Wall clock time and date at job start Sat Apr 11 2020 06:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48499 * 109.46703 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47213 * 300.00294 * 3 2 1 6 6 H 1.48505 * 109.46978 * 60.00601 * 3 2 1 7 7 C 1.38808 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99917 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.47552 * 125.85892 * 14.87728 * 9 7 2 11 11 C 1.55061 * 104.85230 * 156.09240 * 10 9 7 12 12 C 1.55068 * 101.27142 * 35.97279 * 11 10 9 13 13 H 1.08997 * 106.68099 * 78.30005 * 12 11 10 14 14 C 1.48860 * 111.54314 * 194.53552 * 12 11 10 15 15 C 1.50605 * 117.90899 * 101.51258 * 14 12 11 16 16 N 1.45231 * 112.83593 * 27.68117 * 15 14 12 17 17 C 1.34777 * 119.33760 * 136.00089 * 16 15 14 18 18 O 1.21620 * 120.00232 * 1.93850 * 17 16 15 19 19 C 1.47210 * 119.99719 * 181.94036 * 17 16 15 20 20 C 1.37756 * 119.93902 * 230.51758 * 19 17 16 21 21 C 1.39853 * 119.93072 * 180.02562 * 20 19 17 22 22 C 1.36307 * 119.82146 * 359.97438 * 21 20 19 23 23 C 1.40770 * 119.70433 * 0.02562 * 22 21 20 24 24 N 1.32821 * 132.73923 * 180.02562 * 23 22 21 25 25 C 1.32376 * 109.74140 * 179.29500 * 24 23 22 26 26 N 1.31395 * 109.61601 * 0.61100 * 25 24 23 27 27 N 1.36549 * 119.88123 * 359.72386 * 23 22 21 28 28 C 1.44679 * 120.74543 * 315.60364 * 16 15 14 29 29 C 1.47631 * 125.85821 * 194.85478 * 9 7 2 30 30 H 1.08999 * 108.10058 * 64.74445 * 29 9 7 31 31 H 0.97006 * 119.99809 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.36325 * 37.25512 * 10 9 7 33 33 H 1.08997 * 110.45838 * 274.98632 * 10 9 7 34 34 H 1.09004 * 111.06958 * 153.98034 * 11 10 9 35 35 H 1.08995 * 111.07413 * 277.96260 * 11 10 9 36 36 H 1.08998 * 107.75419 * 223.64299 * 14 12 11 37 37 H 1.08997 * 107.75929 * 339.37432 * 14 12 11 38 38 H 1.08993 * 108.81251 * 148.54778 * 15 14 12 39 39 H 1.09004 * 108.81118 * 266.81668 * 15 14 12 40 40 H 1.08006 * 120.03343 * 359.97067 * 20 19 17 41 41 H 1.08001 * 120.09053 * 179.97438 * 21 20 19 42 42 H 1.07995 * 120.14247 * 180.02562 * 22 21 20 43 43 H 1.08006 * 125.18910 * 180.10695 * 25 24 23 44 44 H 1.09002 * 109.26442 * 288.39966 * 28 16 15 45 45 H 1.09000 * 108.17333 * 170.06033 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1077 -2.5586 -0.3071 11 6 -0.2424 -4.0320 -0.7710 12 6 0.7893 -4.7349 0.1489 13 1 0.3152 -4.8445 1.1242 14 6 1.1044 -6.1079 -0.3322 15 6 2.3939 -6.3134 -1.0825 16 7 3.4225 -5.3592 -0.7073 17 6 4.6821 -5.7927 -0.5019 18 8 4.9555 -6.9664 -0.6653 19 6 5.7268 -4.8454 -0.0795 20 6 6.9252 -4.7967 -0.7569 21 6 7.9178 -3.8971 -0.3552 22 6 7.6947 -3.0710 0.7058 23 6 6.4658 -3.1304 1.3898 24 7 5.9807 -2.4639 2.4313 25 6 4.7512 -2.8782 2.6940 26 7 4.4140 -3.8242 1.8467 27 7 5.5032 -4.0098 0.9840 28 6 3.1102 -3.9541 -0.5614 29 6 1.8948 -3.7153 0.3057 30 1 2.2136 -3.7147 1.3480 31 1 -0.4850 0.8401 0.0004 32 1 -0.4080 -1.8805 -1.1059 33 1 -0.7111 -2.3848 0.5838 34 1 -1.2490 -4.4092 -0.5907 35 1 0.0316 -4.1390 -1.8205 36 1 1.1150 -6.7693 0.5341 37 1 0.2884 -6.4288 -0.9796 38 1 2.7596 -7.3207 -0.8837 39 1 2.1983 -6.2173 -2.1506 40 1 7.0985 -5.4533 -1.5969 41 1 8.8585 -3.8570 -0.8842 42 1 8.4574 -2.3740 1.0201 43 1 4.1243 -2.5022 3.4890 44 1 2.9330 -3.5210 -1.5459 45 1 3.9701 -3.4599 -0.1091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042139632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:08 Heat of formation + Delta-G solvation = 147.694307 kcal Electronic energy + Delta-G solvation = -31568.196837 eV Core-core repulsion = 27589.981749 eV Total energy + Delta-G solvation = -3978.215088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.78837 -40.35966 -38.60239 -37.46423 -35.40828 -34.07508 -33.07016 -31.63760 -30.95903 -30.12070 -29.14647 -28.60386 -25.74158 -24.46572 -24.05215 -23.50363 -22.97614 -21.93073 -20.48231 -19.86766 -18.53298 -17.74997 -17.25330 -16.95350 -16.77080 -16.40357 -15.83389 -15.75850 -15.09041 -14.99286 -14.77749 -14.24590 -14.01135 -13.84771 -13.61484 -13.06050 -12.81972 -12.75923 -12.54896 -12.21011 -12.15600 -11.85371 -11.75865 -11.72448 -11.35007 -11.08559 -10.92942 -10.89042 -10.72271 -10.34827 -10.10150 -10.04255 -9.90874 -9.84902 -9.61537 -9.58729 -9.45205 -8.65530 -8.44672 -8.31083 -6.82227 -5.79210 -3.14642 0.22129 0.89673 1.82002 2.47918 2.83773 2.95597 3.31840 3.35262 3.42660 3.43935 3.90565 4.06702 4.37158 4.46071 4.63401 4.80608 4.93280 5.05244 5.06534 5.17514 5.21236 5.35814 5.44932 5.54848 5.58203 5.67397 5.75571 5.78017 5.87597 5.95212 6.02219 6.11813 6.14416 6.24241 6.28465 6.33058 6.41734 6.58268 6.59290 6.63761 6.68300 6.88992 7.08915 7.38267 7.48673 7.58356 7.74848 7.96482 7.99527 8.22754 9.14742 9.75555 10.45222 11.33177 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.006081 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.669067 B = 4603.444300 C = 6668.318305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.223 4.223 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.090 4.090 13 H 0.061 0.939 14 C -0.111 4.111 15 C 0.116 3.884 16 N -0.568 5.568 17 C 0.562 3.438 18 O -0.532 6.532 19 C 0.108 3.892 20 C -0.104 4.104 21 C -0.071 4.071 22 C -0.084 4.084 23 C 0.274 3.726 24 N -0.538 5.538 25 C 0.247 3.753 26 N -0.311 5.311 27 N -0.277 5.277 28 C 0.096 3.904 29 C 0.167 3.833 30 H 0.049 0.951 31 H 0.253 0.747 32 H 0.068 0.932 33 H 0.027 0.973 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.227 0.773 44 H 0.064 0.936 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 -10.515 -1.691 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.352 4.352 8 H 0.086 0.914 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.183 4.183 12 C -0.109 4.109 13 H 0.080 0.920 14 C -0.149 4.149 15 C -0.006 4.006 16 N -0.297 5.297 17 C 0.347 3.653 18 O -0.410 6.410 19 C -0.004 4.004 20 C -0.127 4.127 21 C -0.097 4.097 22 C -0.106 4.106 23 C 0.020 3.980 24 N -0.267 5.267 25 C -0.053 4.053 26 N -0.140 5.140 27 N -0.055 5.055 28 C -0.029 4.029 29 C 0.059 3.941 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.243 0.757 44 H 0.082 0.918 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.206 -10.925 -1.401 15.016 hybrid contribution 0.371 1.156 0.002 1.214 sum 10.577 -9.770 -1.399 14.466 Atomic orbital electron populations 1.69943 1.04903 1.25063 1.56235 1.24848 0.95622 0.97603 1.01735 0.86154 0.78950 0.84020 0.77359 1.20488 1.21733 1.21515 1.18845 0.89883 0.82154 1.44285 0.91429 1.44677 1.05965 1.00416 1.80691 1.21445 0.85199 0.89856 0.98763 1.23228 0.97000 0.99651 0.98438 1.20443 0.97382 0.93132 0.99943 0.92002 1.20404 0.96624 0.97483 1.00435 1.20735 0.87668 0.93338 0.98866 1.47039 1.07327 1.10175 1.65143 1.17604 0.82322 0.86820 0.78547 1.90821 1.81051 1.15962 1.53131 1.20316 0.97063 0.93440 0.89570 1.21279 0.90251 1.00455 1.00731 1.21142 0.99620 0.93463 0.95474 1.20467 0.93666 1.01118 0.95324 1.21873 0.92253 0.90075 0.93786 1.70831 1.11245 1.28820 1.15842 1.26233 0.91238 0.90819 0.97027 1.78888 1.03837 1.24828 1.06466 1.48059 1.12377 1.24190 1.20848 1.21834 1.01686 0.77948 1.01423 1.19945 0.90237 0.86724 0.97191 0.93341 0.93710 0.91333 0.95492 0.92232 0.92475 0.92417 0.90805 0.89278 0.91962 0.81769 0.82593 0.82293 0.75726 0.91784 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.25 10.62 55.49 0.59 -25.67 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.12 16 3 Si 0.90 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.00 9.77 -15.06 -0.15 -6.15 16 8 H 0.07 1.83 7.71 -52.49 -0.40 1.43 16 9 N -0.59 -14.48 3.16 -164.76 -0.52 -15.00 16 10 C 0.17 4.05 5.43 -2.38 -0.01 4.04 16 11 C -0.14 -2.63 6.24 -24.55 -0.15 -2.79 16 12 C -0.09 -1.57 2.63 -92.46 -0.24 -1.81 16 13 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 14 C -0.11 -1.57 5.55 -29.96 -0.17 -1.74 16 15 C 0.12 1.69 6.32 -5.92 -0.04 1.65 16 16 N -0.57 -9.45 3.03 -180.01 -0.55 -9.99 16 17 C 0.56 9.25 7.19 -12.62 -0.09 9.16 16 18 O -0.53 -9.39 16.33 5.26 0.09 -9.30 16 19 C 0.11 1.61 5.61 -82.05 -0.46 1.15 16 20 C -0.10 -1.12 9.69 -39.15 -0.38 -1.50 16 21 C -0.07 -0.60 10.04 -39.67 -0.40 -1.00 16 22 C -0.08 -0.91 10.09 -39.32 -0.40 -1.30 16 23 C 0.27 4.20 7.88 -156.38 -1.23 2.97 16 24 N -0.54 -9.05 11.24 -13.99 -0.16 -9.21 16 25 C 0.25 4.12 12.98 -91.99 -1.19 2.93 16 26 N -0.31 -5.57 8.43 29.25 0.25 -5.32 16 27 N -0.28 -4.56 2.71 -8.82 -0.02 -4.58 16 28 C 0.10 1.83 4.46 -5.92 -0.03 1.80 16 29 C 0.17 3.41 3.18 -69.12 -0.22 3.19 16 30 H 0.05 1.07 6.34 -51.93 -0.33 0.74 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.07 1.80 6.98 -51.93 -0.36 1.44 16 33 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.07 0.90 7.65 -51.93 -0.40 0.51 16 38 H 0.09 1.26 6.92 -51.93 -0.36 0.90 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.23 3.08 8.06 -52.48 -0.42 2.66 16 44 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 45 H 0.08 1.55 3.74 -51.93 -0.19 1.36 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -33.31 355.61 -11.07 -44.38 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.82 Total: 1.90 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: -5.25 Total: 10.48 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -0.41 Total: -69.76 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.31 -11.07 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042139632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.074 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds