Wall clock time and date at job start Sat Apr 11 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99600 * 2 1 4 4 H 1.48492 * 109.47221 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47136 * 119.99959 * 3 2 1 6 6 H 1.48494 * 109.46812 * 239.99637 * 3 2 1 7 7 C 1.38804 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00236 * 0.02562 * 7 2 1 10 10 C 1.46825 * 125.37855 * 179.97438 * 9 7 2 11 11 C 1.53899 * 107.50085 * 181.00556 * 10 9 7 12 12 H 1.08999 * 109.09951 * 260.22942 * 11 10 9 13 13 C 1.50774 * 110.59121 * 140.15235 * 11 10 9 14 14 C 1.51328 * 113.46854 * 289.13177 * 13 11 10 15 15 C 1.51607 * 112.05552 * 304.71518 * 14 13 11 16 16 N 1.44503 * 112.73761 * 42.34105 * 15 14 13 17 17 C 1.34774 * 116.65087 * 154.48344 * 16 15 14 18 18 O 1.21540 * 120.00029 * 178.46354 * 17 16 15 19 19 C 1.47971 * 120.00138 * 358.46504 * 17 16 15 20 20 C 1.39732 * 119.43011 * 188.93907 * 19 17 16 21 21 C 1.36987 * 119.59752 * 179.72622 * 20 19 17 22 22 C 1.39891 * 118.36133 * 0.53323 * 21 20 19 23 23 N 1.35437 * 133.81347 * 179.73409 * 22 21 20 24 24 C 1.30210 * 109.57942 * 180.02562 * 23 22 21 25 25 N 1.35996 * 110.18200 * 359.97438 * 24 23 22 26 26 H 0.96998 * 126.29664 * 180.02562 * 25 24 23 27 27 C 1.37945 * 107.41169 * 0.02562 * 25 24 23 28 28 N 1.31882 * 133.83009 * 179.97438 * 27 25 24 29 29 C 1.44114 * 126.69578 * 334.45831 * 16 15 14 30 30 H 1.09000 * 109.49639 * 254.12835 * 29 16 15 31 31 C 1.46903 * 125.37555 * 359.69269 * 9 7 2 32 32 H 0.96999 * 120.00492 * 0.02562 * 1 2 3 33 33 H 1.08996 * 109.84687 * 300.49055 * 10 9 7 34 34 H 1.08998 * 109.84580 * 61.52148 * 10 9 7 35 35 H 1.09002 * 108.68080 * 50.15932 * 13 11 10 36 36 H 1.09003 * 108.68317 * 168.09744 * 13 11 10 37 37 H 1.09001 * 108.96236 * 65.37643 * 14 13 11 38 38 H 1.09000 * 108.96265 * 184.13362 * 14 13 11 39 39 H 1.09007 * 108.82967 * 163.18135 * 15 14 13 40 40 H 1.08996 * 108.82908 * 281.49806 * 15 14 13 41 41 H 1.08001 * 120.19838 * 359.97438 * 20 19 17 42 42 H 1.08007 * 120.81963 * 180.26576 * 21 20 19 43 43 H 1.07997 * 124.91238 * 180.02562 * 24 23 22 44 44 H 1.09006 * 110.08512 * 281.32223 * 31 9 7 45 45 H 1.09003 * 110.09016 * 42.89336 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6966 1.2125 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 1.9375 -3.7227 0.0005 11 6 0.7963 -4.7549 -0.0252 12 1 0.6329 -5.1312 0.9846 13 6 1.1443 -5.9077 -0.9326 14 6 1.1357 -5.5426 -2.4011 15 6 -0.1880 -4.9408 -2.8304 16 7 -0.7111 -3.9981 -1.8683 17 6 -1.5415 -3.0483 -2.3424 18 8 -2.0388 -2.2411 -1.5819 19 6 -1.8477 -2.9883 -3.7888 20 6 -2.5542 -1.8947 -4.2962 21 6 -2.8347 -1.8328 -5.6356 22 6 -2.4080 -2.8847 -6.4532 23 7 -2.5143 -3.1451 -7.7780 24 6 -1.9382 -4.2814 -8.0470 25 7 -1.4229 -4.8263 -6.9125 26 1 -0.9453 -5.6679 -6.8454 27 6 -1.7042 -3.9621 -5.8748 28 7 -1.4521 -3.9765 -4.5804 29 6 -0.4366 -3.9693 -0.4538 30 1 -1.3070 -4.3319 0.0931 31 6 -0.1369 -2.5258 0.0064 32 1 -0.4851 0.8400 -0.0004 33 1 2.5646 -3.8424 -0.8829 34 1 2.5361 -3.8554 0.9017 35 1 2.1373 -6.2719 -0.6692 36 1 0.4259 -6.7108 -0.7681 37 1 1.9309 -4.8218 -2.5916 38 1 1.3231 -6.4402 -2.9904 39 1 -0.0498 -4.4305 -3.7837 40 1 -0.9122 -5.7440 -2.9656 41 1 -2.8736 -1.1011 -3.6370 42 1 -3.3757 -0.9947 -6.0496 43 1 -1.8774 -4.7264 -9.0292 44 1 -0.5241 -2.3632 1.0123 45 1 -0.5829 -1.8125 -0.6867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050072615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:07 Heat of formation + Delta-G solvation = 129.939536 kcal Electronic energy + Delta-G solvation = -30976.395252 eV Core-core repulsion = 26997.410259 eV Total energy + Delta-G solvation = -3978.984992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50492 -40.57994 -38.53484 -37.18680 -35.34058 -33.92470 -33.05749 -31.97283 -31.33055 -30.16341 -29.37073 -27.15564 -25.56151 -24.89314 -23.77900 -23.39840 -21.97035 -21.73198 -21.00179 -19.73231 -18.75182 -17.81727 -17.56757 -17.15158 -16.52756 -16.02232 -15.70654 -15.28140 -15.03070 -14.87359 -14.42057 -14.27961 -13.94211 -13.76310 -13.68829 -13.21679 -13.00859 -12.77479 -12.59579 -12.15584 -12.04219 -11.59282 -11.58111 -11.36494 -11.26114 -10.95719 -10.80905 -10.69630 -10.47604 -10.25360 -10.23209 -10.01632 -9.86001 -9.52596 -9.23414 -8.96862 -8.77650 -8.61456 -8.32577 -7.73383 -6.63257 -5.46268 -2.89122 0.41816 1.18634 2.30776 2.43673 3.19350 3.46004 3.48400 3.52240 3.54266 3.88766 3.99020 4.19616 4.48773 4.60951 4.83538 4.90696 5.02335 5.09341 5.11289 5.24243 5.38194 5.55201 5.58634 5.64052 5.67563 5.80494 5.90065 5.96912 6.00965 6.03402 6.11207 6.15505 6.22973 6.37081 6.41368 6.53755 6.59579 6.71332 6.79392 6.83367 6.89172 7.23570 7.45747 7.56081 7.68597 7.79574 7.88697 8.22435 8.60881 8.82400 9.38337 10.00021 10.63832 11.55397 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.004360 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.310761 B = 6421.018730 C = 7831.747000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.233 4.233 8 H 0.073 0.927 9 N -0.602 5.602 10 C 0.141 3.859 11 C -0.099 4.099 12 H 0.076 0.924 13 C -0.101 4.101 14 C -0.130 4.130 15 C 0.106 3.894 16 N -0.561 5.561 17 C 0.549 3.451 18 O -0.487 6.487 19 C 0.133 3.867 20 C -0.120 4.120 21 C -0.027 4.027 22 C 0.015 3.985 23 N -0.491 5.491 24 C 0.276 3.724 25 N -0.588 5.588 26 H 0.429 0.571 27 C 0.225 3.775 28 N -0.444 5.444 29 C 0.126 3.874 30 H 0.060 0.940 31 C 0.132 3.868 32 H 0.252 0.748 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.050 0.950 41 H 0.161 0.839 42 H 0.147 0.853 43 H 0.224 0.776 44 H 0.021 0.979 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.967 -14.477 -14.499 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.361 4.361 8 H 0.091 0.909 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.140 4.140 14 C -0.168 4.168 15 C -0.017 4.017 16 N -0.293 5.293 17 C 0.334 3.666 18 O -0.360 6.360 19 C -0.014 4.014 20 C -0.143 4.143 21 C -0.055 4.055 22 C -0.106 4.106 23 N -0.211 5.211 24 C -0.012 4.012 25 N -0.204 5.204 26 H 0.269 0.731 27 C -0.012 4.012 28 N -0.162 5.162 29 C 0.022 3.978 30 H 0.078 0.922 31 C 0.008 3.992 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.068 0.932 41 H 0.179 0.821 42 H 0.165 0.835 43 H 0.240 0.760 44 H 0.039 0.961 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.242 -13.982 -14.272 20.425 hybrid contribution 0.968 0.284 0.223 1.033 sum -3.275 -13.698 -14.049 19.892 Atomic orbital electron populations 1.69903 1.04391 1.24779 1.56083 1.24810 0.95695 0.97392 1.02359 0.86285 0.78475 0.83771 0.77705 1.21553 1.21344 1.21408 1.18921 0.90223 0.82524 1.44448 0.90897 1.44342 1.01924 0.99629 1.86922 1.21276 0.93574 0.86069 0.97580 1.21256 0.96001 0.95456 0.99093 0.90529 1.20531 1.01383 0.97297 0.94743 1.21216 0.98495 1.00666 0.96464 1.21727 0.94074 0.92588 0.93323 1.46465 1.45152 1.29491 1.08192 1.17824 0.81483 0.81902 0.85429 1.90854 1.50509 1.38704 1.55918 1.21355 0.95535 0.90610 0.93915 1.21649 0.98021 0.99240 0.95361 1.20468 0.97067 0.96381 0.91570 1.19842 1.02651 0.96796 0.91303 1.70405 1.22547 1.14641 1.13496 1.25473 0.93234 0.90727 0.91737 1.42808 1.49709 1.21533 1.06315 0.73135 1.19261 1.00637 0.91992 0.89287 1.67260 1.19475 1.28021 1.01427 1.21351 0.96052 1.01218 0.79182 0.92194 1.22571 0.84226 0.91474 1.00974 0.93670 0.96128 0.96392 0.91893 0.92661 0.91576 0.91443 0.86489 0.93185 0.82149 0.83487 0.75998 0.96104 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 10.17 55.49 0.56 -27.08 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.23 -6.78 10.25 -15.06 -0.15 -6.93 16 8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -16.18 3.39 -171.20 -0.58 -16.76 16 10 C 0.14 3.07 6.74 -3.40 -0.02 3.05 16 11 C -0.10 -1.78 2.96 -91.60 -0.27 -2.05 16 12 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.10 -1.43 5.10 -28.69 -0.15 -1.58 16 14 C -0.13 -1.80 5.84 -28.28 -0.17 -1.97 16 15 C 0.11 1.62 4.90 -5.81 -0.03 1.59 16 16 N -0.56 -10.70 3.09 -170.80 -0.53 -11.22 16 17 C 0.55 11.15 7.01 -12.27 -0.09 11.06 16 18 O -0.49 -11.52 13.20 5.33 0.07 -11.45 16 19 C 0.13 2.27 6.52 -82.97 -0.54 1.73 16 20 C -0.12 -1.84 9.55 -39.48 -0.38 -2.21 16 21 C -0.03 -0.37 10.16 -39.42 -0.40 -0.77 16 22 C 0.01 0.20 7.25 -84.58 -0.61 -0.41 16 23 N -0.49 -5.81 11.27 -11.93 -0.13 -5.95 16 24 C 0.28 2.06 12.96 -89.74 -1.16 0.89 16 25 N -0.59 -4.80 6.22 -13.21 -0.08 -4.88 16 26 H 0.43 2.04 8.96 -40.82 -0.37 1.67 16 27 C 0.22 2.90 8.46 -155.74 -1.32 1.58 16 28 N -0.44 -6.55 5.72 -8.82 -0.05 -6.61 16 29 C 0.13 2.60 3.24 -68.77 -0.22 2.38 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 C 0.13 3.45 4.67 -3.06 -0.01 3.43 16 32 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.02 0.45 6.70 -51.93 -0.35 0.10 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.81 8.10 -51.93 -0.42 0.38 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.04 7.10 -51.93 -0.37 0.67 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.12 1.84 4.72 -76.44 -0.36 1.48 16 40 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 41 H 0.16 2.46 7.64 -52.49 -0.40 2.06 16 42 H 0.15 1.58 8.06 -52.48 -0.42 1.16 16 43 H 0.22 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.15 4.16 2.89 -52.44 -0.15 4.01 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -36.77 350.32 -11.87 -48.64 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.76 Total: 2.63 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: -5.62 Total: 9.53 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -0.81 Total: -72.49 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.77 -11.87 -48.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050072615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.575 kcal (2) G-P(sol) polarization free energy of solvation -36.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds