Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99645 * 2 1 4 4 H 1.48501 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47115 * 299.99771 * 3 2 1 6 6 H 1.48500 * 109.47132 * 60.00006 * 3 2 1 7 7 C 1.38804 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00181 * 180.02562 * 7 2 1 9 9 N 1.36948 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.47530 * 125.66889 * 0.02562 * 9 7 2 11 11 C 1.55132 * 104.97559 * 203.88470 * 10 9 7 12 12 C 1.53902 * 101.45384 * 324.25251 * 11 10 9 13 13 C 1.53398 * 111.11878 * 273.69714 * 12 11 10 14 14 C 1.55225 * 102.50325 * 259.61523 * 13 12 11 15 15 N 1.48308 * 103.45423 * 323.68982 * 14 13 12 16 16 C 1.34776 * 127.03898 * 218.51938 * 15 14 13 17 17 O 1.21623 * 120.00637 * 357.04039 * 16 15 14 18 18 C 1.47213 * 119.99599 * 177.04150 * 16 15 14 19 19 C 1.37755 * 119.93690 * 210.15187 * 18 16 15 20 20 C 1.39857 * 119.92655 * 179.73205 * 19 18 16 21 21 C 1.36299 * 119.82159 * 0.53230 * 20 19 18 22 22 C 1.40774 * 119.71085 * 359.73625 * 21 20 19 23 23 N 1.32815 * 132.74339 * 179.97438 * 22 21 20 24 24 C 1.32376 * 109.74096 * 179.97438 * 23 22 21 25 25 N 1.31389 * 109.61943 * 0.02562 * 24 23 22 26 26 N 1.36550 * 119.87361 * 359.97438 * 22 21 20 27 27 C 1.47836 * 105.94787 * 38.50092 * 15 14 13 28 28 C 1.47337 * 125.66922 * 179.97438 * 9 7 2 29 29 H 0.96995 * 120.00318 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.34312 * 322.76284 * 10 9 7 31 31 H 1.08998 * 110.34249 * 84.90710 * 10 9 7 32 32 H 1.09001 * 111.02896 * 206.20601 * 11 10 9 33 33 H 1.09007 * 111.03168 * 82.29230 * 11 10 9 34 34 H 1.08995 * 110.79918 * 17.86904 * 13 12 11 35 35 H 1.08995 * 110.79743 * 141.17097 * 13 12 11 36 36 H 1.09004 * 110.62703 * 82.14558 * 14 13 12 37 37 H 1.08993 * 110.62983 * 205.01662 * 14 13 12 38 38 H 1.07995 * 120.03398 * 359.97018 * 19 18 16 39 39 H 1.08001 * 120.09200 * 180.24499 * 20 19 18 40 40 H 1.08000 * 120.14642 * 179.71137 * 21 20 19 41 41 H 1.07998 * 125.19143 * 179.97438 * 24 23 22 42 42 H 1.09002 * 110.03545 * 215.56039 * 27 15 14 43 43 H 1.08998 * 110.03322 * 94.17352 * 27 15 14 44 44 H 1.09001 * 109.96987 * 58.71950 * 28 9 7 45 45 H 1.08998 * 109.96933 * 297.44985 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1425 -2.5339 -0.0005 11 6 -0.4065 -3.9368 0.6067 12 6 0.7827 -4.7395 0.0498 13 6 0.4661 -5.3034 -1.3412 14 6 0.1015 -6.7798 -1.0303 15 7 1.0247 -7.1381 0.0738 16 6 1.6559 -8.3151 0.2546 17 8 1.4502 -9.2392 -0.5090 18 6 2.5944 -8.4822 1.3764 19 6 3.6612 -9.3456 1.2574 20 6 4.5559 -9.4999 2.3212 21 6 4.3622 -8.8029 3.4764 22 6 3.2650 -7.9280 3.5877 23 7 2.8364 -7.1397 4.5669 24 6 1.7418 -6.5028 4.1815 25 7 1.4337 -6.8578 2.9546 26 7 2.4024 -7.7820 2.5393 27 6 1.1116 -5.9400 0.9355 28 6 1.9327 -3.7306 0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.6005 -1.7614 0.6172 31 1 -0.5277 -2.4815 -1.0188 32 1 -1.3535 -4.3443 0.2528 33 1 -0.3797 -3.9030 1.6959 34 1 -0.3805 -4.7812 -1.7869 35 1 1.3398 -5.2457 -1.9902 36 1 -0.9355 -6.8588 -0.7038 37 1 0.2777 -7.4105 -1.9016 38 1 3.8087 -9.8997 0.3423 39 1 5.3954 -10.1731 2.2294 40 1 5.0472 -8.9217 4.3029 41 1 1.1861 -5.7995 4.7840 42 1 2.1198 -5.8420 1.3382 43 1 0.3902 -6.0124 1.7494 44 1 2.5707 -3.8506 0.8761 45 1 2.5163 -3.8752 -0.9086 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041446162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = 144.690001 kcal Electronic energy + Delta-G solvation = -30572.532292 eV Core-core repulsion = 26594.186928 eV Total energy + Delta-G solvation = -3978.345364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.85215 -41.52485 -40.14670 -38.51878 -37.26589 -34.98685 -34.36808 -32.13934 -32.12109 -31.10293 -30.69406 -30.05928 -27.44509 -26.34591 -25.13248 -24.54417 -24.27206 -23.25076 -22.14241 -20.65389 -20.21042 -19.43135 -18.81729 -18.65833 -17.80076 -17.38316 -17.10435 -16.96883 -16.66729 -16.40629 -15.81545 -15.66847 -15.34224 -15.13358 -14.72109 -14.46496 -14.22355 -13.84298 -13.75843 -13.62990 -13.46070 -13.26626 -13.13583 -13.04324 -12.92073 -12.68425 -12.57290 -12.44805 -12.16934 -12.00729 -11.84075 -11.67431 -11.48362 -11.43754 -11.15930 -10.88160 -10.76042 -10.56664 -9.83201 -9.35727 -8.90122 -7.79169 -5.23393 -0.81799 -0.11269 0.83310 1.26473 1.45198 1.45669 1.55894 1.60879 1.77705 2.33901 2.47319 2.78877 3.02610 3.26702 3.35318 3.46200 3.56426 3.66019 3.78534 3.82516 3.93572 4.05829 4.18781 4.20864 4.31831 4.39314 4.53353 4.61549 4.64778 4.70210 4.78698 4.82168 4.91639 4.94660 4.95561 5.00688 5.11819 5.14088 5.22759 5.23641 5.28196 5.41893 5.44890 5.56355 5.65013 5.81818 6.21007 6.30040 6.69355 6.82013 7.09771 7.75603 8.40055 9.22507 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014233 B = 0.003471 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.756180 B = 8065.693203 C = 9019.725754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.241 4.241 8 H 0.074 0.926 9 N -0.623 5.623 10 C 0.159 3.841 11 C -0.111 4.111 12 C -0.082 4.082 13 C -0.109 4.109 14 C 0.112 3.888 15 N -0.604 5.604 16 C 0.577 3.423 17 O -0.554 6.554 18 C 0.054 3.946 19 C -0.065 4.065 20 C -0.049 4.049 21 C -0.080 4.080 22 C 0.256 3.744 23 N -0.563 5.563 24 C 0.224 3.776 25 N -0.354 5.354 26 N -0.284 5.284 27 C 0.148 3.852 28 C 0.154 3.846 29 H 0.248 0.752 30 H 0.071 0.929 31 H -0.008 1.008 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.190 0.810 39 H 0.212 0.788 40 H 0.191 0.809 41 H 0.248 0.752 42 H 0.052 0.948 43 H 0.116 0.884 44 H 0.011 0.989 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.687 -22.021 4.964 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.034 3.966 11 C -0.150 4.150 12 C -0.084 4.084 13 C -0.147 4.147 14 C -0.009 4.009 15 N -0.335 5.335 16 C 0.365 3.635 17 O -0.434 6.434 18 C -0.057 4.057 19 C -0.088 4.088 20 C -0.074 4.074 21 C -0.101 4.101 22 C 0.003 3.997 23 N -0.294 5.294 24 C -0.075 4.075 25 N -0.185 5.185 26 N -0.061 5.061 27 C 0.025 3.975 28 C 0.029 3.971 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.010 0.990 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.207 0.793 39 H 0.229 0.771 40 H 0.208 0.792 41 H 0.264 0.736 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.029 0.971 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.017 -21.931 4.613 23.205 hybrid contribution 0.238 1.556 -0.127 1.579 sum 6.255 -20.375 4.486 21.781 Atomic orbital electron populations 1.70047 1.06038 1.24989 1.58359 1.25559 0.96627 1.00684 1.02505 0.85029 0.77970 0.79534 0.76900 1.19499 1.21752 1.21590 1.19424 0.90794 0.83917 1.42909 0.90811 1.44873 1.02892 1.00415 1.86716 1.21739 0.83582 0.94579 0.96668 1.22787 0.96841 0.95437 0.99933 1.21660 0.96251 0.94064 0.96423 1.22579 1.02625 0.94360 0.95178 1.22696 0.93551 0.95000 0.89667 1.48958 1.44428 1.12410 1.27699 1.17329 0.80185 0.81714 0.84242 1.90825 1.65417 1.39818 1.47291 1.20558 1.00921 0.98872 0.85360 1.21945 0.90192 0.93821 1.02847 1.21786 0.99081 0.97306 0.89238 1.21092 0.94004 0.93327 1.01725 1.22602 0.94724 0.98144 0.84200 1.70807 1.15386 1.14863 1.28322 1.26902 0.92478 0.97513 0.90578 1.79285 1.13049 1.11117 1.15056 1.48129 1.19342 1.27097 1.11544 1.22758 1.02151 0.80977 0.91597 1.21263 0.94017 0.85079 0.96744 0.94241 0.91082 0.99004 0.89243 0.91712 0.89065 0.91403 0.89054 0.89017 0.79309 0.77125 0.79173 0.73612 0.93003 0.86697 0.97120 0.96576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.93 10.09 21.65 0.22 -55.71 16 2 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 3 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.24 -13.75 10.28 84.03 0.86 -12.89 16 8 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.62 -32.41 3.41 -692.93 -2.36 -34.77 16 10 C 0.16 7.71 5.79 86.91 0.50 8.21 16 11 C -0.11 -4.02 5.74 31.63 0.18 -3.84 16 12 C -0.08 -2.80 0.74 -51.80 -0.04 -2.83 16 13 C -0.11 -3.21 6.06 31.49 0.19 -3.02 16 14 C 0.11 2.87 7.09 86.79 0.62 3.49 16 15 N -0.60 -17.36 3.31 -813.93 -2.70 -20.05 16 16 C 0.58 16.46 7.68 86.60 0.66 17.12 16 17 O -0.55 -17.42 16.90 -4.10 -0.07 -17.49 16 18 C 0.05 1.28 6.41 40.57 0.26 1.54 16 19 C -0.06 -0.93 9.57 22.55 0.22 -0.71 16 20 C -0.05 -0.38 10.04 22.21 0.22 -0.15 16 21 C -0.08 -1.02 10.09 22.44 0.23 -0.80 16 22 C 0.26 5.92 7.88 134.16 1.06 6.97 16 23 N -0.56 -14.82 11.24 -198.18 -2.23 -17.05 16 24 C 0.22 5.69 12.98 180.83 2.35 8.04 16 25 N -0.35 -9.93 6.66 -61.38 -0.41 -10.34 16 26 N -0.28 -7.39 3.22 -181.80 -0.59 -7.97 16 27 C 0.15 4.53 4.00 86.05 0.34 4.88 16 28 C 0.15 6.61 6.45 86.24 0.56 7.16 16 29 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.07 3.95 5.89 -2.39 -0.01 3.94 16 31 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 32 H 0.09 2.73 7.94 -2.39 -0.02 2.71 16 33 H 0.06 2.32 7.92 -2.38 -0.02 2.30 16 34 H 0.09 2.64 7.77 -2.39 -0.02 2.62 16 35 H 0.07 2.08 7.49 -2.39 -0.02 2.06 16 36 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.09 2.23 7.90 -2.39 -0.02 2.21 16 38 H 0.19 1.92 7.87 -2.91 -0.02 1.89 16 39 H 0.21 -0.54 8.06 -2.91 -0.02 -0.57 16 40 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.25 4.54 8.06 -2.91 -0.02 4.52 16 42 H 0.05 1.75 5.49 -2.39 -0.01 1.73 16 43 H 0.12 3.53 5.41 -2.99 -0.02 3.52 16 44 H 0.01 0.48 7.46 -2.39 -0.02 0.46 16 45 H 0.02 0.71 7.43 -2.39 -0.02 0.69 16 Total: -1.00 -77.47 357.16 3.60 -73.87 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.02 Total: 11.44 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: 8.68 Total: 30.17 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -8.06 Total: -145.89 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.07 Total: -17.49 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.47 3.60 -73.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041446162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.563 kcal (2) G-P(sol) polarization free energy of solvation -77.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds