Wall clock time and date at job start Sat Apr 11 2020 06:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00214 * 2 1 4 4 H 1.48495 * 109.47350 * 270.00398 * 3 2 1 5 5 H 1.48500 * 109.46952 * 30.00409 * 3 2 1 6 6 H 1.48502 * 109.47010 * 149.99998 * 3 2 1 7 7 C 1.38819 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99282 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99980 * 359.97438 * 7 2 1 10 10 C 1.48149 * 126.40006 * 0.04461 * 9 7 2 11 11 C 1.55300 * 107.04575 * 184.96659 * 10 9 7 12 12 C 1.53704 * 101.81118 * 22.44281 * 11 10 9 13 13 H 1.08990 * 111.11324 * 78.60776 * 12 11 10 14 14 C 1.51984 * 114.99873 * 206.55007 * 12 11 10 15 15 C 1.53885 * 107.29269 * 175.43132 * 14 12 11 16 16 N 1.46628 * 110.79525 * 308.25544 * 15 14 12 17 17 C 1.34781 * 119.78300 * 227.68180 * 16 15 14 18 18 O 1.21617 * 120.00560 * 174.74319 * 17 16 15 19 19 C 1.47211 * 119.99501 * 354.74312 * 17 16 15 20 20 C 1.37759 * 119.93707 * 131.72155 * 19 17 16 21 21 C 1.39863 * 119.92947 * 179.76927 * 20 19 17 22 22 C 1.36301 * 119.81737 * 0.50311 * 21 20 19 23 23 C 1.40772 * 119.71130 * 359.75088 * 22 21 20 24 24 N 1.32819 * 132.74436 * 180.02562 * 23 22 21 25 25 C 1.32371 * 109.74685 * 179.97438 * 24 23 22 26 26 N 1.31390 * 109.61604 * 359.97438 * 25 24 23 27 27 N 1.36550 * 119.87935 * 359.97438 * 23 22 21 28 28 C 1.47800 * 120.46597 * 47.53901 * 16 15 14 29 29 C 1.45501 * 126.39561 * 179.97438 * 9 7 2 30 30 H 1.09002 * 109.57306 * 265.88183 * 29 9 7 31 31 H 0.96995 * 119.99923 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.92457 * 304.31559 * 10 9 7 33 33 H 1.09002 * 109.92343 * 65.61551 * 10 9 7 34 34 H 1.08997 * 110.96508 * 140.57135 * 11 10 9 35 35 H 1.09005 * 110.95838 * 264.31887 * 11 10 9 36 36 H 1.09006 * 109.88562 * 294.87702 * 14 12 11 37 37 H 1.09000 * 109.89386 * 55.90468 * 14 12 11 38 38 H 1.08998 * 109.22941 * 68.50744 * 15 14 12 39 39 H 1.09006 * 109.22422 * 187.91191 * 15 14 12 40 40 H 1.08001 * 120.03519 * 0.02562 * 20 19 17 41 41 H 1.08000 * 120.09277 * 180.22924 * 21 20 19 42 42 H 1.08004 * 120.14737 * 179.77233 * 22 21 20 43 43 H 1.07993 * 125.19415 * 180.02562 * 25 24 23 44 44 H 1.09000 * 110.06183 * 189.66537 * 28 16 15 45 45 H 1.09004 * 110.06379 * 68.21233 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1468 -2.5531 -0.0009 11 6 -0.4345 -4.0738 0.1278 12 6 0.8680 -4.5878 0.7618 13 1 0.8912 -4.3829 1.8320 14 6 1.1973 -6.0413 0.4639 15 6 2.5772 -6.3331 1.0793 16 7 3.5614 -5.3360 0.6470 17 6 4.7654 -5.7368 0.1927 18 8 5.5484 -4.9216 -0.2560 19 6 5.1326 -7.1616 0.2398 20 6 5.6638 -7.7719 -0.8752 21 6 6.0171 -9.1243 -0.8289 22 6 5.8246 -9.8362 0.3174 23 6 5.2760 -9.2026 1.4484 24 7 4.9835 -9.6338 2.6701 25 6 4.4780 -8.6414 3.3856 26 7 4.4301 -7.5505 2.6547 27 7 4.9406 -7.8801 1.3915 28 6 3.2415 -3.8941 0.7028 29 6 1.9080 -3.7214 -0.0016 30 1 1.9858 -4.0851 -1.0262 31 1 -0.4850 0.8400 0.0004 32 1 -0.5805 -2.0203 0.8452 33 1 -0.5628 -2.1742 -0.9345 34 1 -1.2857 -4.2555 0.7839 35 1 -0.5957 -4.5244 -0.8516 36 1 0.4460 -6.6913 0.9127 37 1 1.2294 -6.2010 -0.6139 38 1 2.4979 -6.3090 2.1662 39 1 2.9081 -7.3232 0.7655 40 1 5.8111 -7.2055 -1.7829 41 1 6.4372 -9.6044 -1.7004 42 1 6.0921 -10.8818 0.3579 43 1 4.1551 -8.7166 4.4133 44 1 4.0127 -3.3198 0.1893 45 1 3.1619 -3.5686 1.7401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042139633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:11 Heat of formation + Delta-G solvation = 138.800994 kcal Electronic energy + Delta-G solvation = -30452.146728 eV Core-core repulsion = 26473.545997 eV Total energy + Delta-G solvation = -3978.600731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.05786 -40.33989 -38.66821 -37.63514 -35.56766 -33.95929 -32.93251 -31.39127 -31.21547 -30.45231 -29.37632 -28.53117 -25.50100 -24.67877 -23.82573 -23.72095 -22.60368 -22.26452 -20.22617 -19.93418 -19.20277 -18.33927 -17.81126 -16.97497 -16.74523 -16.44905 -15.97118 -15.86426 -15.04830 -14.78324 -14.55910 -14.38048 -14.08096 -13.80310 -13.45746 -13.23569 -13.08581 -13.02825 -12.77226 -12.48894 -12.29215 -12.06508 -11.91651 -11.64526 -11.52735 -11.25437 -10.97840 -10.84521 -10.77443 -10.43969 -10.17701 -10.08556 -10.00618 -9.91280 -9.87846 -9.67441 -9.51972 -8.65151 -8.64146 -8.54364 -6.88296 -5.73614 -3.07746 -0.02393 0.58128 1.55849 2.21848 2.64136 2.78011 3.04247 3.41033 3.46654 3.48213 3.59718 3.80545 4.15099 4.39467 4.49092 4.51544 4.73847 4.81474 4.92452 4.97392 5.10044 5.31648 5.35703 5.49603 5.54483 5.62983 5.64751 5.73470 5.76913 5.84075 5.87929 5.97417 6.02257 6.05037 6.09386 6.13456 6.26563 6.29397 6.40986 6.51701 6.61693 6.69433 6.99904 7.31132 7.52729 7.58358 7.61749 7.79262 7.93501 8.20970 9.16980 9.79811 10.46136 11.38649 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.003187 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.412891 B = 8784.192111 C = 9378.558429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.138 4.138 12 C -0.113 4.113 13 H 0.079 0.921 14 C -0.120 4.120 15 C 0.118 3.882 16 N -0.579 5.579 17 C 0.558 3.442 18 O -0.518 6.518 19 C 0.109 3.891 20 C -0.100 4.100 21 C -0.064 4.064 22 C -0.091 4.091 23 C 0.276 3.724 24 N -0.543 5.543 25 C 0.235 3.765 26 N -0.326 5.326 27 N -0.273 5.273 28 C 0.117 3.883 29 C 0.158 3.842 30 H 0.024 0.976 31 H 0.252 0.748 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.169 0.831 41 H 0.159 0.841 42 H 0.161 0.839 43 H 0.227 0.773 44 H 0.095 0.905 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.132 -22.346 0.619 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.316 5.316 10 C 0.054 3.946 11 C -0.176 4.176 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.005 4.005 16 N -0.310 5.310 17 C 0.342 3.658 18 O -0.394 6.394 19 C -0.003 4.003 20 C -0.123 4.123 21 C -0.090 4.090 22 C -0.112 4.112 23 C 0.022 3.978 24 N -0.273 5.273 25 C -0.065 4.065 26 N -0.157 5.157 27 N -0.051 5.051 28 C -0.005 4.005 29 C 0.048 3.952 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.186 0.814 41 H 0.177 0.823 42 H 0.178 0.822 43 H 0.243 0.757 44 H 0.113 0.887 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.180 -21.251 0.977 22.452 hybrid contribution 0.422 0.769 -0.017 0.877 sum 7.602 -20.482 0.960 21.868 Atomic orbital electron populations 1.69943 1.04901 1.25119 1.56844 1.24787 0.95686 0.97667 1.02024 0.86136 0.78687 0.83452 0.77643 1.21553 1.21681 1.20564 1.19041 0.90438 0.82233 1.44102 0.90250 1.44163 1.01667 0.99084 1.86694 1.21547 0.83592 0.88445 1.01048 1.22733 0.95955 0.99666 0.99248 1.22287 0.97515 0.93126 1.00360 0.90305 1.21833 0.95204 0.97713 1.01072 1.21840 0.88667 0.89792 1.00226 1.48168 1.13141 1.08647 1.61055 1.17558 0.83023 0.85709 0.79484 1.90886 1.50465 1.52361 1.45716 1.20569 1.01948 0.93070 0.84714 1.21423 0.98101 0.95544 0.97219 1.21233 0.96375 0.93019 0.98357 1.20479 1.00028 1.01745 0.88947 1.21881 0.98113 0.82630 0.95143 1.70836 1.24592 1.30734 1.01143 1.26260 0.94268 0.85202 1.00813 1.78846 1.26119 1.22809 0.87941 1.47978 1.38583 1.09114 1.09419 1.21859 0.99415 0.77195 1.01986 1.20974 0.90787 0.87809 0.95583 0.95832 0.93727 0.92555 0.94361 0.92163 0.92559 0.90814 0.91501 0.90164 0.92068 0.81351 0.82343 0.82160 0.75678 0.88665 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.82 10.44 55.49 0.58 -26.24 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.34 9.88 -15.06 -0.15 -6.49 16 8 H 0.08 2.14 7.41 -52.49 -0.39 1.75 16 9 N -0.59 -14.80 3.35 -162.89 -0.55 -15.35 16 10 C 0.18 4.23 5.45 -1.92 -0.01 4.22 16 11 C -0.14 -2.49 6.54 -25.15 -0.16 -2.66 16 12 C -0.11 -1.94 2.61 -89.49 -0.23 -2.17 16 13 H 0.08 1.41 8.13 -51.93 -0.42 0.98 16 14 C -0.12 -1.63 5.72 -26.79 -0.15 -1.78 16 15 C 0.12 1.62 4.57 -3.51 -0.02 1.61 16 16 N -0.58 -9.40 3.02 -174.05 -0.52 -9.92 16 17 C 0.56 9.04 7.22 -12.61 -0.09 8.95 16 18 O -0.52 -9.94 16.37 5.26 0.09 -9.86 16 19 C 0.11 1.38 5.36 -82.04 -0.44 0.94 16 20 C -0.10 -0.89 9.67 -39.15 -0.38 -1.26 16 21 C -0.06 -0.38 10.04 -39.67 -0.40 -0.78 16 22 C -0.09 -0.66 10.09 -39.32 -0.40 -1.06 16 23 C 0.28 3.08 7.88 -156.38 -1.23 1.84 16 24 N -0.54 -6.40 11.24 -13.99 -0.16 -6.56 16 25 C 0.23 2.54 12.98 -92.00 -1.19 1.35 16 26 N -0.33 -4.29 9.86 29.25 0.29 -4.01 16 27 N -0.27 -3.47 2.81 -8.81 -0.02 -3.50 16 28 C 0.12 2.25 5.70 -3.94 -0.02 2.22 16 29 C 0.16 3.22 2.77 -67.80 -0.19 3.03 16 30 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.48 7.21 -51.93 -0.37 1.11 16 33 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 38 H 0.08 1.12 7.22 -51.93 -0.38 0.75 16 39 H 0.06 0.79 5.46 -51.93 -0.28 0.51 16 40 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.16 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.23 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.10 2.02 6.74 -51.93 -0.35 1.67 16 45 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -34.23 358.85 -11.02 -45.25 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.94 Total: -0.18 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -5.16 Total: 7.72 kcal Atomic # 7 Polarization: -65.19 SS G_CDS: -0.38 Total: -65.57 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.23 -11.02 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042139633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.049 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds