Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99769 * 2 1 4 4 H 1.48496 * 109.46638 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47349 * 300.00213 * 3 2 1 6 6 H 1.48503 * 109.47102 * 60.00448 * 3 2 1 7 7 C 1.38804 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00443 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99698 * 359.97438 * 7 2 1 10 10 C 1.46880 * 125.58653 * 359.97438 * 9 7 2 11 11 C 1.54054 * 107.71050 * 177.05540 * 10 9 7 12 12 C 1.54070 * 103.74156 * 342.86054 * 11 10 9 13 13 H 1.08997 * 109.15942 * 273.54651 * 12 11 10 14 14 C 1.47664 * 125.57904 * 180.02562 * 9 7 2 15 15 H 1.08999 * 110.56372 * 322.55745 * 14 9 7 16 16 C 1.52924 * 107.99182 * 83.57798 * 14 9 7 17 17 C 1.52946 * 109.78691 * 171.84014 * 16 14 9 18 18 C 1.53042 * 108.66324 * 293.90477 * 17 16 14 19 19 N 1.44185 * 111.76570 * 153.26193 * 12 11 10 20 20 C 1.34783 * 117.75613 * 93.56068 * 19 12 11 21 21 O 1.21571 * 120.00282 * 356.59244 * 20 19 12 22 22 C 1.47690 * 119.99666 * 176.58990 * 20 19 12 23 23 C 1.39981 * 120.38191 * 226.98069 * 22 20 19 24 24 N 1.31398 * 121.15271 * 179.71641 * 23 22 20 25 25 C 1.32543 * 121.79431 * 0.60996 * 24 23 22 26 26 N 1.37573 * 133.56396 * 179.70147 * 25 24 23 27 27 H 0.97001 * 126.23946 * 359.92704 * 26 25 24 28 28 C 1.36170 * 107.52646 * 179.97438 * 26 25 24 29 29 N 1.30059 * 110.11012 * 359.97438 * 28 26 25 30 30 C 1.35773 * 109.43567 * 0.02562 * 29 28 26 31 31 C 1.39489 * 133.74888 * 179.97438 * 30 29 28 32 32 H 0.97002 * 119.99979 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.80577 * 296.59730 * 10 9 7 34 34 H 1.09001 * 109.81474 * 57.49492 * 10 9 7 35 35 H 1.09001 * 110.57388 * 101.42678 * 11 10 9 36 36 H 1.08999 * 110.56791 * 224.30243 * 11 10 9 37 37 H 1.09003 * 109.41589 * 51.74781 * 16 14 9 38 38 H 1.08990 * 109.42013 * 291.94093 * 16 14 9 39 39 H 1.09001 * 109.62851 * 53.71443 * 17 16 14 40 40 H 1.09004 * 109.62793 * 174.10382 * 17 16 14 41 41 H 1.09007 * 109.45651 * 173.93031 * 18 17 16 42 42 H 1.08998 * 109.46120 * 293.88199 * 18 17 16 43 43 H 1.07996 * 119.42144 * 0.02562 * 23 22 20 44 44 H 1.08001 * 124.94461 * 179.97438 * 28 26 25 45 45 H 1.08001 * 120.97319 * 0.03070 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1362 -2.5309 0.0005 11 6 -0.4601 -4.0351 -0.0753 12 6 0.8586 -4.6696 -0.5573 13 1 0.8901 -4.6451 -1.6465 14 6 1.9360 -3.7325 -0.0005 15 1 2.8321 -3.7461 -0.6210 16 6 2.2795 -4.0954 1.4448 17 6 2.7262 -5.5562 1.5197 18 6 1.5355 -6.4511 1.1684 19 7 0.9840 -6.0383 -0.1217 20 6 0.5641 -7.0053 -0.9615 21 8 0.0420 -6.7080 -2.0183 22 6 0.7384 -8.4260 -0.5977 23 6 1.2606 -9.3353 -1.5250 24 7 1.4273 -10.6015 -1.2158 25 6 1.1000 -11.0779 -0.0230 26 7 1.1624 -12.3278 0.5484 27 1 1.4878 -13.1369 0.1238 28 6 0.6830 -12.2224 1.8186 29 7 0.3322 -10.9942 2.0637 30 6 0.5634 -10.2305 0.9651 31 6 0.3784 -8.8791 0.6736 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5478 -2.1103 0.9181 34 1 -0.5583 -2.0180 -0.8637 35 1 -0.7325 -4.4183 0.9081 36 1 -1.2587 -4.2192 -0.7939 37 1 1.4001 -3.9527 2.0729 38 1 3.0846 -3.4515 1.7985 39 1 3.5358 -5.7284 0.8104 40 1 3.0695 -5.7828 2.5292 41 1 1.8651 -7.4886 1.1124 42 1 0.7694 -6.3549 1.9378 43 1 1.5360 -8.9891 -2.5102 44 1 0.6054 -13.0397 2.5203 45 1 -0.0306 -8.2026 1.4095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049504332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = 95.478482 kcal Electronic energy + Delta-G solvation = -29944.893198 eV Core-core repulsion = 25964.413863 eV Total energy + Delta-G solvation = -3980.479336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.74885 -40.66333 -38.69890 -37.57399 -35.51111 -34.08250 -32.61780 -32.46679 -31.48489 -30.18537 -28.95979 -28.32330 -25.40049 -24.58462 -24.22949 -23.60616 -22.30082 -21.85200 -20.64417 -19.99353 -19.12277 -18.35088 -17.79187 -17.16507 -16.89885 -16.31626 -15.96458 -15.81779 -14.99740 -14.76663 -14.53863 -14.37013 -14.22949 -13.87046 -13.55995 -13.50569 -13.30391 -13.00199 -12.74869 -12.47366 -12.10331 -11.96570 -11.57791 -11.44468 -11.38239 -11.03049 -10.95022 -10.77495 -10.66224 -10.49450 -10.20137 -10.05177 -9.88053 -9.64286 -9.58633 -9.47717 -9.11154 -8.95539 -8.59497 -8.35688 -6.85646 -5.70551 -3.05357 0.37933 0.61850 2.11867 2.35088 2.68173 3.03603 3.40517 3.43654 3.45996 3.48468 3.68960 4.01166 4.30775 4.41914 4.48551 4.52356 4.73589 4.92722 4.96595 5.10528 5.27550 5.37586 5.40491 5.46858 5.54024 5.61205 5.63601 5.69877 5.70185 5.89058 6.00172 6.08710 6.10488 6.22922 6.30896 6.38304 6.57208 6.59869 6.63534 6.74773 6.96631 7.07001 7.23571 7.41009 7.49762 7.58334 7.65724 7.84826 8.21107 8.27183 9.21678 9.81429 10.46135 11.40284 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028109 B = 0.002592 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.890040 B =10801.044641 C =11095.371753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.179 3.821 11 C -0.150 4.150 12 C 0.137 3.863 13 H 0.094 0.906 14 C 0.162 3.838 15 H 0.056 0.944 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.101 3.899 19 N -0.577 5.577 20 C 0.558 3.442 21 O -0.527 6.527 22 C -0.183 4.183 23 C 0.192 3.808 24 N -0.485 5.485 25 C 0.252 3.748 26 N -0.590 5.590 27 H 0.430 0.570 28 C 0.275 3.725 29 N -0.480 5.480 30 C -0.006 4.006 31 C 0.017 3.983 32 H 0.252 0.748 33 H 0.040 0.960 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.177 0.823 44 H 0.227 0.773 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -25.929 4.167 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.190 4.190 12 C 0.033 3.967 13 H 0.112 0.888 14 C 0.053 3.947 15 H 0.074 0.926 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.022 4.022 19 N -0.308 5.308 20 C 0.344 3.656 21 O -0.404 6.404 22 C -0.191 4.191 23 C 0.024 3.976 24 N -0.198 5.198 25 C 0.016 3.984 26 N -0.205 5.205 27 H 0.270 0.730 28 C -0.013 4.013 29 N -0.200 5.200 30 C -0.126 4.126 31 C -0.011 4.011 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.194 0.806 44 H 0.243 0.757 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.792 -25.705 3.835 26.139 hybrid contribution 0.534 0.600 -0.077 0.807 sum 3.327 -25.105 3.759 25.602 Atomic orbital electron populations 1.69985 1.04862 1.24944 1.56887 1.24806 0.95707 0.97649 1.02167 0.86051 0.78695 0.83815 0.77216 1.20523 1.21753 1.21810 1.19052 0.90435 0.82106 1.43856 0.90351 1.44519 1.01533 0.99240 1.86702 1.21067 0.84247 0.87976 1.01311 1.22995 0.96482 0.99364 1.00110 1.21178 0.96857 0.78551 1.00076 0.88837 1.20905 0.93920 0.86121 0.93758 0.92641 1.22133 1.01577 0.93345 1.00070 1.21845 0.96955 0.96742 1.01488 1.21929 0.96522 0.98941 0.84776 1.47173 1.60463 1.06304 1.16879 1.18026 0.79091 0.84378 0.84144 1.90818 1.42681 1.82958 1.23950 1.20738 1.06941 0.96074 0.95364 1.22670 0.91222 0.85142 0.98610 1.66497 1.20306 1.16053 1.16904 1.19164 1.00128 0.86891 0.92235 1.42870 1.54954 1.08979 1.13667 0.73026 1.25532 0.94631 0.96881 0.84256 1.70512 1.22214 1.01459 1.25772 1.19506 1.05987 0.94911 0.92172 1.21051 0.92845 0.92276 0.94919 0.93771 0.94145 0.92889 0.92535 0.91740 0.91898 0.91771 0.91647 0.91076 0.90017 0.91494 0.80647 0.75718 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.29 55.49 0.57 -26.27 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.15 10.27 -15.06 -0.15 -6.30 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.74 2.94 -163.73 -0.48 -15.22 16 10 C 0.18 4.35 5.39 -3.28 -0.02 4.33 16 11 C -0.15 -2.95 6.44 -25.62 -0.17 -3.12 16 12 C 0.14 2.54 2.73 -68.47 -0.19 2.35 16 13 H 0.09 1.90 7.10 -51.93 -0.37 1.53 16 14 C 0.16 3.22 3.29 -67.20 -0.22 3.00 16 15 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 16 C -0.13 -2.24 5.31 -26.80 -0.14 -2.38 16 17 C -0.13 -1.69 6.08 -26.74 -0.16 -1.86 16 18 C 0.10 1.24 4.84 -4.15 -0.02 1.22 16 19 N -0.58 -8.73 2.81 -168.32 -0.47 -9.21 16 20 C 0.56 8.51 7.18 -12.40 -0.09 8.42 16 21 O -0.53 -9.82 16.31 5.30 0.09 -9.73 16 22 C -0.18 -2.28 4.89 -104.85 -0.51 -2.79 16 23 C 0.19 2.23 10.85 -17.08 -0.19 2.04 16 24 N -0.49 -5.58 10.37 -11.96 -0.12 -5.70 16 25 C 0.25 2.65 8.45 -155.64 -1.31 1.33 16 26 N -0.59 -3.68 6.20 -13.22 -0.08 -3.76 16 27 H 0.43 1.25 8.96 -40.82 -0.37 0.88 16 28 C 0.28 1.56 12.97 -89.70 -1.16 0.40 16 29 N -0.48 -4.82 11.29 -12.02 -0.14 -4.96 16 30 C -0.01 -0.07 7.23 -84.69 -0.61 -0.68 16 31 C 0.02 0.19 7.54 -38.58 -0.29 -0.10 16 32 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.04 1.08 7.60 -51.93 -0.39 0.68 16 34 H 0.05 1.44 7.25 -51.93 -0.38 1.07 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.88 4.97 -51.93 -0.26 0.62 16 42 H 0.07 0.77 7.67 -51.93 -0.40 0.38 16 43 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 44 H 0.23 0.06 8.06 -52.49 -0.42 -0.36 16 45 H 0.15 1.59 6.50 -52.49 -0.34 1.25 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -34.71 359.21 -11.43 -46.14 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.85 Total: 0.78 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -5.33 Total: 5.57 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.72 Total: -65.11 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.71 -11.43 -46.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049504332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.620 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds