Wall clock time and date at job start Sat Apr 11 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99828 * 2 1 4 4 H 1.48499 * 109.46776 * 274.61559 * 3 2 1 5 5 H 1.48492 * 109.47476 * 34.61643 * 3 2 1 6 6 H 1.48504 * 109.47295 * 154.61707 * 3 2 1 7 7 C 1.38806 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00237 * 205.87763 * 7 2 1 9 9 N 1.37156 * 120.00313 * 25.88101 * 7 2 1 10 10 C 1.44773 * 119.96956 * 7.52654 * 9 7 2 11 11 C 1.51426 * 113.02829 * 267.44081 * 10 9 7 12 12 C 1.51194 * 114.14653 * 294.92158 * 11 10 9 13 13 H 1.09682 * 110.76792 * 179.52738 * 12 11 10 14 14 C 1.54141 * 108.47238 * 301.55735 * 12 11 10 15 15 C 1.54012 * 104.74392 * 92.08437 * 14 12 11 16 16 C 1.52093 * 105.51948 * 12.04432 * 15 14 12 17 17 H 1.09423 * 108.24407 * 122.74811 * 16 15 14 18 18 C 1.49268 * 120.00603 * 187.22263 * 9 7 2 19 19 N 1.47752 * 109.51253 * 5.01841 * 16 15 14 20 20 C 1.34991 * 127.15356 * 158.79221 * 19 16 15 21 21 O 1.21540 * 119.99971 * 180.54910 * 20 19 16 22 22 C 1.47970 * 120.00111 * 0.54012 * 20 19 16 23 23 C 1.39726 * 119.43044 * 180.02562 * 22 20 19 24 24 C 1.36986 * 119.60268 * 179.97438 * 23 22 20 25 25 C 1.39900 * 118.35798 * 0.02562 * 24 23 22 26 26 N 1.35438 * 133.80814 * 180.02562 * 25 24 23 27 27 C 1.30218 * 109.57304 * 179.97438 * 26 25 24 28 28 N 1.35996 * 110.17831 * 0.02562 * 27 26 25 29 29 H 0.97002 * 126.29046 * 180.02562 * 28 27 26 30 30 C 1.37941 * 107.41634 * 359.97438 * 28 27 26 31 31 N 1.31885 * 133.82759 * 180.30828 * 30 28 27 32 32 H 0.96992 * 119.99840 * 0.02562 * 1 2 3 33 33 H 1.08836 * 109.29139 * 145.42195 * 10 9 7 34 34 H 1.09362 * 108.40668 * 27.78379 * 10 9 7 35 35 H 1.09278 * 108.52976 * 173.69678 * 11 10 9 36 36 H 1.09168 * 108.72597 * 56.56082 * 11 10 9 37 37 H 1.09339 * 110.58903 * 211.12496 * 14 12 11 38 38 H 1.09284 * 110.68485 * 332.85728 * 14 12 11 39 39 H 1.09054 * 110.67016 * 252.45157 * 15 14 12 40 40 H 1.09289 * 110.26887 * 130.95618 * 15 14 12 41 41 H 1.09153 * 109.52027 * 16.16073 * 18 9 7 42 42 H 1.09153 * 109.53520 * 256.58872 * 18 9 7 43 43 H 1.08006 * 120.19794 * 0.02562 * 23 22 20 44 44 H 1.08001 * 120.82282 * 179.97438 * 24 23 22 45 45 H 1.07996 * 124.91070 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4000 2.1027 -1.3956 5 1 1.4999 2.6225 0.7953 6 1 3.5931 1.4140 0.6002 7 6 2.0103 -1.2021 0.0005 8 1 3.0091 -1.2488 0.4088 9 7 1.4278 -2.3306 -0.5174 10 6 0.1599 -2.2372 -1.2100 11 6 -1.0297 -2.4654 -0.3013 12 6 -1.1112 -3.8620 0.2720 13 1 -1.9856 -3.9635 0.9263 14 6 -1.1760 -4.8663 -0.8955 15 6 0.2909 -5.2517 -1.1630 16 6 1.0760 -4.7128 0.0230 17 1 1.6068 -5.5477 0.4904 18 6 2.1042 -3.6533 -0.3729 19 7 0.1413 -4.1464 1.0172 20 6 0.3747 -3.9401 2.3307 21 8 -0.4970 -3.4722 3.0367 22 6 1.6916 -4.2840 2.9111 23 6 1.9201 -4.0661 4.2722 24 6 3.1379 -4.3837 4.8133 25 6 4.1190 -4.9202 3.9726 26 7 5.3937 -5.3353 4.1651 27 6 5.8888 -5.7608 3.0383 28 7 4.9647 -5.6466 2.0471 29 1 5.0864 -5.8950 1.1173 30 6 3.8223 -5.1137 2.6070 31 7 2.6338 -4.7971 2.1309 32 1 -0.4849 0.8400 -0.0004 33 1 0.1388 -2.9630 -2.0208 34 1 0.0773 -1.2376 -1.6459 35 1 -1.9428 -2.2681 -0.8684 36 1 -0.9844 -1.7496 0.5217 37 1 -1.7577 -5.7478 -0.6126 38 1 -1.6189 -4.4018 -1.7800 39 1 0.6440 -4.8018 -2.0916 40 1 0.3927 -6.3384 -1.2191 41 1 2.8757 -3.5863 0.3963 42 1 2.5689 -3.9311 -1.3207 43 1 1.1410 -3.6506 4.8942 44 1 3.3359 -4.2231 5.8628 45 1 6.8886 -6.1483 2.9096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039392058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:29 Heat of formation + Delta-G solvation = 95.867433 kcal Electronic energy + Delta-G solvation = -31801.429298 eV Core-core repulsion = 27820.966829 eV Total energy + Delta-G solvation = -3980.462469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.36515 -41.59850 -39.75820 -38.55244 -36.49637 -34.91719 -33.87315 -33.05309 -32.40859 -32.12376 -30.81006 -28.85643 -27.13480 -25.90194 -25.42491 -24.49927 -23.05393 -22.60783 -22.29942 -21.03255 -20.14017 -19.57147 -18.69705 -18.33070 -18.16435 -16.97202 -16.84793 -16.71487 -16.35731 -16.01717 -15.82814 -15.34743 -15.23332 -15.06570 -14.77396 -14.30833 -14.27816 -14.09747 -13.94235 -13.65913 -13.38333 -13.19462 -12.93223 -12.83587 -12.68055 -12.37146 -12.29566 -12.18034 -11.98833 -11.96370 -11.75108 -11.48076 -11.44764 -11.19781 -10.72888 -10.30541 -10.18931 -9.95707 -9.67236 -9.34787 -8.73751 -7.77249 -5.06975 -0.59619 0.13647 1.40601 1.42797 1.49898 1.50011 1.51505 1.95236 2.12918 2.51942 2.83149 3.03635 3.24924 3.28853 3.47871 3.71590 3.79061 3.86071 3.94906 4.00777 4.13358 4.22395 4.35926 4.54046 4.58343 4.59070 4.65480 4.80285 4.82392 4.84744 4.97071 5.00537 5.04571 5.10821 5.13913 5.19476 5.33534 5.35935 5.46666 5.51767 5.59172 5.67422 5.84393 6.14295 6.30186 6.37141 6.59090 6.70833 6.74306 7.19473 7.27179 7.99760 8.37306 9.21074 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.005474 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.243323 B = 5113.878770 C = 6177.986899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.051 4.051 3 Si 0.945 3.055 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.055 0.945 9 N -0.601 5.601 10 C 0.196 3.804 11 C -0.131 4.131 12 C 0.131 3.869 13 H 0.062 0.938 14 C -0.113 4.113 15 C -0.115 4.115 16 C 0.122 3.878 17 H 0.096 0.904 18 C 0.140 3.860 19 N -0.567 5.567 20 C 0.584 3.416 21 O -0.585 6.585 22 C 0.105 3.895 23 C -0.132 4.132 24 C -0.032 4.032 25 C 0.011 3.989 26 N -0.530 5.530 27 C 0.315 3.685 28 N -0.575 5.575 29 H 0.446 0.554 30 C 0.214 3.786 31 N -0.438 5.438 32 H 0.241 0.759 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.150 0.850 44 H 0.171 0.829 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.093 -18.167 -0.418 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.246 4.246 3 Si 0.776 3.224 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.073 0.927 9 N -0.325 5.325 10 C 0.070 3.930 11 C -0.171 4.171 12 C 0.028 3.972 13 H 0.080 0.920 14 C -0.151 4.151 15 C -0.153 4.153 16 C 0.018 3.982 17 H 0.114 0.886 18 C 0.015 3.985 19 N -0.296 5.296 20 C 0.372 3.628 21 O -0.466 6.466 22 C -0.042 4.042 23 C -0.156 4.156 24 C -0.059 4.059 25 C -0.110 4.110 26 N -0.250 5.250 27 C 0.028 3.972 28 N -0.191 5.191 29 H 0.289 0.711 30 C -0.025 4.025 31 N -0.153 5.153 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.168 0.832 44 H 0.188 0.812 45 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 8.826 -17.903 -0.070 19.960 hybrid contribution -0.171 1.804 0.017 1.812 sum 8.655 -16.099 -0.053 18.278 Atomic orbital electron populations 1.70365 1.05549 1.24238 1.55598 1.25235 0.95932 1.00073 1.03337 0.85557 0.78117 0.81566 0.77153 1.21332 1.23081 1.20599 1.19341 0.96544 0.87603 1.33991 0.92698 1.44565 1.21370 1.02584 1.63958 1.19731 0.83676 0.98110 0.91491 1.21889 0.98663 0.94964 1.01605 1.21893 0.86146 0.96540 0.92606 0.92012 1.22445 0.97485 0.98188 0.97011 1.22137 0.94067 1.02059 0.97042 1.22041 0.90810 0.96170 0.89224 0.88624 1.21930 0.94180 0.84363 0.98068 1.48562 1.15678 1.59160 1.06156 1.17591 0.86074 0.78077 0.81046 1.90700 1.46843 1.48099 1.61003 1.20642 0.92313 0.99579 0.91621 1.21556 0.98876 1.00604 0.94521 1.20611 0.89391 0.94706 1.01169 1.20128 0.94296 1.03292 0.93253 1.70466 1.07059 1.20265 1.27242 1.26752 0.96857 0.93320 0.80238 1.42921 1.08881 1.53109 1.14180 0.71071 1.19295 0.89528 1.01853 0.91854 1.66490 0.99176 1.11972 1.37707 0.94924 0.94707 0.94536 0.93742 0.92561 0.89582 0.89100 0.89959 0.88098 0.93183 0.93864 0.83182 0.81190 0.70033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.19 8.43 21.65 0.18 -54.01 16 2 C -0.05 -2.92 4.85 84.86 0.41 -2.51 16 3 Si 0.95 47.19 29.63 68.60 2.03 49.22 16 4 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 6 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -13.73 9.71 84.00 0.82 -12.92 16 8 H 0.06 3.14 7.91 -2.91 -0.02 3.12 16 9 N -0.60 -29.34 2.65 -701.47 -1.86 -31.20 16 10 C 0.20 9.20 4.48 86.19 0.39 9.59 16 11 C -0.13 -6.05 4.48 29.49 0.13 -5.92 16 12 C 0.13 5.11 3.56 44.41 0.16 5.27 16 13 H 0.06 2.53 8.08 -2.02 -0.02 2.52 16 14 C -0.11 -3.10 5.99 31.32 0.19 -2.91 16 15 C -0.12 -2.93 5.73 30.64 0.18 -2.76 16 16 C 0.12 4.05 2.27 44.40 0.10 4.15 16 17 H 0.10 2.93 6.27 -2.16 -0.01 2.91 16 18 C 0.14 5.41 5.85 85.79 0.50 5.91 16 19 N -0.57 -23.10 2.32 -770.81 -1.79 -24.89 16 20 C 0.58 26.41 7.86 86.79 0.68 27.10 16 21 O -0.59 -30.24 16.62 -3.84 -0.06 -30.30 16 22 C 0.11 4.09 6.72 41.96 0.28 4.37 16 23 C -0.13 -4.51 9.55 22.34 0.21 -4.30 16 24 C -0.03 -0.91 10.16 22.38 0.23 -0.68 16 25 C 0.01 0.33 7.25 39.69 0.29 0.62 16 26 N -0.53 -12.33 11.27 -191.65 -2.16 -14.49 16 27 C 0.32 4.19 12.96 180.04 2.33 6.53 16 28 N -0.57 -9.54 6.22 -195.70 -1.22 -10.76 16 29 H 0.45 4.40 8.96 -92.71 -0.83 3.57 16 30 C 0.21 5.99 8.46 134.06 1.13 7.13 16 31 N -0.44 -14.68 4.72 -181.84 -0.86 -15.54 16 32 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.03 1.40 5.46 -2.47 -0.01 1.39 16 34 H 0.04 1.99 6.01 -2.19 -0.01 1.98 16 35 H 0.04 1.92 8.15 -2.24 -0.02 1.90 16 36 H 0.06 3.29 6.07 -2.30 -0.01 3.28 16 37 H 0.09 1.95 8.17 -2.21 -0.02 1.93 16 38 H 0.09 2.31 7.68 -2.24 -0.02 2.29 16 39 H 0.08 2.07 6.44 -2.36 -0.02 2.06 16 40 H 0.10 1.89 8.17 -2.23 -0.02 1.87 16 41 H 0.05 2.06 5.86 -2.31 -0.01 2.05 16 42 H 0.04 1.50 7.91 -2.31 -0.02 1.48 16 43 H 0.15 5.07 7.61 -2.91 -0.02 5.05 16 44 H 0.17 3.81 8.06 -2.91 -0.02 3.78 16 45 H 0.28 -0.09 8.06 -2.91 -0.02 -0.11 16 Total: -1.00 -82.28 346.24 2.53 -79.75 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.24 Total: 13.55 kcal Atomic # 6 Polarization: 30.64 SS G_CDS: 8.03 Total: 38.67 kcal Atomic # 7 Polarization: -143.19 SS G_CDS: -7.70 Total: -150.89 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.06 Total: -30.30 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -82.28 2.53 -79.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039392058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.618 kcal (2) G-P(sol) polarization free energy of solvation -82.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds