Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99760 * 2 1 4 4 H 1.48498 * 109.46766 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47187 * 299.99873 * 3 2 1 6 6 H 1.48493 * 109.47079 * 60.00190 * 3 2 1 7 7 C 1.38809 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99908 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00383 * 359.97438 * 7 2 1 10 10 C 1.49376 * 126.96670 * 359.65373 * 9 7 2 11 11 C 1.54571 * 107.53640 * 182.92339 * 10 9 7 12 12 C 1.54418 * 102.44342 * 21.64300 * 11 10 9 13 13 H 1.09002 * 110.72124 * 80.56066 * 12 11 10 14 14 C 1.48207 * 125.76502 * 180.02562 * 9 7 2 15 15 H 1.09000 * 111.53586 * 32.94080 * 14 9 7 16 16 C 1.53015 * 107.11671 * 270.81835 * 14 9 7 17 17 C 1.52734 * 110.76709 * 191.95744 * 16 14 9 18 18 C 1.51351 * 109.55379 * 62.88551 * 17 16 14 19 19 N 1.45118 * 111.60793 * 203.41490 * 12 11 10 20 20 C 1.34771 * 119.58323 * 248.66633 * 19 12 11 21 21 O 1.21576 * 119.99832 * 354.14434 * 20 19 12 22 22 C 1.47690 * 120.00373 * 174.14749 * 20 19 12 23 23 C 1.39980 * 120.38682 * 138.57476 * 22 20 19 24 24 N 1.31386 * 121.16188 * 179.97438 * 23 22 20 25 25 C 1.32547 * 121.79049 * 359.97438 * 24 23 22 26 26 N 1.37582 * 133.56625 * 180.02562 * 25 24 23 27 27 H 0.96996 * 126.23804 * 359.97296 * 26 25 24 28 28 C 1.36168 * 107.52387 * 179.97438 * 26 25 24 29 29 N 1.30060 * 110.11376 * 359.97438 * 28 26 25 30 30 C 1.35773 * 109.43162 * 0.02562 * 29 28 26 31 31 C 1.39494 * 133.74075 * 180.32339 * 30 29 28 32 32 H 0.96995 * 120.00256 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.77711 * 63.40443 * 10 9 7 34 34 H 1.09006 * 109.85600 * 302.48372 * 10 9 7 35 35 H 1.08994 * 110.81141 * 263.40497 * 11 10 9 36 36 H 1.09002 * 110.81282 * 139.87976 * 11 10 9 37 37 H 1.09006 * 109.21105 * 312.27525 * 16 14 9 38 38 H 1.08999 * 109.20643 * 71.63546 * 16 14 9 39 39 H 1.08997 * 109.63967 * 183.43237 * 17 16 14 40 40 H 1.09003 * 109.63879 * 304.05862 * 17 16 14 41 41 H 1.09002 * 110.12301 * 182.79692 * 18 17 16 42 42 H 1.09002 * 109.42184 * 61.99142 * 18 17 16 43 43 H 1.08001 * 119.41575 * 359.97438 * 23 22 20 44 44 H 1.08003 * 124.94549 * 179.97438 * 28 26 25 45 45 H 1.07993 * 120.97582 * 359.92169 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1571 -2.5693 0.0072 11 6 -0.4404 -4.0872 0.0790 12 6 0.8761 -4.6441 0.6630 13 1 0.9026 -4.5162 1.7452 14 6 1.9340 -3.7395 -0.0005 15 1 2.8741 -3.7551 0.5508 16 6 2.1379 -4.1416 -1.4628 17 6 2.4831 -5.6253 -1.5733 18 6 1.3261 -6.4543 -1.0587 19 7 1.0611 -6.0431 0.3247 20 6 0.9886 -6.9771 1.2936 21 8 0.8759 -6.6396 2.4561 22 6 1.0461 -8.4107 0.9432 23 6 1.7925 -9.3011 1.7240 24 7 1.8538 -10.5794 1.4266 25 6 1.2158 -11.0842 0.3802 26 7 1.1111 -12.3512 -0.1458 27 1 1.5310 -13.1532 0.2026 28 6 0.3107 -12.2741 -1.2447 29 7 -0.0819 -11.0476 -1.4269 30 6 0.4422 -10.2566 -0.4558 31 6 0.3501 -8.8951 -0.1667 32 1 -0.4850 0.8400 0.0004 33 1 -0.5841 -2.1553 -0.9062 34 1 -0.5866 -2.0705 0.8761 35 1 -0.6259 -4.4940 -0.9150 36 1 -1.2777 -4.2938 0.7457 37 1 1.2223 -3.9439 -2.0202 38 1 2.9504 -3.5517 -1.8869 39 1 2.6839 -5.8781 -2.6144 40 1 3.3603 -5.8438 -0.9643 41 1 1.5817 -7.5135 -1.0872 42 1 0.4458 -6.2698 -1.6745 43 1 2.3274 -8.9307 2.5860 44 1 0.0411 -13.1098 -1.8735 45 1 -0.2388 -8.2341 -0.7852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049504335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = 96.543336 kcal Electronic energy + Delta-G solvation = -29939.162956 eV Core-core repulsion = 25958.729796 eV Total energy + Delta-G solvation = -3980.433160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.74879 -40.60184 -38.71513 -37.57440 -35.38409 -34.06904 -32.50198 -32.39418 -31.47218 -30.17567 -28.99529 -28.19930 -25.46281 -24.55156 -24.18375 -23.60217 -22.28611 -21.86250 -20.56822 -20.02229 -19.14283 -18.36359 -17.76410 -17.16648 -16.84885 -16.27695 -15.95881 -15.83436 -15.00604 -14.75592 -14.53557 -14.33412 -14.18044 -13.89133 -13.54118 -13.51607 -13.22962 -13.00948 -12.77002 -12.44522 -12.10609 -11.91208 -11.59083 -11.44856 -11.34628 -11.01202 -10.95543 -10.79349 -10.64138 -10.51595 -10.18599 -10.05231 -9.90893 -9.62448 -9.57952 -9.48806 -9.13506 -8.95618 -8.65138 -8.32047 -6.85179 -5.71064 -3.03821 0.37205 0.60187 2.11575 2.34824 2.70745 3.02964 3.41337 3.45208 3.46952 3.49219 3.69469 4.00808 4.31165 4.42987 4.49138 4.53098 4.72623 4.94135 4.96918 5.16182 5.29056 5.33899 5.38759 5.50958 5.54958 5.60493 5.64688 5.70000 5.70325 5.85000 5.99302 6.10192 6.11449 6.19441 6.31336 6.34597 6.49465 6.58603 6.63362 6.73198 6.94662 7.06301 7.23238 7.43018 7.52175 7.53814 7.58382 7.80151 8.18155 8.23803 9.17558 9.79641 10.47833 11.42097 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028170 B = 0.002580 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.718387 B =10850.390546 C =11043.826240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.222 4.222 8 H 0.079 0.921 9 N -0.598 5.598 10 C 0.177 3.823 11 C -0.151 4.151 12 C 0.130 3.870 13 H 0.105 0.895 14 C 0.155 3.845 15 H 0.059 0.941 16 C -0.128 4.128 17 C -0.134 4.134 18 C 0.099 3.901 19 N -0.583 5.583 20 C 0.563 3.437 21 O -0.531 6.531 22 C -0.184 4.184 23 C 0.193 3.807 24 N -0.486 5.486 25 C 0.253 3.747 26 N -0.590 5.590 27 H 0.430 0.570 28 C 0.275 3.725 29 N -0.480 5.480 30 C -0.007 4.007 31 C 0.018 3.982 32 H 0.252 0.748 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.177 0.823 44 H 0.227 0.773 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -26.184 -3.911 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.323 5.323 10 C 0.053 3.947 11 C -0.190 4.190 12 C 0.026 3.974 13 H 0.123 0.877 14 C 0.046 3.954 15 H 0.077 0.923 16 C -0.168 4.168 17 C -0.173 4.173 18 C -0.023 4.023 19 N -0.314 5.314 20 C 0.350 3.650 21 O -0.408 6.408 22 C -0.192 4.192 23 C 0.025 3.975 24 N -0.198 5.198 25 C 0.017 3.983 26 N -0.205 5.205 27 H 0.270 0.730 28 C -0.013 4.013 29 N -0.199 5.199 30 C -0.127 4.127 31 C -0.009 4.009 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.194 0.806 44 H 0.243 0.757 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.504 -25.954 -3.491 26.231 hybrid contribution 0.596 0.618 0.050 0.860 sum 2.100 -25.336 -3.441 25.654 Atomic orbital electron populations 1.69933 1.04867 1.24973 1.57088 1.24783 0.95697 0.97561 1.02399 0.86059 0.78713 0.83887 0.77194 1.20544 1.21846 1.21791 1.19054 0.90322 0.82051 1.43569 0.90307 1.45200 1.01182 0.99101 1.86845 1.21534 0.84231 0.87698 1.01275 1.23095 0.96303 0.99665 0.99922 1.21844 0.96591 0.77580 1.01368 0.87701 1.21324 0.94602 0.86371 0.93124 0.92326 1.22109 1.02009 0.92843 0.99888 1.21562 0.97776 0.97191 1.00749 1.21737 0.99141 0.99174 0.82250 1.47535 1.69169 1.06977 1.07708 1.17925 0.77182 0.84463 0.85424 1.90813 1.49778 1.81692 1.18524 1.20748 1.04169 0.95876 0.98451 1.22703 0.93038 0.85217 0.96556 1.66505 1.22150 1.15117 1.16055 1.19176 0.98109 0.86654 0.94409 1.42874 1.43806 1.08294 1.25493 0.73022 1.25533 0.90679 0.97220 0.87881 1.70514 1.24599 1.00790 1.24029 1.19514 1.02065 0.94823 0.96269 1.21045 0.94444 0.91990 0.93436 0.93794 0.93842 0.92932 0.92089 0.91839 0.91783 0.92039 0.91179 0.91941 0.89810 0.91055 0.80572 0.75715 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.52 55.49 0.58 -26.27 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.22 -6.05 10.31 -15.06 -0.16 -6.20 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.60 -14.76 2.99 -160.36 -0.48 -15.24 16 10 C 0.18 4.19 5.29 -1.62 -0.01 4.18 16 11 C -0.15 -2.81 6.08 -25.16 -0.15 -2.96 16 12 C 0.13 2.38 3.12 -67.30 -0.21 2.17 16 13 H 0.11 2.17 6.93 -51.93 -0.36 1.81 16 14 C 0.15 3.09 3.54 -66.36 -0.23 2.85 16 15 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 16 C -0.13 -2.20 5.13 -26.86 -0.14 -2.33 16 17 C -0.13 -1.74 5.95 -27.70 -0.16 -1.90 16 18 C 0.10 1.21 4.56 -4.75 -0.02 1.19 16 19 N -0.58 -8.74 2.73 -167.51 -0.46 -9.19 16 20 C 0.56 8.59 7.27 -12.40 -0.09 8.50 16 21 O -0.53 -9.89 16.28 5.30 0.09 -9.80 16 22 C -0.18 -2.29 5.02 -104.85 -0.53 -2.82 16 23 C 0.19 2.26 10.79 -17.09 -0.18 2.07 16 24 N -0.49 -5.59 10.37 -11.96 -0.12 -5.72 16 25 C 0.25 2.65 8.45 -155.63 -1.31 1.34 16 26 N -0.59 -3.67 6.20 -13.22 -0.08 -3.75 16 27 H 0.43 1.24 8.96 -40.82 -0.37 0.88 16 28 C 0.28 1.56 12.97 -89.70 -1.16 0.39 16 29 N -0.48 -4.80 11.29 -12.02 -0.14 -4.94 16 30 C -0.01 -0.08 7.23 -84.69 -0.61 -0.69 16 31 C 0.02 0.21 7.54 -38.58 -0.29 -0.08 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.04 1.12 7.68 -51.93 -0.40 0.72 16 34 H 0.05 1.40 7.39 -51.93 -0.38 1.01 16 35 H 0.06 1.04 6.83 -51.93 -0.35 0.68 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.17 7.15 -51.93 -0.37 0.80 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.89 4.83 -51.93 -0.25 0.64 16 42 H 0.07 0.82 7.47 -51.93 -0.39 0.43 16 43 H 0.18 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.23 0.06 8.06 -52.48 -0.42 -0.36 16 45 H 0.15 1.58 6.75 -52.49 -0.35 1.22 16 LS Contribution 356.96 15.07 5.38 5.38 Total: -1.00 -34.73 356.96 -11.35 -46.08 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.73 Total: 1.05 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -5.36 Total: 5.38 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -0.69 Total: -65.11 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.73 -11.35 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049504335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.621 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds