Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48501 * 109.46914 * 274.98647 * 3 2 1 5 5 H 1.48505 * 109.47134 * 34.98727 * 3 2 1 6 6 H 1.48496 * 109.47284 * 154.98519 * 3 2 1 7 7 C 1.38814 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00371 * 172.38894 * 7 2 1 9 9 N 1.36937 * 119.99901 * 352.39367 * 7 2 1 10 10 C 1.48384 * 126.56076 * 3.87719 * 9 7 2 11 11 C 1.55474 * 106.97450 * 185.49581 * 10 9 7 12 12 C 1.53336 * 101.58247 * 22.38246 * 11 10 9 13 13 H 1.09004 * 111.34700 * 78.23152 * 12 11 10 14 14 C 1.45026 * 126.56331 * 183.84396 * 9 7 2 15 15 H 1.09003 * 108.70220 * 263.52704 * 14 9 7 16 16 C 1.51086 * 119.19574 * 28.80685 * 14 9 7 17 17 C 1.53866 * 107.34377 * 183.88996 * 16 14 9 18 18 C 1.52714 * 111.52363 * 303.06839 * 17 16 14 19 19 N 1.45730 * 116.43246 * 206.93161 * 12 11 10 20 20 C 1.34775 * 122.22373 * 350.63397 * 19 12 11 21 21 O 1.21573 * 120.00095 * 356.64161 * 20 19 12 22 22 C 1.47689 * 119.99741 * 176.91231 * 20 19 12 23 23 C 1.39984 * 120.38121 * 32.35446 * 22 20 19 24 24 N 1.31391 * 121.15844 * 180.02562 * 23 22 20 25 25 C 1.32546 * 121.79541 * 359.97438 * 24 23 22 26 26 N 1.37580 * 133.57156 * 180.02562 * 25 24 23 27 27 H 0.96995 * 126.23539 * 359.97438 * 26 25 24 28 28 C 1.36163 * 107.52364 * 180.02562 * 26 25 24 29 29 N 1.30060 * 110.11747 * 0.02562 * 28 26 25 30 30 C 1.35771 * 109.43199 * 359.97438 * 29 28 26 31 31 C 1.39494 * 133.74425 * 180.33349 * 30 29 28 32 32 H 0.96994 * 119.99937 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.96376 * 304.87430 * 10 9 7 34 34 H 1.08998 * 109.96133 * 66.11231 * 10 9 7 35 35 H 1.09000 * 110.98896 * 140.69989 * 11 10 9 36 36 H 1.09004 * 110.98467 * 264.46461 * 11 10 9 37 37 H 1.08996 * 109.88273 * 64.42672 * 16 14 9 38 38 H 1.09000 * 109.87803 * 303.35063 * 16 14 9 39 39 H 1.08998 * 109.06861 * 182.53984 * 17 16 14 40 40 H 1.09004 * 109.01394 * 63.55990 * 17 16 14 41 41 H 1.08999 * 109.16378 * 288.13581 * 18 17 16 42 42 H 1.09002 * 109.16520 * 168.94332 * 18 17 16 43 43 H 1.07994 * 119.42564 * 359.97438 * 23 22 20 44 44 H 1.08001 * 124.93954 * 179.97438 * 28 26 25 45 45 H 1.07997 * 120.97413 * 359.93035 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0832 -1.2063 -0.1233 9 7 1.3347 -2.3828 0.1580 10 6 -0.1359 -2.5530 0.2583 11 6 -0.3991 -4.0537 0.5682 12 6 0.9417 -4.4821 1.1765 13 1 1.0295 -4.1558 2.2128 14 6 1.9195 -3.7061 0.2582 15 1 1.8961 -4.1740 -0.7261 16 6 3.3082 -3.8565 0.8340 17 6 3.6930 -5.3420 0.7215 18 6 2.6792 -6.2386 1.4290 19 7 1.2968 -5.8887 1.0383 20 6 0.4249 -6.8083 0.5795 21 8 -0.7189 -6.4865 0.3225 22 6 0.8574 -8.2083 0.3946 23 6 1.8222 -8.7687 1.2400 24 7 2.2185 -10.0123 1.0890 25 6 1.7269 -10.7911 0.1357 26 7 1.9578 -12.0953 -0.2364 27 1 2.5797 -12.7099 0.1836 28 6 1.1550 -12.3658 -1.3024 29 7 0.4494 -11.3170 -1.6085 30 6 0.7534 -10.3039 -0.7573 31 6 0.3058 -8.9895 -0.6233 32 1 -0.4850 0.8400 0.0004 33 1 -0.5284 -1.9324 1.0638 34 1 -0.6074 -2.2798 -0.6858 35 1 -1.2120 -4.1675 1.2853 36 1 -0.6066 -4.6105 -0.3456 37 1 3.3107 -3.5512 1.8803 38 1 4.0123 -3.2472 0.2675 39 1 4.6747 -5.4906 1.1711 40 1 3.7385 -5.6183 -0.3320 41 1 2.7872 -6.1194 2.5071 42 1 2.8738 -7.2777 1.1635 43 1 2.2489 -8.1682 2.0296 44 1 1.1113 -13.3131 -1.8192 45 1 -0.4431 -8.5868 -1.2891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049504334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = 117.766227 kcal Electronic energy + Delta-G solvation = -30006.943045 eV Core-core repulsion = 26027.430179 eV Total energy + Delta-G solvation = -3979.512867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.72308 -40.63020 -38.66784 -37.52266 -35.51680 -34.01377 -32.64527 -32.38993 -31.51966 -30.35497 -28.82687 -28.21325 -25.45059 -24.75492 -24.22871 -23.39567 -22.08599 -21.51243 -20.97342 -19.80940 -19.22436 -18.99441 -18.10484 -16.67409 -16.60310 -16.11697 -15.99127 -15.46483 -15.21000 -14.71422 -14.68718 -14.36734 -14.20269 -13.81777 -13.58993 -13.35587 -13.21860 -12.88624 -12.81273 -12.44409 -12.27260 -11.82811 -11.54002 -11.51076 -11.44961 -11.02212 -10.86094 -10.65940 -10.49241 -10.48317 -10.10210 -10.00177 -9.84876 -9.69809 -9.61808 -9.26287 -9.04886 -8.86785 -8.54265 -8.26161 -6.81541 -5.69931 -3.02195 0.42115 0.58655 2.12677 2.35802 2.79876 3.01299 3.41503 3.46761 3.48871 3.55628 3.72256 4.01653 4.28118 4.43873 4.50831 4.53533 4.72344 4.79219 4.96944 5.07616 5.24824 5.36114 5.38348 5.42020 5.55721 5.62257 5.71539 5.76264 5.76392 5.87521 5.99473 6.06149 6.11984 6.25704 6.30333 6.39407 6.56163 6.64573 6.72533 6.78387 6.90754 7.16706 7.26434 7.41998 7.58092 7.62905 7.69333 7.85590 8.26016 8.32007 9.20649 9.84910 10.53336 11.42813 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.002670 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.959026 B =10483.405974 C =10995.835172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.171 3.829 11 C -0.129 4.129 12 C 0.117 3.883 13 H 0.082 0.918 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.129 4.129 18 C 0.082 3.918 19 N -0.591 5.591 20 C 0.568 3.432 21 O -0.521 6.521 22 C -0.188 4.188 23 C 0.156 3.844 24 N -0.485 5.485 25 C 0.251 3.749 26 N -0.589 5.589 27 H 0.430 0.570 28 C 0.274 3.726 29 N -0.480 5.480 30 C -0.006 4.006 31 C 0.042 3.958 32 H 0.253 0.747 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.189 0.811 44 H 0.227 0.773 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -25.380 2.530 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.047 3.953 11 C -0.167 4.167 12 C 0.013 3.987 13 H 0.100 0.900 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.041 4.041 19 N -0.323 5.323 20 C 0.355 3.645 21 O -0.398 6.398 22 C -0.196 4.196 23 C -0.012 4.012 24 N -0.198 5.198 25 C 0.015 3.985 26 N -0.204 5.204 27 H 0.270 0.730 28 C -0.014 4.014 29 N -0.199 5.199 30 C -0.125 4.125 31 C 0.015 3.985 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.205 0.795 44 H 0.243 0.757 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.060 -25.257 2.206 26.068 hybrid contribution 0.880 0.740 0.237 1.174 sum 6.940 -24.517 2.443 25.597 Atomic orbital electron populations 1.69963 1.04919 1.25091 1.56431 1.24813 0.95625 0.97602 1.02206 0.86176 0.78716 0.83876 0.77458 1.21739 1.21659 1.20663 1.18968 0.91111 0.82397 1.43036 0.90360 1.44072 1.01928 1.00446 1.85230 1.21754 0.83739 0.89174 1.00647 1.22930 0.94273 0.98314 1.01223 1.22354 0.98896 0.77553 0.99862 0.89964 1.20661 0.91457 0.87756 0.95196 0.96618 1.21426 0.98289 0.93981 1.01673 1.21904 0.97865 0.95948 1.01098 1.22531 0.81418 1.00331 0.99790 1.47881 1.11827 1.08680 1.63890 1.17743 0.85159 0.83752 0.77849 1.90823 1.18254 1.80047 1.50665 1.20786 1.01935 0.96505 1.00366 1.23413 0.91368 0.88792 0.97639 1.66488 1.28360 1.05188 1.19773 1.19160 0.96850 0.87109 0.95399 1.42863 1.37934 1.10294 1.29307 0.73040 1.25537 0.88675 0.99936 0.87279 1.70510 1.24847 0.98853 1.25645 1.19543 1.00304 0.95547 0.97141 1.20822 0.94604 0.88783 0.94315 0.93710 0.92613 0.94174 0.91802 0.90231 0.91627 0.91421 0.90744 0.91802 0.90718 0.88537 0.79503 0.75701 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.10 10.51 55.49 0.58 -26.52 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.99 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.22 9.92 -15.06 -0.15 -6.36 16 8 H 0.08 2.06 7.36 -52.49 -0.39 1.67 16 9 N -0.59 -15.01 3.35 -163.60 -0.55 -15.56 16 10 C 0.17 4.29 5.48 -1.69 -0.01 4.28 16 11 C -0.13 -2.70 4.97 -25.24 -0.13 -2.83 16 12 C 0.12 2.17 3.28 -67.13 -0.22 1.95 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.16 3.24 2.57 -68.64 -0.18 3.07 16 15 H 0.02 0.36 8.04 -51.93 -0.42 -0.05 16 16 C -0.12 -1.91 5.47 -27.24 -0.15 -2.05 16 17 C -0.13 -1.57 5.92 -26.43 -0.16 -1.73 16 18 C 0.08 0.91 4.96 -3.45 -0.02 0.89 16 19 N -0.59 -8.90 2.92 -165.53 -0.48 -9.38 16 20 C 0.57 8.96 7.42 -12.40 -0.09 8.87 16 21 O -0.52 -9.95 13.72 5.30 0.07 -9.88 16 22 C -0.19 -2.44 5.59 -104.85 -0.59 -3.02 16 23 C 0.16 1.68 8.70 -17.09 -0.15 1.53 16 24 N -0.49 -5.39 10.36 -11.96 -0.12 -5.51 16 25 C 0.25 2.71 8.45 -155.63 -1.31 1.39 16 26 N -0.59 -3.84 6.20 -13.22 -0.08 -3.92 16 27 H 0.43 1.29 8.96 -40.82 -0.37 0.93 16 28 C 0.27 1.70 12.97 -89.71 -1.16 0.54 16 29 N -0.48 -5.27 11.29 -12.02 -0.14 -5.40 16 30 C -0.01 -0.07 7.23 -84.69 -0.61 -0.68 16 31 C 0.04 0.56 9.78 -38.58 -0.38 0.18 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.06 1.52 7.19 -51.93 -0.37 1.14 16 34 H 0.04 1.11 7.83 -51.93 -0.41 0.70 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.74 6.31 -51.93 -0.33 1.42 16 37 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 38 H 0.07 1.18 7.72 -51.93 -0.40 0.78 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.90 3.65 -51.93 -0.19 0.71 16 43 H 0.19 1.58 5.24 -52.49 -0.28 1.31 16 44 H 0.23 0.16 8.06 -52.49 -0.42 -0.26 16 45 H 0.15 2.03 8.01 -52.49 -0.42 1.61 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -35.78 352.91 -11.47 -47.25 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.66 Total: 0.88 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -5.39 Total: 5.76 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.79 Total: -66.29 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.78 -11.47 -47.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049504334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.017 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds