Wall clock time and date at job start Sat Apr 11 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86809 * 119.99756 * 2 1 4 4 H 1.48496 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46676 * 300.00034 * 3 2 1 6 6 H 1.48497 * 109.47070 * 59.99975 * 3 2 1 7 7 C 1.38813 * 120.00596 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99539 * 0.02562 * 7 2 1 10 10 C 1.47561 * 125.67756 * 0.03510 * 9 7 2 11 11 C 1.55184 * 105.00810 * 203.82812 * 10 9 7 12 12 C 1.53652 * 101.41687 * 324.51061 * 11 10 9 13 13 C 1.53659 * 111.41487 * 155.02672 * 12 11 10 14 14 C 1.55429 * 101.31323 * 87.05860 * 13 12 11 15 15 N 1.47559 * 104.88029 * 35.83113 * 14 13 12 16 16 C 1.34784 * 125.67599 * 156.03224 * 15 14 13 17 17 O 1.21538 * 119.99953 * 179.42050 * 16 15 14 18 18 C 1.47974 * 119.99758 * 359.68959 * 16 15 14 19 19 C 1.39731 * 119.42633 * 179.97438 * 18 16 15 20 20 C 1.36986 * 119.59813 * 179.97438 * 19 18 16 21 21 C 1.39892 * 118.35935 * 0.02562 * 20 19 18 22 22 N 1.35438 * 133.81120 * 180.02562 * 21 20 19 23 23 C 1.30210 * 109.57853 * 179.97438 * 22 21 20 24 24 N 1.35994 * 110.18253 * 359.97438 * 23 22 21 25 25 H 0.96994 * 126.29824 * 179.97438 * 24 23 22 26 26 C 1.37949 * 107.41108 * 359.97438 * 24 23 22 27 27 N 1.31886 * 133.82930 * 180.30225 * 26 24 23 28 28 C 1.47401 * 108.65096 * 335.76810 * 15 14 13 29 29 C 1.47405 * 125.67131 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.01006 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.33430 * 322.71665 * 10 9 7 32 32 H 1.09008 * 110.33102 * 84.84525 * 10 9 7 33 33 H 1.08996 * 111.03496 * 206.47490 * 11 10 9 34 34 H 1.08997 * 111.03011 * 82.54517 * 11 10 9 35 35 H 1.08997 * 111.03893 * 205.29391 * 13 12 11 36 36 H 1.09008 * 111.03126 * 329.18478 * 13 12 11 37 37 H 1.09004 * 110.49188 * 276.94115 * 14 13 12 38 38 H 1.09000 * 110.30428 * 154.62596 * 14 13 12 39 39 H 1.07995 * 120.19660 * 359.95918 * 19 18 16 40 40 H 1.08002 * 120.82018 * 179.97438 * 20 19 18 41 41 H 1.08005 * 124.91237 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.98574 * 121.71816 * 28 15 14 43 43 H 1.09000 * 109.98983 * 242.98488 * 28 15 14 44 44 H 1.09001 * 109.98934 * 58.57003 * 29 9 7 45 45 H 1.09010 * 109.98664 * 297.26401 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1428 -2.5340 -0.0007 11 6 -0.4075 -3.9379 0.6053 12 6 0.7836 -4.7367 0.0540 13 6 1.1149 -5.9403 0.9500 14 6 0.1669 -7.0250 0.3664 15 7 0.1374 -6.7612 -1.0851 16 6 -0.1576 -7.6633 -2.0421 17 8 -0.1615 -7.3301 -3.2109 18 6 -0.4826 -9.0580 -1.6692 19 6 -0.7871 -9.9832 -2.6711 20 6 -1.0879 -11.2754 -2.3299 21 6 -1.0793 -11.6242 -0.9752 22 7 -1.3203 -12.7742 -0.3015 23 6 -1.1776 -12.5693 0.9764 24 7 -0.8348 -11.2739 1.2086 25 1 -0.6716 -10.8696 2.0750 26 6 -0.7620 -10.6406 -0.0148 27 7 -0.4733 -9.4097 -0.3903 28 6 0.4778 -5.3455 -1.3139 29 6 1.9329 -3.7311 0.0005 30 1 -0.4851 0.8399 -0.0004 31 1 -0.6007 -1.7620 0.6176 32 1 -0.5278 -2.4807 -1.0192 33 1 -1.3523 -4.3468 0.2472 34 1 -0.3855 -3.9042 1.6945 35 1 2.1602 -6.2307 0.8444 36 1 0.8726 -5.7307 1.9919 37 1 -0.8326 -6.9260 0.7899 38 1 0.5652 -8.0205 0.5625 39 1 -0.7856 -9.6813 -3.7080 40 1 -1.3266 -12.0066 -3.0881 41 1 -1.3112 -13.3199 1.7415 42 1 1.3539 -5.2725 -1.9584 43 1 -0.3655 -4.8288 -1.7722 44 1 2.5731 -3.8506 0.8746 45 1 2.5140 -3.8773 -0.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041389325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:42 Heat of formation + Delta-G solvation = 80.076027 kcal Electronic energy + Delta-G solvation = -29337.769010 eV Core-core repulsion = 25356.621774 eV Total energy + Delta-G solvation = -3981.147236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.40772 -41.64981 -40.18947 -38.78724 -37.27018 -34.92771 -34.43409 -32.52316 -32.10619 -31.07873 -30.69092 -29.73820 -27.58264 -26.27453 -25.15181 -24.16833 -23.65444 -22.60433 -22.20384 -21.17607 -20.24254 -19.66728 -18.94510 -18.45765 -18.12236 -17.24914 -16.91518 -16.84656 -16.53838 -16.17181 -15.96900 -15.59026 -15.44811 -15.18206 -14.71986 -14.36061 -14.20740 -14.16572 -13.76334 -13.66901 -13.57937 -13.43332 -13.15735 -12.92397 -12.84520 -12.71500 -12.48744 -12.31369 -12.09299 -11.98420 -11.80553 -11.57822 -11.47641 -11.37160 -11.14278 -10.74544 -10.25818 -10.04102 -9.81807 -9.56769 -8.88308 -7.76949 -5.21043 -0.69318 0.09275 1.38144 1.43906 1.46459 1.47628 1.57843 1.82022 1.92968 2.49754 2.72763 2.95488 3.20151 3.31244 3.41435 3.54706 3.60641 3.63688 3.78766 3.81035 3.95343 4.20068 4.24491 4.31901 4.41044 4.57784 4.58999 4.64462 4.69691 4.75054 4.81747 4.90559 4.93677 4.98839 5.00404 5.04806 5.06605 5.22642 5.29608 5.34060 5.45773 5.47751 5.62843 5.82374 6.06528 6.30840 6.37679 6.55037 6.67753 6.93892 7.11121 7.78265 8.42721 9.25380 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028713 B = 0.002311 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.938908 B =12112.437299 C =12646.992856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.155 3.845 11 C -0.111 4.111 12 C -0.071 4.071 13 C -0.110 4.110 14 C 0.113 3.887 15 N -0.595 5.595 16 C 0.578 3.422 17 O -0.571 6.571 18 C 0.102 3.898 19 C -0.124 4.124 20 C -0.028 4.028 21 C 0.014 3.986 22 N -0.532 5.532 23 C 0.318 3.682 24 N -0.575 5.575 25 H 0.448 0.552 26 C 0.216 3.784 27 N -0.446 5.446 28 C 0.132 3.868 29 C 0.148 3.852 30 H 0.246 0.754 31 H 0.072 0.928 32 H -0.022 1.022 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.159 0.841 40 H 0.171 0.829 41 H 0.282 0.718 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 -29.605 6.924 30.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.364 4.364 8 H 0.100 0.900 9 N -0.352 5.352 10 C 0.030 3.970 11 C -0.149 4.149 12 C -0.072 4.072 13 C -0.148 4.148 14 C -0.008 4.008 15 N -0.326 5.326 16 C 0.366 3.634 17 O -0.450 6.450 18 C -0.044 4.044 19 C -0.148 4.148 20 C -0.055 4.055 21 C -0.108 4.108 22 N -0.252 5.252 23 C 0.031 3.969 24 N -0.191 5.191 25 H 0.291 0.709 26 C -0.024 4.024 27 N -0.162 5.162 28 C 0.009 3.991 29 C 0.023 3.977 30 H 0.056 0.944 31 H 0.090 0.910 32 H -0.004 1.004 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.176 0.824 40 H 0.189 0.811 41 H 0.297 0.703 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -2.735 -29.425 6.504 30.259 hybrid contribution 0.345 1.923 -0.388 1.992 sum -2.391 -27.502 6.116 28.275 Atomic orbital electron populations 1.70062 1.06239 1.24887 1.58844 1.25634 0.96632 1.01000 1.02919 0.84982 0.78131 0.79394 0.76664 1.19042 1.22294 1.21612 1.19498 0.91039 0.83741 1.42117 0.90048 1.44948 1.02617 1.00900 1.86754 1.21758 0.84096 0.95008 0.96101 1.22707 0.96449 0.95153 1.00591 1.21378 0.96391 0.95220 0.94217 1.22790 1.00339 0.91957 0.99714 1.22865 1.00230 1.00637 0.77074 1.48576 1.65800 1.09479 1.08772 1.17796 0.77305 0.84208 0.84101 1.90784 1.55079 1.80022 1.19144 1.20497 1.01921 0.93512 0.88521 1.21589 0.99338 0.92489 1.01361 1.20684 0.95404 0.95804 0.93630 1.20220 1.03488 0.91606 0.95451 1.70508 1.24794 1.25104 1.04828 1.26751 0.90746 0.84335 0.95068 1.42984 1.58370 1.10497 1.07259 0.70867 1.19235 1.03686 0.90939 0.88540 1.66433 1.14799 1.16792 1.18211 1.21694 0.99788 0.80361 0.97226 1.21274 0.94065 0.84119 0.98279 0.94413 0.90960 1.00400 0.90952 0.90151 0.89715 0.87609 0.90794 0.86812 0.82355 0.81116 0.70289 0.92321 0.93069 0.93825 0.96412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.61 10.09 21.65 0.22 -57.39 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.23 -13.32 10.28 84.03 0.86 -12.46 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -32.56 3.41 -693.03 -2.36 -34.93 16 10 C 0.16 7.79 5.85 86.93 0.51 8.30 16 11 C -0.11 -4.03 5.85 31.56 0.18 -3.84 16 12 C -0.07 -2.35 0.61 -51.87 -0.03 -2.38 16 13 C -0.11 -2.59 5.94 31.65 0.19 -2.40 16 14 C 0.11 2.58 5.89 87.01 0.51 3.10 16 15 N -0.60 -17.92 3.34 -815.61 -2.72 -20.64 16 16 C 0.58 18.34 7.84 86.82 0.68 19.02 16 17 O -0.57 -21.84 16.62 -3.84 -0.06 -21.91 16 18 C 0.10 2.60 6.72 41.96 0.28 2.88 16 19 C -0.12 -2.66 9.55 22.34 0.21 -2.45 16 20 C -0.03 -0.50 10.16 22.38 0.23 -0.28 16 21 C 0.01 0.26 7.25 39.69 0.29 0.55 16 22 N -0.53 -8.06 11.27 -191.65 -2.16 -10.22 16 23 C 0.32 1.77 12.96 180.04 2.33 4.10 16 24 N -0.57 -4.43 6.22 -195.69 -1.22 -5.65 16 25 H 0.45 0.51 8.96 -92.71 -0.83 -0.32 16 26 C 0.22 3.79 8.46 134.05 1.13 4.92 16 27 N -0.45 -9.62 6.58 -181.83 -1.20 -10.82 16 28 C 0.13 4.62 6.02 86.14 0.52 5.14 16 29 C 0.15 6.04 6.51 86.14 0.56 6.60 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.07 4.11 5.89 -2.39 -0.01 4.10 16 32 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 33 H 0.07 2.44 7.94 -2.39 -0.02 2.42 16 34 H 0.08 2.70 7.82 -2.39 -0.02 2.68 16 35 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 36 H 0.11 2.10 7.78 -2.38 -0.02 2.09 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 2.30 5.86 -2.39 -0.01 2.29 16 39 H 0.16 3.26 7.61 -2.91 -0.02 3.23 16 40 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.28 -1.95 8.06 -2.91 -0.02 -1.97 16 42 H 0.06 2.20 7.44 -2.39 -0.02 2.18 16 43 H 0.05 2.02 7.78 -2.39 -0.02 2.00 16 44 H 0.04 1.68 7.86 -2.39 -0.02 1.66 16 45 H 0.02 0.75 7.41 -2.38 -0.02 0.74 16 Total: -1.00 -81.45 362.75 1.66 -79.78 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.21 Total: 6.15 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 8.93 Total: 27.25 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -9.44 Total: -139.65 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.06 Total: -21.91 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -81.45 1.66 -79.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041389325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.860 kcal (2) G-P(sol) polarization free energy of solvation -81.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds