Wall clock time and date at job start Sat Apr 11 2020 06:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99368 * 2 1 4 4 H 1.48502 * 109.46890 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46831 * 299.99207 * 3 2 1 6 6 H 1.48496 * 109.47451 * 59.99733 * 3 2 1 7 7 C 1.38805 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99743 * 187.76542 * 7 2 1 9 9 N 1.36936 * 120.00440 * 7.77204 * 7 2 1 10 10 C 1.44769 * 120.03330 * 210.64874 * 9 7 2 11 11 C 1.51433 * 112.64409 * 264.14492 * 10 9 7 12 12 C 1.51752 * 112.77259 * 286.01279 * 11 10 9 13 13 H 1.08999 * 112.09279 * 187.27526 * 12 11 10 14 14 C 1.55217 * 103.55103 * 308.34363 * 12 11 10 15 15 C 1.53957 * 105.23470 * 98.14146 * 14 12 11 16 16 C 1.49968 * 105.25271 * 359.69897 * 15 14 12 17 17 H 1.08996 * 104.92581 * 129.84487 * 16 15 14 18 18 C 1.50419 * 120.02735 * 30.62010 * 9 7 2 19 19 N 1.48049 * 108.64745 * 62.38104 * 12 11 10 20 20 C 1.34778 * 127.77864 * 95.67068 * 19 12 11 21 21 O 1.21622 * 120.00410 * 332.05810 * 20 19 12 22 22 C 1.47210 * 119.99461 * 152.06671 * 20 19 12 23 23 C 1.37757 * 119.93373 * 216.28707 * 22 20 19 24 24 C 1.39859 * 119.92864 * 179.73476 * 23 22 20 25 25 C 1.36309 * 119.81745 * 0.55513 * 24 23 22 26 26 C 1.40766 * 119.70859 * 359.71355 * 25 24 23 27 27 N 1.32819 * 132.73941 * 180.02562 * 26 25 24 28 28 C 1.32378 * 109.74047 * 179.97438 * 27 26 25 29 29 N 1.31387 * 109.61981 * 359.97438 * 28 27 26 30 30 N 1.36555 * 119.87754 * 0.02562 * 26 25 24 31 31 H 0.96997 * 120.00300 * 0.02562 * 1 2 3 32 32 H 1.08991 * 108.85128 * 143.32298 * 10 9 7 33 33 H 1.08998 * 108.76231 * 24.89657 * 10 9 7 34 34 H 1.08997 * 108.82240 * 165.16728 * 11 10 9 35 35 H 1.08999 * 108.73934 * 46.80269 * 11 10 9 36 36 H 1.08995 * 110.29088 * 217.07957 * 14 12 11 37 37 H 1.09004 * 110.28835 * 339.20413 * 14 12 11 38 38 H 1.08997 * 110.28359 * 118.64597 * 15 14 12 39 39 H 1.09002 * 110.28386 * 240.75810 * 15 14 12 40 40 H 1.08998 * 109.52185 * 270.53193 * 18 9 7 41 41 H 1.08999 * 109.51976 * 30.65432 * 18 9 7 42 42 H 1.07999 * 120.03717 * 0.02562 * 23 22 20 43 43 H 1.08005 * 120.09161 * 180.27099 * 24 23 22 44 44 H 1.07997 * 120.13948 * 179.69173 * 25 24 23 45 45 H 1.08000 * 125.18587 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0829 -1.2062 0.1269 9 7 1.3352 -2.3827 -0.1593 10 6 1.8326 -3.5918 0.4623 11 6 2.6746 -4.4274 -0.4790 12 6 1.8451 -5.1503 -1.5241 13 1 2.4433 -5.8450 -2.1136 14 6 0.7593 -5.8781 -0.6870 15 6 -0.4835 -4.9725 -0.7616 16 6 -0.0688 -3.8018 -1.6023 17 1 -0.8513 -3.7054 -2.3548 18 6 0.0756 -2.4243 -0.9804 19 7 1.1581 -4.1425 -2.3633 20 6 1.5574 -3.6467 -3.5513 21 8 2.7418 -3.5988 -3.8232 22 6 0.5597 -3.1629 -4.5196 23 6 0.7605 -3.3571 -5.8686 24 6 -0.1901 -2.9024 -6.7881 25 6 -1.3070 -2.2583 -6.3458 26 6 -1.4979 -2.0610 -4.9652 27 7 -2.4652 -1.4823 -4.2626 28 6 -2.1826 -1.5519 -2.9712 29 7 -1.0365 -2.1717 -2.8031 30 7 -0.5645 -2.5147 -4.0778 31 1 -0.4850 0.8400 -0.0004 32 1 0.9854 -4.1881 0.8005 33 1 2.4375 -3.3182 1.3268 34 1 3.2265 -5.1649 0.1037 35 1 3.3865 -3.7751 -0.9846 36 1 0.5414 -6.8551 -1.1182 37 1 1.0877 -5.9849 0.3469 38 1 -1.3100 -5.5032 -1.2341 39 1 -0.7686 -4.6390 0.2362 40 1 -0.7832 -2.2216 -0.3406 41 1 0.1289 -1.6721 -1.7675 42 1 1.6488 -3.8641 -6.2154 43 1 -0.0374 -3.0571 -7.8461 44 1 -2.0420 -1.9006 -7.0517 45 1 -2.8006 -1.1597 -2.1769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039401436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:33 Heat of formation + Delta-G solvation = 213.551150 kcal Electronic energy + Delta-G solvation = -32545.660249 eV Core-core repulsion = 28570.300928 eV Total energy + Delta-G solvation = -3975.359321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.63987 -40.23762 -38.52656 -37.04238 -34.49656 -34.08458 -32.36995 -31.46555 -31.00869 -30.60007 -29.85202 -26.90441 -25.72330 -24.90545 -23.86455 -23.29461 -22.78805 -21.31198 -20.99685 -19.12348 -18.79154 -18.05816 -17.48774 -16.55118 -16.51407 -16.05096 -15.59843 -15.39500 -15.31491 -14.79893 -14.19451 -14.05833 -13.70698 -13.51611 -13.23171 -12.96221 -12.71084 -12.64237 -12.48533 -12.19127 -12.03167 -11.64488 -11.61610 -11.27060 -11.20538 -11.06386 -10.82672 -10.71179 -10.54996 -10.47307 -10.24692 -10.02416 -9.85269 -9.79730 -9.39664 -8.98192 -8.80467 -8.48219 -8.09694 -7.68918 -6.50658 -5.70111 -3.15144 0.37886 1.06477 2.11105 2.56373 3.08790 3.14458 3.39262 3.47075 3.49596 3.51142 4.08774 4.32997 4.54387 4.64107 4.80727 4.91393 4.94699 5.02585 5.15040 5.28367 5.37371 5.48791 5.53650 5.63836 5.68003 5.75984 5.82495 5.92199 6.01433 6.06145 6.11742 6.18719 6.29763 6.42209 6.47687 6.48020 6.62588 6.69327 6.74673 6.83594 6.85445 6.88147 7.14009 7.57063 7.75652 7.90461 7.99537 8.16843 8.26413 8.54847 9.29626 9.94836 10.49823 11.37166 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.006648 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.797206 B = 4210.602213 C = 5431.611681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.007 3.993 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.243 4.243 8 H 0.058 0.942 9 N -0.593 5.593 10 C 0.152 3.848 11 C -0.160 4.160 12 C 0.143 3.857 13 H 0.083 0.917 14 C -0.127 4.127 15 C -0.116 4.116 16 C 0.096 3.904 17 H 0.090 0.910 18 C 0.196 3.804 19 N -0.592 5.592 20 C 0.592 3.408 21 O -0.518 6.518 22 C 0.114 3.886 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.090 4.090 26 C 0.265 3.735 27 N -0.539 5.539 28 C 0.207 3.793 29 N -0.262 5.262 30 N -0.290 5.290 31 H 0.249 0.751 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.163 0.837 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -11.777 -9.952 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.374 4.374 8 H 0.076 0.924 9 N -0.317 5.317 10 C 0.024 3.976 11 C -0.202 4.202 12 C 0.040 3.960 13 H 0.101 0.899 14 C -0.165 4.165 15 C -0.155 4.155 16 C -0.007 4.007 17 H 0.106 0.894 18 C 0.072 3.928 19 N -0.325 5.325 20 C 0.378 3.622 21 O -0.394 6.394 22 C 0.001 3.999 23 C -0.135 4.135 24 C -0.098 4.098 25 C -0.112 4.112 26 C 0.011 3.989 27 N -0.269 5.269 28 C -0.090 4.090 29 N -0.091 5.091 30 N -0.067 5.067 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.123 0.877 42 H 0.181 0.819 43 H 0.170 0.830 44 H 0.173 0.827 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.902 -11.433 -9.460 15.344 hybrid contribution 0.588 1.132 -0.055 1.277 sum -3.314 -10.301 -9.515 14.410 Atomic orbital electron populations 1.69945 1.04927 1.24782 1.55237 1.25065 0.95422 0.97822 1.00838 0.86303 0.79453 0.84450 0.77121 1.20426 1.21934 1.21630 1.19139 0.90298 0.84101 1.43835 0.92381 1.44536 1.27600 1.03539 1.56017 1.20160 0.95597 0.88736 0.93131 1.22308 0.99975 0.99601 0.98289 1.21741 0.94117 0.89313 0.90829 0.89873 1.22786 0.95182 0.97816 1.00714 1.21580 0.97066 0.95548 1.01276 1.22695 0.85873 0.96413 0.95721 0.89371 1.22124 0.88436 0.89560 0.92708 1.48607 1.25469 1.41317 1.17080 1.16825 0.86699 0.78225 0.80407 1.90822 1.15971 1.54255 1.78319 1.20708 0.86777 0.97665 0.94743 1.21226 1.01291 1.02282 0.88703 1.21095 0.92308 0.95686 1.00735 1.20394 0.99649 1.00744 0.90394 1.21903 0.86941 0.96681 0.93375 1.70775 1.26324 1.26223 1.03550 1.26636 0.93504 0.95273 0.93561 1.80951 1.13975 1.23446 0.90745 1.48777 1.14691 1.35610 1.07656 0.94036 0.94668 0.93756 0.92677 0.91890 0.92074 0.89701 0.91941 0.89860 0.93519 0.87731 0.81946 0.82951 0.82719 0.76200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 10.97 55.49 0.61 -25.00 16 2 C 0.01 0.19 5.19 -17.43 -0.09 0.10 16 3 Si 0.90 22.73 29.56 -169.99 -5.02 17.70 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.87 9.54 -15.06 -0.14 -7.02 16 8 H 0.06 1.68 7.84 -52.49 -0.41 1.27 16 9 N -0.59 -14.83 2.90 -172.96 -0.50 -15.33 16 10 C 0.15 3.17 5.25 -5.76 -0.03 3.14 16 11 C -0.16 -2.97 4.95 -28.16 -0.14 -3.11 16 12 C 0.14 2.38 4.09 -66.54 -0.27 2.11 16 13 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 14 C -0.13 -1.73 5.93 -25.06 -0.15 -1.88 16 15 C -0.12 -1.77 5.81 -27.74 -0.16 -1.94 16 16 C 0.10 1.80 1.78 -69.01 -0.12 1.67 16 17 H 0.09 1.67 4.23 -148.99 -0.63 1.04 16 18 C 0.20 4.52 3.05 -2.44 -0.01 4.51 16 19 N -0.59 -11.24 2.56 -159.11 -0.41 -11.64 16 20 C 0.59 11.69 7.41 -12.62 -0.09 11.60 16 21 O -0.52 -11.34 17.41 5.26 0.09 -11.25 16 22 C 0.11 1.93 6.57 -82.05 -0.54 1.39 16 23 C -0.11 -1.38 9.59 -39.15 -0.38 -1.76 16 24 C -0.07 -0.69 10.04 -39.67 -0.40 -1.09 16 25 C -0.09 -1.03 10.09 -39.32 -0.40 -1.43 16 26 C 0.26 4.26 7.88 -156.37 -1.23 3.02 16 27 N -0.54 -9.31 11.24 -13.99 -0.16 -9.47 16 28 C 0.21 3.67 12.98 -92.00 -1.19 2.47 16 29 N -0.26 -5.10 3.10 29.25 0.09 -5.01 16 30 N -0.29 -5.19 3.38 -8.82 -0.03 -5.22 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.04 0.67 4.23 -51.93 -0.22 0.45 16 33 H 0.04 0.95 7.95 -51.93 -0.41 0.54 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.09 6.56 -51.93 -0.34 0.75 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.31 7.11 -51.93 -0.37 0.94 16 40 H 0.05 1.17 7.52 -51.93 -0.39 0.78 16 41 H 0.11 2.73 4.74 -134.06 -0.63 2.10 16 42 H 0.16 1.70 7.98 -52.49 -0.42 1.28 16 43 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 44 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 45 H 0.22 3.39 8.06 -52.49 -0.42 2.96 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -34.14 343.92 -11.84 -45.98 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.35 Total: 2.24 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: -5.34 Total: 11.81 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -0.40 Total: -71.67 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.14 -11.84 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039401436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 259.530 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 225.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 213.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds