 4.125 15 C -0.121 4.121 16 C 0.120 3.880 17 H 0.081 0.919 18 C 0.140 3.860 19 N -0.562 5.562 20 C 0.598 3.402 21 O -0.540 6.540 22 C 0.144 3.856 23 C -0.124 4.124 24 C -0.030 4.030 25 C 0.015 3.985 26 N -0.493 5.493 27 C 0.277 3.723 28 N -0.587 5.587 29 H 0.429 0.571 30 C 0.234 3.766 31 N -0.438 5.438 32 H 0.250 0.750 33 H 0.003 0.997 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.155 0.845 44 H 0.145 0.855 45 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.285 -15.151 0.981 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.199 4.199 3 Si 0.722 3.278 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.370 4.370 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.060 3.940 11 C -0.185 4.185 12 C 0.036 3.964 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.159 4.159 16 C 0.015 3.985 17 H 0.099 0.901 18 C 0.013 3.987 19 N -0.292 5.292 20 C 0.384 3.616 21 O -0.418 6.418 22 C -0.005 4.005 23 C -0.148 4.148 24 C -0.058 4.058 25 C -0.106 4.106 26 N -0.213 5.213 27 C -0.011 4.011 28 N -0.202 5.202 29 H 0.269 0.731 30 C -0.003 4.003 31 N -0.154 5.154 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.173 0.827 44 H 0.163 0.837 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.991 -14.843 1.390 16.067 hybrid contribution 0.477 0.953 -0.450 1.157 sum 6.468 -13.890 0.940 15.351 Atomic orbital electron populations 1.70135 1.04758 1.24635 1.54367 1.24634 0.95209 0.97688 1.02324 0.86405 0.79290 0.84708 0.77374 1.21810 1.22070 1.20962 1.19239 0.97011 0.86119 1.34676 0.91569 1.44409 1.20998 1.01606 1.64119 1.19896 0.83706 0.99462 0.90887 1.22138 0.98529 0.94111 1.03692 1.21852 0.86375 0.96903 0.91274 0.90716 1.22499 0.96387 0.98571 0.98864 1.22092 0.95426 0.99740 0.98674 1.21926 0.91185 0.96890 0.88537 0.90088 1.21795 0.93903 0.85594 0.97399 1.48380 1.14981 1.59718 1.06091 1.16998 0.85257 0.78696 0.80629 1.90759 1.45143 1.46016 1.59845 1.20990 0.92670 0.96189 0.90654 1.21561 0.97961 1.00056 0.95174 1.20388 0.90218 0.95275 0.99905 1.19818 0.93410 1.04269 0.93115 1.70399 1.07902 1.17890 1.25117 1.25439 0.95874 0.97720 0.82061 1.42815 1.10419 1.54035 1.12956 0.73074 1.19009 0.89071 1.01160 0.91080 1.66682 0.98596 1.12205 1.37871 0.93961 0.97867 0.90625 0.94379 0.86944 0.92296 0.90293 0.90382 0.91951 0.91957 0.96150 0.82690 0.83682 0.76053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 8.43 55.49 0.47 -24.83 16 2 C 0.00 -0.04 4.85 -17.43 -0.08 -0.13 16 3 Si 0.89 22.24 29.63 -169.99 -5.04 17.21 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.61 9.71 -14.96 -0.15 -6.76 16 8 H 0.07 1.85 7.91 -52.49 -0.42 1.44 16 9 N -0.59 -14.25 2.65 -173.07 -0.46 -14.71 16 10 C 0.19 4.34 4.48 -5.76 -0.03 4.32 16 11 C -0.14 -3.24 4.48 -28.44 -0.13 -3.37 16 12 C 0.14 2.69 3.56 -67.15 -0.24 2.45 16 13 H 0.07 1.47 8.08 -51.54 -0.42 1.06 16 14 C -0.12 -1.89 5.99 -25.61 -0.15 -2.05 16 15 C -0.12 -1.78 5.73 -26.66 -0.15 -1.94 16 16 C 0.12 2.10 2.27 -67.78 -0.15 1.95 16 17 H 0.08 1.34 6.27 -51.69 -0.32 1.01 16 18 C 0.14 2.79 5.85 -2.58 -0.02 2.78 16 19 N -0.56 -11.31 2.32 -157.64 -0.37 -11.68 16 20 C 0.60 12.86 7.86 -12.18 -0.10 12.77 16 21 O -0.54 -12.96 16.62 5.33 0.09 -12.87 16 22 C 0.14 2.69 6.72 -82.97 -0.56 2.13 16 23 C -0.12 -2.03 9.55 -39.48 -0.38 -2.40 16 24 C -0.03 -0.44 10.16 -39.41 -0.40 -0.84 16 25 C 0.01 0.22 7.25 -84.58 -0.61 -0.39 16 26 N -0.49 -6.51 11.27 -11.93 -0.13 -6.65 16 27 C 0.28 2.51 12.96 -89.73 -1.16 1.34 16 28 N -0.59 -5.98 6.22 -13.21 -0.08 -6.07 16 29 H 0.43 3.04 8.96 -40.82 -0.37 2.68 16 30 C 0.23 3.48 8.46 -155.74 -1.32 2.16 16 31 N -0.44 -7.44 4.72 -8.83 -0.04 -7.48 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.00 0.07 5.46 -52.02 -0.28 -0.22 16 34 H 0.08 2.01 6.01 -51.72 -0.31 1.70 16 35 H 0.04 0.80 8.15 -51.77 -0.42 0.37 16 36 H 0.11 3.10 6.07 -51.83 -0.31 2.79 16 37 H 0.06 0.78 8.17 -51.74 -0.42 0.36 16 38 H 0.08 1.14 7.68 -51.77 -0.40 0.74 16 39 H 0.08 1.16 6.44 -51.90 -0.33 0.83 16 40 H 0.06 0.76 8.17 -51.77 -0.42 0.34 16 41 H 0.06 1.31 5.86 -51.84 -0.30 1.00 16 42 H 0.02 0.39 7.91 -51.84 -0.41 -0.02 16 43 H 0.16 2.39 7.61 -52.48 -0.40 1.99 16 44 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.22 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -34.59 346.24 -11.49 -46.08 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.52 Total: 3.74 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: -5.62 Total: 12.03 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -0.62 Total: -71.41 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.04 Total: 17.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.59 -11.49 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039392058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.986 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds