Wall clock time and date at job start Sat Apr 11 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48503 * 109.46722 * 274.98104 * 3 2 1 5 5 H 1.48493 * 109.47371 * 34.97979 * 3 2 1 6 6 H 1.48500 * 109.47257 * 154.98597 * 3 2 1 7 7 C 1.38813 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00146 * 187.13709 * 7 2 1 9 9 N 1.36939 * 119.99874 * 7.14011 * 7 2 1 10 10 C 1.47146 * 125.60549 * 354.73685 * 9 7 2 11 11 C 1.54584 * 107.32565 * 179.10524 * 10 9 7 12 12 C 1.53701 * 102.95046 * 339.02824 * 11 10 9 13 13 C 1.52885 * 111.75467 * 154.44127 * 12 11 10 14 14 C 1.54750 * 104.41083 * 121.73608 * 13 12 11 15 15 N 1.48278 * 104.66507 * 23.67639 * 14 13 12 16 16 C 1.34779 * 127.71561 * 141.25386 * 15 14 13 17 17 O 1.21575 * 119.99682 * 176.21904 * 16 15 14 18 18 C 1.47683 * 120.00364 * 356.21797 * 16 15 14 19 19 C 1.39985 * 120.38192 * 24.95508 * 18 16 15 20 20 N 1.31385 * 121.15894 * 179.97438 * 19 18 16 21 21 C 1.32539 * 121.79578 * 359.97438 * 20 19 18 22 22 N 1.37583 * 133.57162 * 179.97438 * 21 20 19 23 23 H 0.97008 * 126.23362 * 0.03961 * 22 21 20 24 24 C 1.36162 * 107.52574 * 180.02562 * 22 21 20 25 25 N 1.30055 * 110.11629 * 0.02562 * 24 22 21 26 26 C 1.35777 * 109.43188 * 359.97438 * 25 24 22 27 27 C 1.39490 * 133.74260 * 180.28494 * 26 25 24 28 28 C 1.48479 * 104.56491 * 321.27939 * 15 14 13 29 29 C 1.47707 * 125.61052 * 174.78226 * 9 7 2 30 30 H 0.96996 * 119.99725 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.86831 * 59.66930 * 10 9 7 32 32 H 1.08992 * 109.99179 * 298.60354 * 10 9 7 33 33 H 1.08993 * 110.75164 * 97.44485 * 11 10 9 34 34 H 1.09004 * 110.74328 * 220.61784 * 11 10 9 35 35 H 1.08994 * 110.44653 * 240.47502 * 13 12 11 36 36 H 1.09000 * 110.44278 * 2.88436 * 13 12 11 37 37 H 1.08998 * 110.40298 * 142.47322 * 14 13 12 38 38 H 1.09005 * 110.39974 * 264.76916 * 14 13 12 39 39 H 1.08001 * 119.42111 * 359.95723 * 19 18 16 40 40 H 1.08005 * 124.94112 * 179.97438 * 24 22 21 41 41 H 1.08000 * 120.97498 * 359.94283 * 27 26 25 42 42 H 1.08995 * 110.47131 * 279.53892 * 28 15 14 43 43 H 1.09001 * 110.47447 * 156.92914 * 28 15 14 44 44 H 1.09006 * 110.38707 * 321.36662 * 29 9 7 45 45 H 1.08999 * 110.38979 * 83.74710 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0840 -1.2057 0.1167 9 7 1.3336 -2.3835 -0.1463 10 6 -0.1293 -2.5315 -0.2036 11 6 -0.4328 -4.0347 -0.3980 12 6 0.8848 -4.5808 -0.9709 13 6 1.0598 -6.0695 -0.6698 14 6 1.2012 -6.7300 -2.0620 15 7 1.6822 -5.6417 -2.9468 16 6 2.5888 -5.7268 -3.9405 17 8 2.8311 -4.7533 -4.6272 18 6 3.2878 -7.0026 -4.1950 19 6 2.7035 -8.2175 -3.8183 20 7 3.3116 -9.3613 -4.0378 21 6 4.4993 -9.4197 -4.6231 22 7 5.3383 -10.4552 -4.9646 23 1 5.1739 -11.3995 -4.8153 24 6 6.4413 -9.9131 -5.5507 25 7 6.3353 -8.6175 -5.5908 26 6 5.1554 -8.2433 -5.0329 27 6 4.5368 -7.0113 -4.8201 28 6 0.9422 -4.4370 -2.4930 29 6 1.9519 -3.7190 -0.2724 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5266 -1.9616 -1.0435 32 1 -0.5760 -2.1805 0.7265 33 1 -0.6647 -4.5083 0.5559 34 1 -1.2495 -4.1753 -1.1061 35 1 1.9591 -6.2348 -0.0766 36 1 0.1845 -6.4580 -0.1491 37 1 1.9295 -7.5402 -2.0260 38 1 0.2362 -7.1027 -2.4056 39 1 1.7359 -8.2146 -3.3384 40 1 7.2823 -10.4769 -5.9267 41 1 5.0117 -6.0907 -5.1260 42 1 -0.0634 -4.4267 -2.9131 43 1 1.4816 -3.5313 -2.7702 44 1 2.8538 -3.6639 -0.8822 45 1 2.1827 -4.1251 0.7125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041330021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:38 Heat of formation + Delta-G solvation = 107.530941 kcal Electronic energy + Delta-G solvation = -29421.470983 eV Core-core repulsion = 25441.514281 eV Total energy + Delta-G solvation = -3979.956702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.74797 -40.45408 -38.86760 -37.80725 -35.74534 -34.03985 -32.77580 -31.66714 -30.71477 -30.24137 -29.12200 -28.05448 -26.10864 -24.76066 -24.42726 -23.42794 -22.37210 -22.05932 -20.24129 -19.84990 -19.05295 -18.83871 -18.24437 -16.85786 -16.56756 -16.38099 -16.06943 -15.68470 -15.21632 -14.74373 -14.54488 -14.50279 -14.02064 -13.85393 -13.62316 -13.47038 -13.40285 -12.93287 -12.80800 -12.35862 -11.90564 -11.85341 -11.55592 -11.54939 -11.39398 -11.24606 -11.23009 -10.84336 -10.75974 -10.17330 -10.14129 -9.93879 -9.91258 -9.79383 -9.60544 -9.50383 -9.25184 -8.96734 -8.62912 -8.52048 -6.78422 -5.68263 -2.99902 0.38964 0.52478 2.09286 2.33151 2.73725 2.88912 3.44990 3.50879 3.51721 3.53998 3.68906 3.98138 4.26079 4.37351 4.50381 4.54055 4.66122 4.68764 4.81973 4.95663 5.07184 5.23422 5.34027 5.34900 5.49738 5.54514 5.64959 5.72384 5.78768 5.82823 5.92350 6.01560 6.04019 6.11219 6.23494 6.36101 6.38344 6.53513 6.58858 6.61537 6.77160 6.84789 7.23093 7.39044 7.58080 7.59289 7.65668 7.86624 8.15950 8.29776 9.26531 9.86667 10.52589 11.43919 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002615 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.780040 B =10705.013795 C =11635.255443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.176 3.824 11 C -0.131 4.131 12 C -0.087 4.087 13 C -0.119 4.119 14 C 0.080 3.920 15 N -0.615 5.615 16 C 0.585 3.415 17 O -0.528 6.528 18 C -0.188 4.188 19 C 0.157 3.843 20 N -0.485 5.485 21 C 0.253 3.747 22 N -0.589 5.589 23 H 0.430 0.570 24 C 0.275 3.725 25 N -0.479 5.479 26 C -0.007 4.007 27 C 0.045 3.955 28 C 0.130 3.870 29 C 0.151 3.849 30 H 0.251 0.749 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.186 0.814 40 H 0.227 0.773 41 H 0.155 0.845 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.038 0.962 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -25.786 -7.712 27.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.051 3.949 11 C -0.169 4.169 12 C -0.089 4.089 13 C -0.157 4.157 14 C -0.042 4.042 15 N -0.349 5.349 16 C 0.373 3.627 17 O -0.405 6.405 18 C -0.196 4.196 19 C -0.011 4.011 20 N -0.198 5.198 21 C 0.016 3.984 22 N -0.204 5.204 23 H 0.270 0.730 24 C -0.013 4.013 25 N -0.198 5.198 26 C -0.126 4.126 27 C 0.018 3.982 28 C 0.009 3.991 29 C 0.025 3.975 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.203 0.797 40 H 0.244 0.756 41 H 0.173 0.827 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.056 0.944 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.862 -25.193 -8.272 27.156 hybrid contribution 0.230 0.481 0.223 0.577 sum 6.092 -24.712 -8.049 26.694 Atomic orbital electron populations 1.69970 1.04873 1.24971 1.56995 1.24790 0.95686 0.97588 1.02217 0.86146 0.78692 0.83701 0.77550 1.21576 1.21840 1.20679 1.19044 0.91110 0.82581 1.42760 0.90549 1.44564 1.01595 1.00865 1.86098 1.21231 0.84432 0.88352 1.00871 1.22819 0.94697 0.99908 0.99521 1.21720 0.98818 0.93948 0.94376 1.22406 1.02966 0.94856 0.95513 1.23019 0.99582 0.90906 0.90718 1.48984 1.40689 1.12349 1.32833 1.17344 0.78572 0.87094 0.79666 1.90843 1.64446 1.37983 1.47255 1.20637 0.97428 0.95192 1.06307 1.23539 0.99298 0.85109 0.93198 1.66485 1.07212 1.30197 1.15875 1.19178 0.91754 0.88102 0.99319 1.42876 1.16770 1.09383 1.51362 0.72997 1.25551 0.90583 0.90059 0.95143 1.70513 1.17703 1.10720 1.20871 1.19538 0.94241 0.93876 1.04970 1.20850 0.91291 0.96575 0.89511 1.22232 0.95985 0.88239 0.92631 1.21485 0.93775 0.86329 0.95931 0.93818 0.93415 0.94132 0.91980 0.91905 0.90665 0.89947 0.89496 0.90264 0.79720 0.75646 0.82688 0.90976 0.88739 0.94366 0.96271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.16 10.35 55.49 0.57 -26.59 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.62 29.56 -169.99 -5.02 17.59 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.40 10.27 -15.06 -0.15 -6.56 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.60 -15.32 3.41 -170.19 -0.58 -15.90 16 10 C 0.18 4.14 5.34 -2.86 -0.02 4.12 16 11 C -0.13 -2.23 5.81 -25.53 -0.15 -2.38 16 12 C -0.09 -1.39 0.82 -153.72 -0.13 -1.51 16 13 C -0.12 -1.37 6.33 -25.87 -0.16 -1.53 16 14 C 0.08 0.80 5.30 -2.14 -0.01 0.79 16 15 N -0.62 -8.67 3.33 -170.72 -0.57 -9.23 16 16 C 0.59 9.12 7.73 -12.40 -0.10 9.03 16 17 O -0.53 -10.39 16.96 5.30 0.09 -10.30 16 18 C -0.19 -2.41 5.79 -104.85 -0.61 -3.01 16 19 C 0.16 1.66 9.16 -17.09 -0.16 1.50 16 20 N -0.49 -5.31 10.36 -11.96 -0.12 -5.43 16 21 C 0.25 2.69 8.45 -155.64 -1.31 1.37 16 22 N -0.59 -3.74 6.20 -13.22 -0.08 -3.82 16 23 H 0.43 1.22 8.96 -40.82 -0.37 0.85 16 24 C 0.27 1.67 12.97 -89.71 -1.16 0.50 16 25 N -0.48 -5.21 11.29 -12.02 -0.14 -5.34 16 26 C -0.01 -0.08 7.23 -84.69 -0.61 -0.70 16 27 C 0.05 0.59 9.75 -38.58 -0.38 0.22 16 28 C 0.13 2.15 6.10 -2.96 -0.02 2.13 16 29 C 0.15 3.08 5.97 -2.89 -0.02 3.06 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.05 1.25 7.30 -51.93 -0.38 0.88 16 32 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 33 H 0.06 0.97 7.89 -51.93 -0.41 0.56 16 34 H 0.06 0.95 7.67 -51.93 -0.40 0.55 16 35 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 36 H 0.08 0.80 7.63 -51.93 -0.40 0.40 16 37 H 0.09 0.73 5.02 -51.93 -0.26 0.47 16 38 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 39 H 0.19 1.50 4.67 -52.49 -0.25 1.26 16 40 H 0.23 0.13 8.06 -52.48 -0.42 -0.30 16 41 H 0.16 2.05 7.90 -52.49 -0.41 1.64 16 42 H 0.07 1.11 7.62 -51.93 -0.40 0.71 16 43 H 0.09 1.95 7.64 -51.93 -0.40 1.55 16 44 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 45 H 0.02 0.39 7.93 -51.93 -0.41 -0.02 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -36.94 361.06 -11.16 -48.09 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.67 Total: -1.27 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: -5.08 Total: 6.76 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.92 Total: -66.32 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.94 -11.16 -48.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041330021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.623 kcal (2) G-P(sol) polarization free energy of solvation -36.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds