Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48503 * 109.46722 * 274.98104 * 3 2 1 5 5 H 1.48493 * 109.47371 * 34.97979 * 3 2 1 6 6 H 1.48500 * 109.47257 * 154.98597 * 3 2 1 7 7 C 1.38813 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00146 * 187.13709 * 7 2 1 9 9 N 1.36939 * 119.99874 * 7.14011 * 7 2 1 10 10 C 1.47146 * 125.60549 * 354.73685 * 9 7 2 11 11 C 1.54584 * 107.32565 * 179.10524 * 10 9 7 12 12 C 1.53701 * 102.95046 * 339.02824 * 11 10 9 13 13 C 1.52885 * 111.75467 * 154.44127 * 12 11 10 14 14 C 1.54750 * 104.41083 * 121.73608 * 13 12 11 15 15 N 1.48278 * 104.66507 * 23.67639 * 14 13 12 16 16 C 1.34779 * 127.71561 * 141.25386 * 15 14 13 17 17 O 1.21575 * 119.99682 * 176.21904 * 16 15 14 18 18 C 1.47683 * 120.00364 * 356.21797 * 16 15 14 19 19 C 1.39985 * 120.38192 * 24.95508 * 18 16 15 20 20 N 1.31385 * 121.15894 * 179.97438 * 19 18 16 21 21 C 1.32539 * 121.79578 * 359.97438 * 20 19 18 22 22 N 1.37583 * 133.57162 * 179.97438 * 21 20 19 23 23 H 0.97008 * 126.23362 * 0.03961 * 22 21 20 24 24 C 1.36162 * 107.52574 * 180.02562 * 22 21 20 25 25 N 1.30055 * 110.11629 * 0.02562 * 24 22 21 26 26 C 1.35777 * 109.43188 * 359.97438 * 25 24 22 27 27 C 1.39490 * 133.74260 * 180.28494 * 26 25 24 28 28 C 1.48479 * 104.56491 * 321.27939 * 15 14 13 29 29 C 1.47707 * 125.61052 * 174.78226 * 9 7 2 30 30 H 0.96996 * 119.99725 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.86831 * 59.66930 * 10 9 7 32 32 H 1.08992 * 109.99179 * 298.60354 * 10 9 7 33 33 H 1.08993 * 110.75164 * 97.44485 * 11 10 9 34 34 H 1.09004 * 110.74328 * 220.61784 * 11 10 9 35 35 H 1.08994 * 110.44653 * 240.47502 * 13 12 11 36 36 H 1.09000 * 110.44278 * 2.88436 * 13 12 11 37 37 H 1.08998 * 110.40298 * 142.47322 * 14 13 12 38 38 H 1.09005 * 110.39974 * 264.76916 * 14 13 12 39 39 H 1.08001 * 119.42111 * 359.95723 * 19 18 16 40 40 H 1.08005 * 124.94112 * 179.97438 * 24 22 21 41 41 H 1.08000 * 120.97498 * 359.94283 * 27 26 25 42 42 H 1.08995 * 110.47131 * 279.53892 * 28 15 14 43 43 H 1.09001 * 110.47447 * 156.92914 * 28 15 14 44 44 H 1.09006 * 110.38707 * 321.36662 * 29 9 7 45 45 H 1.08999 * 110.38979 * 83.74710 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5043 2.6200 0.8026 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0840 -1.2057 0.1167 9 7 1.3336 -2.3835 -0.1463 10 6 -0.1293 -2.5315 -0.2036 11 6 -0.4328 -4.0347 -0.3980 12 6 0.8848 -4.5808 -0.9709 13 6 1.0598 -6.0695 -0.6698 14 6 1.2012 -6.7300 -2.0620 15 7 1.6822 -5.6417 -2.9468 16 6 2.5888 -5.7268 -3.9405 17 8 2.8311 -4.7533 -4.6272 18 6 3.2878 -7.0026 -4.1950 19 6 2.7035 -8.2175 -3.8183 20 7 3.3116 -9.3613 -4.0378 21 6 4.4993 -9.4197 -4.6231 22 7 5.3383 -10.4552 -4.9646 23 1 5.1739 -11.3995 -4.8153 24 6 6.4413 -9.9131 -5.5507 25 7 6.3353 -8.6175 -5.5908 26 6 5.1554 -8.2433 -5.0329 27 6 4.5368 -7.0113 -4.8201 28 6 0.9422 -4.4370 -2.4930 29 6 1.9519 -3.7190 -0.2724 30 1 -0.4849 0.8400 -0.0004 31 1 -0.5266 -1.9616 -1.0435 32 1 -0.5760 -2.1805 0.7265 33 1 -0.6647 -4.5083 0.5559 34 1 -1.2495 -4.1753 -1.1061 35 1 1.9591 -6.2348 -0.0766 36 1 0.1845 -6.4580 -0.1491 37 1 1.9295 -7.5402 -2.0260 38 1 0.2362 -7.1027 -2.4056 39 1 1.7359 -8.2146 -3.3384 40 1 7.2823 -10.4769 -5.9267 41 1 5.0117 -6.0907 -5.1260 42 1 -0.0634 -4.4267 -2.9131 43 1 1.4816 -3.5313 -2.7702 44 1 2.8538 -3.6639 -0.8822 45 1 2.1827 -4.1251 0.7125 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041330021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 81.588898 kcal Electronic energy + Delta-G solvation = -29422.595914 eV Core-core repulsion = 25441.514281 eV Total energy + Delta-G solvation = -3981.081633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.46098 -41.61357 -40.05610 -38.87315 -37.26389 -34.80360 -34.56296 -32.66716 -32.08973 -31.16696 -30.66967 -29.42001 -27.60977 -26.35373 -25.22492 -24.59533 -23.48045 -22.77643 -22.10808 -20.89193 -20.17937 -19.75706 -19.21453 -18.73129 -17.51497 -17.38110 -16.93683 -16.76188 -16.64263 -16.32644 -15.96412 -15.52478 -15.21832 -15.02627 -14.94993 -14.69306 -14.44024 -14.23759 -13.83112 -13.74196 -13.62781 -13.16838 -12.95254 -12.89637 -12.68656 -12.56502 -12.51837 -12.32940 -12.11835 -12.02012 -11.86669 -11.52344 -11.35758 -11.25114 -11.13474 -10.67717 -10.41693 -10.12462 -9.75581 -9.72468 -8.87407 -7.87633 -5.20192 -0.47347 -0.29530 1.41087 1.44409 1.47964 1.51971 1.60257 1.72647 1.83477 2.47267 2.63016 2.99268 3.28987 3.29500 3.40365 3.54436 3.61179 3.63100 3.66209 3.77224 3.88575 4.14023 4.22691 4.25767 4.34501 4.42909 4.63260 4.64556 4.66064 4.72137 4.78482 4.86890 4.87629 4.93325 4.94168 5.08851 5.13353 5.18453 5.29676 5.39273 5.42705 5.47001 5.73658 5.82137 6.11236 6.21019 6.46191 6.57433 6.68033 6.98128 7.11358 7.78416 8.42067 9.22708 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.002615 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.780040 B =10705.013795 C =11635.255443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.062 4.062 3 Si 0.970 3.030 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.627 5.627 10 C 0.180 3.820 11 C -0.111 4.111 12 C -0.074 4.074 13 C -0.110 4.110 14 C 0.079 3.921 15 N -0.612 5.612 16 C 0.581 3.419 17 O -0.587 6.587 18 C -0.194 4.194 19 C 0.163 3.837 20 N -0.481 5.481 21 C 0.246 3.754 22 N -0.572 5.572 23 H 0.450 0.550 24 C 0.308 3.692 25 N -0.531 5.531 26 C -0.024 4.024 27 C 0.023 3.977 28 C 0.132 3.868 29 C 0.147 3.853 30 H 0.247 0.753 31 H 0.007 0.993 32 H 0.005 0.995 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.216 0.784 40 H 0.284 0.716 41 H 0.134 0.866 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.016 0.984 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.519 -30.670 -7.381 32.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.354 5.354 10 C 0.055 3.945 11 C -0.150 4.150 12 C -0.076 4.076 13 C -0.148 4.148 14 C -0.042 4.042 15 N -0.344 5.344 16 C 0.371 3.629 17 O -0.468 6.468 18 C -0.202 4.202 19 C -0.005 4.005 20 N -0.194 5.194 21 C 0.008 3.992 22 N -0.188 5.188 23 H 0.294 0.706 24 C 0.020 3.980 25 N -0.251 5.251 26 C -0.143 4.143 27 C -0.005 4.005 28 C 0.010 3.990 29 C 0.022 3.978 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.023 0.977 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.137 0.863 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.231 0.769 40 H 0.299 0.701 41 H 0.152 0.848 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.035 0.965 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.948 -30.176 -7.906 31.757 hybrid contribution 0.354 1.924 0.075 1.958 sum 6.302 -28.252 -7.830 29.987 Atomic orbital electron populations 1.70176 1.06021 1.25181 1.58035 1.25571 0.96624 1.00667 1.02669 0.85177 0.77984 0.79770 0.77172 1.21868 1.21540 1.19485 1.19361 0.91329 0.84356 1.42177 0.91008 1.44869 1.02779 1.01887 1.85842 1.21041 0.83219 0.92821 0.97384 1.22700 0.95896 0.94608 1.01769 1.21591 0.96195 0.96592 0.93183 1.22435 1.04900 0.90661 0.96799 1.23409 1.02105 0.89849 0.88805 1.49024 1.39857 1.12830 1.32703 1.17823 0.78362 0.87436 0.79287 1.90803 1.66259 1.40179 1.49585 1.20386 0.97380 0.94664 1.07745 1.23855 0.99948 0.83895 0.92768 1.66613 1.07184 1.29791 1.15793 1.19435 0.91887 0.88871 0.99020 1.42949 1.15827 1.09742 1.50297 0.70632 1.26711 0.90751 0.88934 0.91554 1.70514 1.17897 1.13422 1.23289 1.19640 0.95223 0.93959 1.05492 1.20809 0.92121 0.96768 0.90768 1.22036 0.96161 0.87378 0.93427 1.21671 0.94416 0.85206 0.96530 0.94367 0.97428 0.97674 0.89278 0.89163 0.90331 0.86281 0.87203 0.86260 0.76856 0.70112 0.84764 0.89348 0.94282 0.96520 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.45 10.35 21.65 0.22 -58.23 16 2 C -0.06 -3.69 5.48 84.86 0.46 -3.23 16 3 Si 0.97 48.25 29.56 68.60 2.03 50.27 16 4 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.24 -14.39 10.27 84.03 0.86 -13.52 16 8 H 0.07 4.18 7.84 -2.91 -0.02 4.15 16 9 N -0.63 -33.19 3.41 -692.37 -2.36 -35.55 16 10 C 0.18 8.80 5.34 86.80 0.46 9.26 16 11 C -0.11 -3.58 5.81 31.37 0.18 -3.40 16 12 C -0.07 -2.26 0.82 -51.67 -0.04 -2.30 16 13 C -0.11 -2.05 6.33 31.15 0.20 -1.85 16 14 C 0.08 1.23 5.30 86.63 0.46 1.69 16 15 N -0.61 -16.76 3.33 -812.31 -2.71 -19.46 16 16 C 0.58 18.77 7.73 86.74 0.67 19.44 16 17 O -0.59 -25.09 16.96 -3.95 -0.07 -25.16 16 18 C -0.19 -4.99 5.79 -20.01 -0.12 -5.11 16 19 C 0.16 3.06 9.16 85.18 0.78 3.84 16 20 N -0.48 -9.13 10.36 -191.76 -1.99 -11.12 16 21 C 0.25 4.65 8.45 133.91 1.13 5.78 16 22 N -0.57 -5.13 6.20 -195.74 -1.21 -6.34 16 23 H 0.45 0.51 8.96 -92.70 -0.83 -0.32 16 24 C 0.31 2.61 12.97 180.03 2.33 4.94 16 25 N -0.53 -10.86 11.29 -191.94 -2.17 -13.03 16 26 C -0.02 -0.58 7.23 39.46 0.29 -0.29 16 27 C 0.02 0.64 9.75 22.92 0.22 0.86 16 28 C 0.13 4.40 6.10 85.99 0.52 4.92 16 29 C 0.15 6.11 5.97 86.46 0.52 6.62 16 30 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.01 0.42 7.30 -2.39 -0.02 0.40 16 32 H 0.01 0.28 7.60 -2.39 -0.02 0.26 16 33 H 0.09 2.45 7.89 -2.39 -0.02 2.43 16 34 H 0.09 2.46 7.67 -2.39 -0.02 2.44 16 35 H 0.08 1.49 7.68 -2.39 -0.02 1.47 16 36 H 0.12 1.50 7.63 -2.39 -0.02 1.48 16 37 H 0.11 1.30 5.02 -2.39 -0.01 1.29 16 38 H 0.12 1.07 8.08 -2.38 -0.02 1.05 16 39 H 0.22 2.53 4.67 -2.91 -0.01 2.52 16 40 H 0.28 -1.28 8.06 -2.91 -0.02 -1.30 16 41 H 0.13 4.08 7.90 -2.91 -0.02 4.05 16 42 H 0.09 2.64 7.62 -2.39 -0.02 2.62 16 43 H 0.04 1.73 7.64 -2.39 -0.02 1.71 16 44 H 0.02 0.75 8.00 -2.38 -0.02 0.73 16 45 H 0.03 1.23 7.93 -2.39 -0.02 1.21 16 Total: -1.00 -90.96 361.06 0.91 -90.05 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 0.22 Total: 0.90 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 8.94 Total: 27.67 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -10.21 Total: -143.73 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.07 Total: -25.16 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -90.96 0.91 -90.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041330021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.636 kcal (2) G-P(sol) polarization free energy of solvation -90.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds